| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4035825 | 4 (0.040) | 34 (0.390) | 11/164 | NT | 90.2% | noncoding (295/1542 nt) | rrsA | 16S ribosomal RNA of rrnA operon |
| ? | NC_000913 | = 4035834 | NA (NA) | noncoding (304/1542 nt) | rrsA | 16S ribosomal RNA of rrnA operon | |||||
AGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCCTGATGCAG > NC_000913/4035727‑4035924 | agagGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCt < 1:245515/100‑1 (MQ=33)agagGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCt < 1:1245814/100‑1 (MQ=33)agagGGGTACCTTCGCGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTC < 2:1525731‑M1/99‑1 (MQ=255) gagGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTg < 2:800271/100‑1 (MQ=33) agGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTga < 1:97365/100‑1 (MQ=32) ggggTACCTTCGGGCCTCTTGCCATCGGGTTTGCGCAGATGGGTTTAGCTAGTCGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTgag > 2:384822/1‑100 (MQ=11) ggggTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTgag > 1:836501/1‑100 (MQ=32) ggggTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTgag < 1:974912/100‑1 (MQ=32) gggTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTgaga > 2:1227113/1‑100 (MQ=32) gggTACCTTCGGGCCTCTTGACATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTgaga > 2:1605379/1‑100 (MQ=17) ggTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCatcctc < 1:2426658‑M1/100‑7 (MQ=255) ggTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGagag < 1:1115947/100‑1 (MQ=32) ggTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGagag > 2:122685/1‑100 (MQ=32) tACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATTGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGa < 2:272423/100‑1 (MQ=11) tACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGa < 1:2496279/100‑1 (MQ=11) gggCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTTGTTGGTGGGGTAACGGCTCACCAAGGCGACGATCCCTAGCTGGTCatcctctcagaccag < 2:805997‑M1/100‑16 (MQ=255) ggCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTTGTTGGTGGGGTAACGGCTCACCAAGGCGACGATCCCTAGCTGGTCatcctctcagaccagc < 2:1007021‑M1/100‑17 (MQ=255) ggCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTTGTTGGTGGGGTAACGGCTCACCAAGGCGACGATCCCTAGCTGGTCatcctctcagaccagc < 1:310369‑M1/100‑17 (MQ=255) ggCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTTGTTGGTGGGGTAACGGCTCACCAAGGCGACGATCCCTAGCTGGTCatcctctcagaccagc < 1:2536802‑M1/100‑17 (MQ=255) ggCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTTGTTGGTGGGGTAACCGCTCACCAAGGCGACGATCCCTAGCTGGTCatcctctcagaccagc < 2:1229488‑M1/100‑17 (MQ=255) ggCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCatcctctcagaccagc < 1:271786‑M1/100‑17 (MQ=255) gcgtcttgcCAGCGGAGGTGCCCAGAGGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCatcctctcagaccagct < 2:2532048‑M1/97‑18 (MQ=255) gCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCatcctctcagaccagct < 1:2037209‑M1/100‑18 (MQ=255) gCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCatcctctcagaccagct < 1:989365‑M1/100‑18 (MQ=255) ctctTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCatcctctcagaccagctag < 1:1350359‑M1/100‑20 (MQ=255) ctctTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCatcctctcagaccagctag < 1:722839‑M1/100‑20 (MQ=255) ctctTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCatcctctcagaccagctag < 2:1082422‑M1/100‑20 (MQ=255) ctctTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCatcctctcagaccagctag < 1:173056‑M1/100‑20 (MQ=255) ctctTGCCATCAGATGTGCCCAGATGGGATTAGCTACTATGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCatcctctcagaccagcta < 2:699852‑M1/99‑19 (MQ=255) tctTGCCATCGGATGTGCCCAGATGGGATTAGCTTGTTGGTGGGGTAACGGCTCACCAAGGCGACGATCCCTAGCTGGTCatcctctcagaccagctagg < 2:200362‑M1/100‑21 (MQ=255) tctTGCCATCGGATGTGCCCAGATGGGATTAGCTTGTTGGTGGGGTAACGGCTCACCAAGGCGACGATCCCTAGCTGGTCatcctctcagaccagctagg < 1:23275‑M1/100‑21 (MQ=255) tctTGCCATCGGATGTGCCCAGATGGGATTAGCTTGTTGGTGGGGTAACGGCTCACCAAGGCGACGATCCCTAGCTGGTCatcctctcagaccagctagg < 1:1459419‑M1/100‑21 (MQ=255) tctTGCCATCGGATGTGCCCAGATGGGATTAGCTTGTTGGTGGGGTAACGGCTCACCAAGGCGACGATCCCTAGCTGGTCatcctctcagaccagctagg < 2:2523822‑M1/100‑21 (MQ=255) tctTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACTGCTCACCTAGGCGACGATCCCTAGCTGGTCatcctctcagaccagctagg < 2:1652906‑M1/100‑21 (MQ=255) tctTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTGGCTGGTCatcctctcagaccagctagg < 2:2412666‑M1/100‑21 (MQ=255) tctTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCatcctctcagaccagctagg < 1:1988896‑M1/100‑21 (MQ=255) tctTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCatcctctcagaccagctagg < 2:2290860‑M1/100‑21 (MQ=255) tctTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCatcctctcagaccagctagg < 1:1407923‑M1/100‑21 (MQ=255) tctTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCatcctctcagaccagctagg < 1:5289‑M1/100‑21 (MQ=255) tctTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCCAGGCGACGATCCCTAGCTGGTCatcctctcagaccagctacg < 1:1764277‑M1/100‑21 (MQ=255) tctTGCCATCAGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCatcctctcagaccagctagg < 2:2512659‑M1/100‑21 (MQ=255) ctTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCatcctctcagaccagctaggg < 1:2069140‑M1/100‑22 (MQ=255) ttGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCatcctctcagaccagctaggga < 2:869803‑M1/100‑23 (MQ=255) tGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCatcctctcagaccagctagggat < 2:1738379‑M1/100‑24 (MQ=255) aTCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCatcctctcagaccagctagggatcgtc < 1:1090901‑M1/100‑28 (MQ=255) gATGTGCCCAGATGGGATTAGCTTGTTGGTGGGGTAACGGCTCACCAAGGCGACGATCCCTAGCTGGTCatcctctcagaccagctagggatcgtcgcct < 1:1595686‑M1/100‑32 (MQ=255) cAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCatcctctcagaccagctagggatcgtcgcctaggtgagc < 1:1214562‑M1/100‑40 (MQ=255) aGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCatcctctcagaccagctagggatcgtcgcctaggtgagcc < 2:557734‑M1/100‑41 (MQ=255) gCTGGTCatcctctcagaccagctagggatcgtcgcctaggtgagccgttaccccacctactagctaatcccatctgggcacatccgatggcaagaggcc > 1:1789340‑M1/1‑7 (MQ=255) gCTGGTCatcctctcagaccagctagggatcgtcgcctaggtgagccgttaccccacctactagctaatcccatctgggcacatccgatggcaagaggcc < 2:291148‑M1/100‑94 (MQ=255) gCTGGTCatcctctcagaccagctagggatcgtcgcctaggtgagccgttaccccacctactagctaatcccatctgggcacatccgatggcaagaggcc > 1:2130146‑M1/1‑7 (MQ=255) gCTGGTCatcctctcagaccagctagggatcgtcgcctaggtgagccgttaccccacctactagctaatcccatctgggcacatccgatggcaagaggcc > 2:2372517‑M1/1‑7 (MQ=255) gCTGGTCatcctctcagaccagctagggatcgtcgcctaggtgagccgttaccccacctactagctaatcccatctgggcacatccgatggcaagaggcc < 2:2183295‑M1/100‑94 (MQ=255) gCTGGTCagcctctcagaccagctagggatcgtctcctaggtgagccgttaccccacctactagctaatcccatctgggcacatccgatggcaagaggcc < 1:982824‑M1/100‑94 (MQ=255) cTGGTCatcctctcagaccagctagggatcgtcgcctaggtgagccgttaccccacctactagctaatcccatctgggcacatccgatggcaagaggccc < 2:341501‑M1/100‑95 (MQ=255) cTGGTCatcctctcagaccagctagggatcgtcgcctaggtgagccgttaccccacctactagctaatcccatctgggcacatccgatggcaagaggccc < 2:1278740‑M1/100‑95 (MQ=255) cTGGTCatcctctcagaccagctagggatcgtcgcctaggtgagccgttaccccacctactagctaatcccatctgggcacatccgatggcaagaggccc > 1:1412230‑M1/1‑6 (MQ=255) cTGGTCatcctctcagaccagctagggatcgtcgcctaggtgagccgttaccccacctactagctaatcccatctgggcacatccgatggcaagaggccc < 2:2588255‑M1/100‑95 (MQ=255) cTGGTCatcctctcagaccagcgagggatcggcgcctaggtgagccgttaccccacctactagctaatcccatctgggcacatccgatggcaagaggccc < 2:1808484‑M1/100‑95 (MQ=255) tGGTCatcctctcagaccagctagggatcgtcgcctaggtgagccgttaccccacctactagctaatcccatctgggcacatccgatggcaagaggcccn < 2:842222‑M1/100‑96 (MQ=255) tGGTCatcctctcagaccagctagggatcgtcgcctaggtgagccgttaccccacctactagctaatcccatctgggcacatccgatggcaagaggcccg < 2:1486791‑M1/100‑96 (MQ=255) tGGTCatcctctcagaccagctagggatcgtcgcctaggtgagccgttaccccacctactagctaatcccatctgggcacatccgatggcaagaggcccg < 1:1207552‑M1/100‑96 (MQ=255) tGGTCatcctctcagaccagctagggatcgtcgcctaggtgagccgttaccccacctactagctaatcccatctgggcacatccgatggcaagaggcccg < 1:954332‑M1/100‑96 (MQ=255) tGGTCatcctctcagaccagctagggatcgtcgcctaggtgagccgttaccccacctactagctaatcccatctgggcacatccgatggcaagaggcccg < 1:2052338‑M1/100‑96 (MQ=255) ggTCatcctctcagaccagctagggatcgtcgcctaggtgagccgttaccccacctactagctaatcccatctgggcacatccgatggcaagaggcccga > 2:1460650‑M1/1‑4 (MQ=255) ggTCatcctctcagaccagctagggatcgtcgcctaggtgagccgttaccccacctactagctaatcccatctgggcacatccgatggcaagaggcccga < 2:2381347‑M1/100‑97 (MQ=255) ggTCatcctctcagaccagctagggatcgtcgcctaggtgagccgttaccccacctactagctaatcccatctgggcacatccgatggcaagaggcccga > 2:1249515‑M1/1‑4 (MQ=255) ggTCatcctctcagaccagctagggatcgtcgcctaggtgagccgttaccccacctactagctaatcccatctgggcacatccgatggcaagaggccc < 1:2521620‑M1/98‑95 (MQ=255) gTCatcctctcagaccagctagggatcgtcgcctaggtgagccgttaccccacctactagctaatcccatctgggcacatccgatggcaagaggcccgaa > 2:56118‑M1/1‑3 (MQ=255) gTCatcctctcagaccagctagggatcgtcgcctaggtgagccgttaccccacctactagctaatcccatctgggcacatccgatggcaagaggcccgaa > 1:698676‑M1/1‑3 (MQ=255) gTCatcctctcagaccagctagggatcgtcgcctaggtgagccgttaccccacctactagctaatcccatctgggcacatccgatggcaagaggcccgaa < 1:2109002‑M1/100‑98 (MQ=255) gTCatcctctcagaccagctagggatcgtcgcctaggtgagccgttaccccacctactagctaatcccatctgggcacatccgatggcaagaggcccgaa > 2:2453111‑M1/1‑3 (MQ=255) gTCatcctctcagaccagctagggatcgtcgcctaggtgagccgttaccccacctactagctaatcccatctgggcacatccgatggcaagaggcccgaa > 2:2294579‑M1/1‑3 (MQ=255) tCatcctctcagaccagctagggatcgtcgcctaggtgagccgttaccccacctactagctaatcccatctgggcacatccgatggcaagaggcccgacg > 2:424403‑M1/1‑2 (MQ=255) tCatcctctcagaccagctagggatcgtcgcctaggtgagccgttaccccacctactagctaatcccatctgggcacatccgatggcaagaggcccgaag > 1:2441558‑M1/1‑2 (MQ=255) tCatcctctcagaccagctagggatcgtcgcctaggtgagccgttaccccacctactagctaatcccatctgggcacatccgatggcaagaggcccgaag < 1:2498800‑M1/100‑99 (MQ=255) tCatcctctcagaccagctagggatcgtcgcctaggtgagccgttaccccacctaatagctaatcccatctgggcacatccgatggcaagaggcccgaag < 2:81218‑M1/100‑99 (MQ=255) tCatcctctcagaccagctagggatagtcgcctaggtgagccgttaccccacctactagctaatcccatctgggcacatccgatggcaagaggcccgaag < 1:2242748‑M1/100‑99 (MQ=255) catcctctcagaccagctagggatcgtcgcctaggtgagccgttaccccacctactagctaatcccatctgggcacatccgatggcaagaggcccgaagg < 2:84305‑M1/100‑100 (MQ=255) catcctctcagaccagctagggatcgtcgcctaggtgagccgttaccccacctactagctaatcccatctgggcacatccgatggcaagaggcccgaagg > 1:543480‑M1/1‑1 (MQ=255) catcctctcagaccagctagggatcgtcgcctaggtgagccgttaccccacctactagctaatcccatctgggcacatccgatggcaagaggcccgaagg > 1:860949‑M1/1‑1 (MQ=255) catcctctcagaccagctagggatcgtcgcctaggtgagccgttaccccacctactagctaatcccatctgggcacatccgatggcaagaggcccgaagg < 2:479759‑M1/100‑100 (MQ=255) catcctctcagaccagctagggatcgtcgcctaggtgagccgttaccccacctactagctaatcccatctgggcacatccgatggcaagaggcccgaagg > 1:1305695‑M1/1‑1 (MQ=255) catcctctcagaccagctagggatcgtcgcctaggtgagccgttaccccacctactagctaatcccatctgggcacatccgatggcaagaggcccgaagg < 1:845541‑M1/100‑100 (MQ=255) catcctctcagaccagctagggatcgtcgcctaggtgagccgttaccccacctactagctaatcccatctgggcacatccgatggcaagaggcccgaagg > 2:1830256‑M1/1‑1 (MQ=255) catcctctcagaccagctagggatcgtcgcctaggtgagccgttaccccacctactagctaatcccatctgggcacatccgatggcaagaggcccgaagg < 2:1252107‑M1/100‑100 (MQ=255) catcctctcagaccagctagggatcgtcgcctaggtgagccgttaccccacctactagctaatcccatctgggcacatccgatggcaagaggcccgaagg > 2:2019779‑M1/1‑1 (MQ=255) catcctctcagaccagctagggatcgtcgcctaggtgagccgttaccccacctactagctaatcccatctgggcacatccgatcgcaagaggcccg > 2:2405992‑M1/1‑1 (MQ=255) | AGAGGGGTACCTTCGGGCCTCTTGCCATCGGATGTGCCCAGATGGGATTAGCTAGTAGGTGGGGTAACGGCTCACCTAGGCGACGATCCCTAGCTGGTCTGAGAGGATGACCAGCCACACTGGAACTGAGACACGGTCCAGACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCGCAAGCCTGATGCAG > NC_000913/4035727‑4035924 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |