| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4531900 | 95 (1.010) | 6 (0.070) | 5/160 | NT | 6.8% | intergenic (‑249/+150) | sgcX/yjhY | putative endoglucanase with Zn‑dependent exopeptidase domain/pseudogene, zinc finger protein family |
| ? | NC_000913 | = 4531914 | 80 (0.950) | intergenic (‑263/+136) | sgcX/yjhY | putative endoglucanase with Zn‑dependent exopeptidase domain/pseudogene, zinc finger protein family | |||||
| Rejected: Frequency below cutoff threshold. | |||||||||||
GCTCAACGTTTGTGAAAGTTACGGGCTGGAGAGACCAGTGATTATGGTTGAAATAATGAGGATGAATAAAACGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4531793‑4531900‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcaggacgTAATGAAGAGGGAGCGTCCTGCAACAAAGTGGTGCTATAACAGTTACCGCGTTTTATTCATCCTCATTATTTCAACCATAATCACTGGTCTCTCCAGCC < NC_000913/4531914‑4531816 GCTCAACGTTTGTGAAAGTTACGGGCTGGAGAGACCAGTGATTATGGTTGAAATAATGAGGATGAATAAAACGCGGTAACTGTTATAGCACCACTTTGTT < 2:2315485/100‑1GCTCAACGTTTGTGAAAGTTACGGGCTGGAGAGACCACTGATTATGGTTGAAATAATGAGGATGAATAAAACGCGGTAACTGTTATAGCACCACTTTGTT > 2:1399175/1‑100GCTCAACGGTTGTGAAAGTTACGGGCTGGAGAGACCAGTGATTATGGTTGAAATAATGAGGATGAATAAAACGCGGTAACTGTTATAGCACCACTTTGTT < 2:2118172/100‑1 CTCAACGTTTGTGAAAGTTACGGGCTGGAGAGACCAGTGATTATGGTTGAAATAATGAGGATGAATAAAACGCGGTAACTGTTATAGCACCACTTTGTTG < 2:935790/100‑1 CTCAACGTTTGTGAAAGTTACGGGCTGGAGAGACCAGTGATTAGGGTTGAAATAATGAGGATGAATAAAACGCGGTAACTGTTATAGCACCACTTTGTTG < 2:1663151/100‑1 TCAACGTTTGTGAAAGTTACGGGCTGGAGAGACCAGTGATTATGGTTGAAATAATGAGGATGAATAAAACGCGGTAACTGTTATAGCACCACTTTGTTGC < 2:2011012/100‑1 TCAACGTTTGTGAAAGTTACGGGCTGGAGAGACCAGTGATTATGGTTGAAATAATGAGGATGAATAAAACGCGGTAACTGTTATAGCACCACTTTGTTG < 2:1774004/99‑1 CAACGTTTGTGAAAGTTACGGGCTGGAGAGACCAGTGATTATGGTTGAAATAATGAGGATGAATAAAACGCGGTAACTGTTATAGCACCACTTTGTTGCA > 2:40338/1‑100 CAACGTTTGTGAAAGTTACGGGCTGGAGAGACCAGTGATTATGGTTGAAATAATGAGGATGAATAAAACGCGGTAACTGTTATAGCACCACTTTGTTGCA > 2:1319415/1‑100 CAACGTTTGTGAAAGTTACGGGCTGGAGAGACCAGTGATTATGGTTGAAATAATGAGGATGAATAAAACGCGGTAACTGTTATAGCACCACTTTGTTGCA > 1:1604069/1‑100 ctCGTTTGTGAAAGTTACGGGCTGGAGAGACCAGTGATTATGGTTGAAATAATGAGGATGAATAAAACGCGGTAACTGTTATAGCACCACTTTGTTGCAG < 2:236661/98‑1 AACGTTTGTGAAAGTTACGGGCTGGAGAGACCAGTGATTATGGTTGAAATAATGAGGATGAATAAAACGCGGTAACTGTTATAGCACCACTTTGTTGCAG < 1:917014/100‑1 AACGTTTGTGAAAGTTACGGGCTGGAGAGACCAGTGATTATGGTTGAAATAATGAGGATGAATAAAACGCGGTAACTGTTATAGCACCACTTTGTTGCAG < 1:1877226/100‑1 ACGTTTGTGAAAGTTACGGGCTGGAGAGACCAGTGATTATGGTTGAAATAATGAGGATGAATAAAACGCGGTAACTGTTATAGCACCACTTTGTTGCAGG < 1:2415993/100‑1 CGTTTGTGAAAGTTACGGGCTGGAGAGACCAGTGATTATGGTTGAAATAATGAGGATGAATAAAACGCGGTAACTGTTATAGCACCACTTTGTTGCAGag > 1:236664/1‑98 GTTTGTGAAAGTTACGGGCTGGAGAGACCAGTGATTATGGTTGAAATAATGAGGATGAATAAAACGCGGTAACTGTTATAGCACCACTTTGTTGCAGGAC > 1:78459/1‑100 AGACCAGTGATTATGGTTGAAATAATGAGGATGAATAAAACGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACGTAATGAAGAGGGAGCGTCCTGCA < 1:992352/100‑1 ACCAGTGATTATGGTTGAAATAATGAGGATGAATAAAACGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACGTAATGAAGGGGGAGCGTCCTGCAAC < 1:2199443/100‑1 ACCAGTGATTATGGTTGAAATAATGAGGATGAATAAAACGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACGTAATGAAGAGGGAGCGTCCTGCAAC < 1:1235798/100‑1 GATTATGGTTGAAATAATGAGGATGAATAAAACGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACGTAATGAAGAGGGAGCGTCCTGCAACAAAGTG < 1:611091/100‑1 ATGGTTGAAATAATGAGGATGAATAAAACGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACGTAATGAAGAGGGAGCGTCCTGCAACAAAGTGGTGC < 1:1868850/100‑1 GCGGTAACTGTTATAGCACCACTTTGTTGCAGGACGTAATGAAGAGGGAGCGTCCTGCAACAAAGTGGTGCTATAACAGTTACCGCGTTTTATTCATCC < 2:1921310/99‑1 AGGACGTAATGAAGAGGGAGCGTCCTGCAACAAAGTGGTGCTATAACAGTTACCGCGTTTTATTCATCCTCATTATTTCAACCATAATCACTGGTCTCTC > 1:1070376/1‑100 GGACGTAATGAAGAGGGAGCGTCCTGCAACAAAGTGGTGCTATAACAGTTACCGCGTTTTATTCATCCTCATTATTTCAACCATAATCACTGGTCTCTCC > 1:1136663/1‑100 GGACGTAATGAAGAGGGAGCGTCCTGCAACAAAGTGGTGCTATAACAGTTACCGCGTTTTATTCATCCTCATTATTTCAACCATAATCACTGGTCTCTCC > 2:16406/1‑100 GACGTAATGAAGAGGGAGCGTCCTGCAACAAAGTGGTGCTATAACAGTTACCGCGTTTTATTCATCCTCATTATTTCAACCATAATCACTGGTCTCTCCA > 1:934386/1‑100 GACGTAATGAAGAGGGAGCGTCCTGCAACAAAGTGGTGCTATAACAGTTACCGCGTTTTATTCATCCTCATTATTTCAACCATAATCACTGGTCTCTCCA > 1:2429423/1‑100 ACGTAATGAAGAGGGAGCGTCCTGCAACAAAGTGGTGCTATAACAGTTACCGCGTTTTATTCATCCTCATTATTTCAACCATAATCACTGGTCTCTCCAG > 1:69739/1‑100 CGTAATGAAGAGGGAGCGTCCTGCAACAAAGTGGTGCTATAACAGTTACCGCGTTTTATTCATCCTCATTATTTCAACCATAATCACTGGTCTCTCCAGC < 1:1573477/100‑1 GTAATGAAGAGGGAGCGTCCTGCAACAAAGTGGTGCTATAACAGTTACCGCGTTTTATTCATCCTCATTATTTCAACCATAATCACTGGTCTCTCCAGCC < 2:1414193/100‑1 GCTCAACGTTTGTGAAAGTTACGGGCTGGAGAGACCAGTGATTATGGTTGAAATAATGAGGATGAATAAAACGCGGTAACTGTTATAGCACCACTTTGTTGCAGGACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4531793‑4531900‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgcaggacgTAATGAAGAGGGAGCGTCCTGCAACAAAGTGGTGCTATAACAGTTACCGCGTTTTATTCATCCTCATTATTTCAACCATAATCACTGGTCTCTCCAGCC < NC_000913/4531914‑4531816 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |