New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4601572 =119 (1.270)9 (0.110) 9/162 NT 8.1% intergenic (‑55/+52) dnaT/yjjB DNA biosynthesis protein (primosomal protein I)/DUF3815 family inner membrane protein
?NC_000913 4601608 = 95 (1.120)intergenic (‑91/+16) dnaT/yjjB DNA biosynthesis protein (primosomal protein I)/DUF3815 family inner membrane protein
Rejected: Frequency below cutoff threshold.

Only 100 of 153 total aligned reads displayed.

GGCGTCAATACCAACGACGTCCGGGGTCAAAACTCTGGAAGACATACTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATCCAGGAATGGAAAG  >  NC_000913/4601473‑4601671
                                                                                                   |                                                                                                   
ggCGTCAATACCAACGACGTCCGGGGTCAAAACTCTGGAAGACATACTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAac                                                                                                     <  1:2445087/100‑1 (MQ=255)
cagcttcatcgattgttggtgcgttatccatcggtctttccattcctggattatggttgtaccgcaagcgccctcgcgtataaaattgcctcgcttaagc                                                                                                     >  1:491271‑M1/100‑100 (MQ=255)
cagcttcatcgattgttggtgcgttatccatcggtctttccattcctggattatggttgtaccgcaagcgccctcgcgtataaaattgcctcgcttaagc                                                                                                     >  1:1611746‑M1/100‑100 (MQ=255)
  gcttcatcgattgttggtgcgttatccatcggtctttccattcctggattatggttgtaccgcaagcgccctcgcgtataaaattgcctcgcttaagcac                                                                                                   <  1:949529‑M1/3‑1 (MQ=255)
    ttcatcgattgttggtgcgttatccatcggtctttccattcctggattatggttgtaccgcaagcgccctcgcgtataaaattgcctcgcttaagCacac                                                                                                 >  2:657754‑M1/96‑100 (MQ=255)
    ttcatcgattgttggtgcgttatccatcggtctttccattcctggattatggttgtaccgcaagcgccctcgcgtataaaattgcctcgcttaagCacac                                                                                                 >  2:175404‑M1/96‑100 (MQ=255)
      aaTACCAACGACGTCCGGGGTCAAAACTCTGGAAGACATACTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACgg                                                                                               >  1:1494895/1‑100 (MQ=255)
        gcgattgttggtgcgttatccatcggtctttccattcctggattatggttgtaccgcaagcgccctcgcgtataaaattgcctcgcttaagCACACgg                                                                                               <  2:1031079‑M1/7‑1 (MQ=255)
         aCCAACGACGTCCGGGGTCAAAACTCTGGAAGACATACTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACggagg                                                                                            <  1:2361327/100‑1 (MQ=255)
          ccAACGACGTCCGGGGTCAAAACGCTGGAAGACATACTGTTTCTCAAATATGGATCGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACggagg                                                                                            <  2:1511/99‑1 (MQ=255)
           cAACGACGTCCGGGGTCAAAACTCTGGAAGACATACTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGgaggag                                                                                          >  1:1331085/1‑100 (MQ=255)
            aaCGACGTCCGGGGTCAAAACTCTGGAAGACATACTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGgaggaga                                                                                         <  1:957001/100‑1 (MQ=255)
            aaCGACGTCCGGGGTCAAAACTCTGGAAGACATACTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGgaggaga                                                                                         <  2:416681/100‑1 (MQ=255)
               gacgTCCGGGGTCAAAACTCTGGAAGACATACTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGgaggagagga                                                                                      <  2:1351302/100‑1 (MQ=255)
                acgTCCGGGGTCAAAACTCTGGAAGACATACTGTTTCTCAAATATGGAACGATGAAAGAGAAGGGAGATAACTTTTATAGTAATACACGGaggagaggag                                                                                     >  2:377968/1‑100 (MQ=255)
                   tCCGGGGTCAAAACTCTGGAAGACATACTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCt                                                                                  >  2:1806701/1‑100 (MQ=255)
                   tCCGGGGTCAAAACTCTGGAAGACATACTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCt                                                                                  >  2:264099/1‑100 (MQ=255)
                      ggggTCAAAACTCTGGAAGACATACTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGtc                                                                               <  2:1306531/100‑1 (MQ=255)
                       gggTCAAAACTCTGGAAGACATACTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGtct                                                                              <  2:127957/100‑1 (MQ=255)
                       gggTCAAAACTCTGGAAGACATACTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGtct                                                                              <  1:2078887/100‑1 (MQ=255)
                        ggTCAAAACTCTGGAAGACATACTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGtctc                                                                             <  1:29375/100‑1 (MQ=255)
                        ggTCAAAACTCTGGAAGACATACTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGtctc                                                                             >  1:916578/1‑100 (MQ=255)
                         gTCAAAACTCTGGAAGACATACTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGtctct                                                                            <  2:1327010/100‑1 (MQ=255)
                         gTCAAAACTCTGGAAGACATACTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGtctct                                                                            <  1:2185321/100‑1 (MQ=255)
                         gTCAAAACTCTGGAAGACATACTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGtctct                                                                            <  2:67352/100‑1 (MQ=255)
                         gTCAAAACTCTGGAAGACATACTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGtctct                                                                            <  2:1950476/100‑1 (MQ=255)
                           naaaaCTCTGGAAGACATACTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCa                                                                          >  1:1252839/2‑100 (MQ=255)
                            aaaaCTCTGGAAGACATACTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCAt                                                                         >  1:367398/1‑100 (MQ=255)
                               cggtctttccattcctggattatggttgtaccgcaagcgccctcgcgtataaaattgcctcgcttaagCACACGGAGGAGAGGAGGCTGTCTCTCATCCg                                                                      >  1:1932751‑M1/69‑100 (MQ=255)
                               aCTCTGGAAGTCATACTGTGTGTCGAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACCCGGAGGTGAGGAGGCGGTCTCTCATCCg                                                                      <  2:2237295/100‑1 (MQ=255)
                                 tctGGAAGACATACTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCgtg                                                                    <  2:1066521/100‑1 (MQ=255)
                                  ctGGAAGACATACTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCgtgt                                                                   <  1:1883314/100‑1 (MQ=255)
                                  ctGGAAGACATACTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCgt                                                                     >  2:1791182/1‑98 (MQ=255)
                                   tGGAAGACATACTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGtgtg                                                                  <  1:405701/100‑1 (MQ=255)
                                   ctttccattcctggattatggttgtaccgcaagcgccctcgcgtataaaattgcctcgcttaagCACACGGAGGAGAGGAGGCTGTCTCTCATCCGtgtg                                                                  >  2:2088699‑M1/65‑100 (MQ=255)
                                    ggAAGACATACTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGc                                                                 <  1:1625436/100‑1 (MQ=255)
                                    ggAAGACATACTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGc                                                                 >  1:1306482/1‑100 (MQ=255)
                                     ttccattcctggattatggttgtaccgcaagcgccctcgcgtataaaattgcctcgcttaagCACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGc                                                                 >  1:478385‑M1/63‑99 (MQ=255)
                                     gAAGACATACTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCt                                                                <  1:634567/100‑1 (MQ=255)
                                      tccattcctggattatggttgtaccgcaagcgccctcgcgtataaaattgcctcgcttaagCACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCtt                                                               >  1:617251‑M1/62‑100 (MQ=255)
                                      aaGACATACTGTTTCTCAAATCTGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGc                                                                 <  1:2216467/98‑1 (MQ=255)
                                       acaCATACTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTa                                                              <  1:1388833/98‑1 (MQ=255)
                                       aGACATACTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTa                                                              <  1:2143802/100‑1 (MQ=255)
                                        gACATACTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTaa                                                             >  2:2124785/1‑100 (MQ=255)
                                            tACTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGa                                                         >  1:511428/1‑100 (MQ=255)
                                            tACTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGa                                                         >  2:700967/1‑100 (MQ=255)
                                             aCTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAg                                                        <  2:2068965/100‑1 (MQ=255)
                                              tggattatggttgtaccgcaagcgccctcgcgtataaaattgcctcgcttaagCACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAgg                                                       >  1:1598091‑M1/54‑100 (MQ=255)
                                              cTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAgg                                                       >  1:305801/1‑100 (MQ=255)
                                              cTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAgg                                                       <  1:1628229/100‑1 (MQ=255)
                                                  ttCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAAt                                                   >  2:324922/1‑100 (MQ=255)
                                                   tctcAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAAtt                                                  >  2:2008669/1‑100 (MQ=255)
                                                    ctcAAATATGGACCGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGGGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAAGCAAttt                                                 >  2:2125304/1‑100 (MQ=255)
                                                    ctcAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAAttt                                                 >  1:689937/1‑100 (MQ=255)
                                                      cAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTta                                               >  1:1255752/1‑100 (MQ=255)
                                                      cAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTta                                               >  2:25520/1‑100 (MQ=255)
                                                      cAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTta                                               >  1:2338413/1‑100 (MQ=255)
                                                       aaaTATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTtat                                              >  1:228612/1‑100 (MQ=255)
                                                         tccgatctcGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATAc                                            <  1:2194859/92‑1 (MQ=255)
                                                         atatGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATAc                                            <  2:1376571/100‑1 (MQ=255)
                                                          tatGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATAcg                                           >  2:2189509/1‑100 (MQ=255)
                                                            ttgAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATAcgcg                                         <  2:1579162/98‑1 (MQ=255)
                                                             ggAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGa                                        >  1:2001675/1‑100 (MQ=255)
                                                              gAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAg                                       <  2:228609/100‑1 (MQ=255)
                                                                 cGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATAcagatcgga                                    >  2:2194847/1‑92 (MQ=255)
                                                                 cGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGgc                                    >  1:580927/1‑100 (MQ=255)
                                                                   aTGAACGAGAAGGGATATAACTTTTATAGTAACATACGGAGGAGAGGAGGCTGTCTGTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGgcgc                                  >  2:1169058/1‑100 (MQ=255)
                                                                    tGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCt                                 >  1:801232/1‑100 (MQ=255)
                                                                    tGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCt                                 <  1:1803339/100‑1 (MQ=255)
                                                                     gAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCtt                                >  1:1956336/1‑100 (MQ=255)
                                                                      aatgagaAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTATGCTTACGCGAGGCAATTTTATACGCGAGGGCGCTTg                               >  1:103849/4‑100 (MQ=255)
                                                                      aaCGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTg                               >  2:729187/1‑100 (MQ=255)
                                                                      aaCGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTg                               <  2:918109/100‑1 (MQ=255)
                                                                       aCGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGc                              <  2:630113/100‑1 (MQ=255)
                                                                          agaAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGt                           <  1:373094/100‑1 (MQ=255)
                                                                          agaAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGt                           <  1:199633/100‑1 (MQ=255)
                                                                             aGGGAGATAACTGTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCCAGGGCGCCTGCGGTaa                         >  2:960071/1‑98 (MQ=255)
                                                                               ggAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAAc                      <  2:1059563/100‑1 (MQ=255)
                                                                                gagaTAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAAcc                     <  2:1975946/100‑1 (MQ=255)
                                                                                  gaTAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCAt                   >  1:1149992/1‑100 (MQ=255)
                                                                                  aaattgcctcgcgtaagCACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCa                    >  2:633855‑M1/18‑99 (MQ=255)
                                                                                    tAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATaa                 >  1:2435892/1‑100 (MQ=255)
                                                                                    tAACTTTTATAGTAACACACGGAGGAGAAGACGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCAGTGCAACCATaa                 >  2:292804/1‑100 (MQ=255)
                                                                                    tAACTTTTATAGTAACACACCGCGGAGAGCACGCTGTCTCTCCGCCGTGTGCTTAATCGAGGCAATTTTATACGCGCGGGCGCCTGCTGTACAACCATaa                 <  2:2023620/100‑1 (MQ=255)
                                                                                     aaCTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATaa                 >  1:1959580/1‑99 (MQ=255)
                                                                                       cTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATcc              <  2:1944264/100‑1 (MQ=255)
                                                                                       cTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATcc              >  1:1856018/1‑100 (MQ=255)
                                                                                        ttttATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATCCa             >  2:840111/1‑100 (MQ=255)
                                                                                         tttATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATCCAg            <  2:2023016/100‑1 (MQ=255)
                                                                                          ttATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATCCAgg           <  1:1695901/100‑1 (MQ=255)
                                                                                            gtaGTAACACACGGAGGGGAGGAGGGTGTCTCACGTCCGTGTGCTGAAGCGAGCACATGGTATACGCTGGGGCGCTTGCGGGGCAAACAGAAt                >  2:2475001/2‑93 (MQ=255)
                                                                                            ataGTAACACACGGAGGAGAGGATGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGTTTGCGGTACAACCATAATCCAg            <  2:517581/97‑1 (MQ=255)
                                                                                             taGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATCCAGGAAt        >  1:2600934/1‑100 (MQ=255)
                                                                                             taGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATCCAGGAAt        >  2:1013882/1‑100 (MQ=255)
                                                                                              aGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATCCAGGAATg       <  1:343270/100‑1 (MQ=255)
                                                                                                 aaCATACGGAGGAGAGGGGGCTGTCTCTCACCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTGGCGTTACAACCATAATCCAGGAATGGaa    <  2:520002/100‑1 (MQ=255)
                                                                                                 aaCACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATCCAGGAATGGaa    <  1:2099237/100‑1 (MQ=255)
                                                                                                 aaCACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATCCAGGAATGGaa    <  1:852641/100‑1 (MQ=255)
                                                                                                  acacacGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATCCAGGAATGGaaa   <  1:44503/100‑1 (MQ=255)
                                                                                                   CACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATCCAGGAATGGAAAg  >  1:2251808‑M1/1‑100 (MQ=255)
                                                                                                   |                                                                                                   
GGCGTCAATACCAACGACGTCCGGGGTCAAAACTCTGGAAGACATACTGTTTCTCAAATATGGAACGATGAACGAGAAGGGAGATAACTTTTATAGTAACACACGGAGGAGAGGAGGCTGTCTCTCATCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATCCAGGAATGGAAAG  >  NC_000913/4601473‑4601671

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.