New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 501448 =NA (NA)6 (0.070) 6/164 NT NA noncoding (5/84 nt) REP46 (repetitive extragenic palindromic) element; contains 2 REP sequences REP46 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 501478 = NA (NA)noncoding (35/84 nt) REP46 (repetitive extragenic palindromic) element; contains 2 REP sequences REP46 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 124 total aligned reads displayed.

GGCTTGCCGGAGCGTGAAGACAGCCTGGAAGAGTCTTACTGGGATCGTTAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTTACCCCGTCACCACC  >  NC_000913/501379‑501577
                                                                                                   |                                                                                                   
ggCTTGCCGGAGCGTGAAGACAGCCTGGAAGAGTCTTACTGGGATCGTTAAGTTAGCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCa                                                                                                     <  2:255617/100‑1 (MQ=255)
 gCTTGCCGGAGCGTGAAGACAGCCTGGAAGAGTCTTACTGGGATCGTTAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCAt                                                                                                    >  1:2093207/1‑100 (MQ=255)
 gCTTGCCGGAGCGTGAAGACAGCCTGGAAGAGTCTTACTGGGATCGTTAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCAt                                                                                                    >  2:691411/1‑100 (MQ=255)
 gCTTGCCGGAGCGTGAAGACAGCCTGGAAGAGTCTTACTGGGATCGTTAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCAt                                                                                                    >  2:225258/1‑100 (MQ=255)
    tGCCGGAGCGTGAAGACAGCCTGGAAGAGTCTTACTGGGATCGTTAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTg                                                                                                 <  1:29198/100‑1 (MQ=255)
    aaatatgaaaaatatgtaggcatgataagacgcgccagcgtcgcatcaggcatcgagagccaaatGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTg                                                                                                 >  1:305046‑M1/66‑100 (MQ=255)
      ccGGGGCGTGAAGACAGCCTGGAAGAGTCTTACTGGGATCGTTAAGTTATCGTAGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTg                                                                                                 >  2:845425/1‑98 (MQ=255)
       tatgaaaaatatgtaggcatgataagacgcgccagcgtcgcatcaggcatcgagagccaaatGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGct                                                                                              >  1:1916913‑M1/63‑100 (MQ=255)
         gAGCGTGAAGACAGCCTGGAAGAGTCTTACTGGGATCGTTAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCGCGCCGCATCTGGCATTTGGctc                                                                                             <  2:77446/99‑1 (MQ=255)
          aGCGTGAAGACAGCCTGGAAGAGTCTTACTGGGATCGTTAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCtctc                                                                                           <  1:1727782/100‑1 (MQ=255)
          aGCGTGAAGACAGCCTGGAAGAGTCTTACTGGGATCGTTAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCtctc                                                                                           <  2:1729837/100‑1 (MQ=255)
           gCGTGAAGACAGCCTGGAAGCGTCTTACTGGGATCGTTAAGTTATCGTCGGTTCGTAGGCAAGATAAGGCATTCACTCTTCATCTGGCATTTGGCTCTCg                                                                                          <  2:479685/100‑1 (MQ=255)
              tGAAGACAGCCTGGAAGAGTCTTACTGGGATCGTTAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATg                                                                                       >  2:818517/1‑100 (MQ=255)
              tGAAGACAGCCTGGAAGAGTCTTACTGGGATCGTTAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATg                                                                                       <  1:2515631/100‑1 (MQ=255)
              tGAAGACAGCCTGGAAGAGTCTTACTGGGATCGTTAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATg                                                                                       <  1:2515568/100‑1 (MQ=255)
                aaGAGAGCCTGGAAGAGTCTTACCGGGATCTGTAAGTTCTCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGc                                                                                      <  2:1162044/99‑1 (MQ=37)
                   gtaggcatgataagacgcgccagcgtcgcatcaggcatcgagagccaaatgccagataaggcgttcacgccgcatctggcATTTGGCTCTCGATGCCTGa                                                                                  <  1:639575‑M2/20‑1 (MQ=255)
                    cAGCCTGGAAGAGTCTTACTGGGATCGTTAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGAt                                                                                 >  2:622763/1‑100 (MQ=255)
                      gCCTGGAAGAGTCTTACTGGGATCGTTAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGc                                                                               <  1:2172427/100‑1 (MQ=255)
                      gCCTGGAAGAGTCTTACTGGGATCGTTAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGc                                                                               >  1:936907/1‑100 (MQ=255)
                      gCCTGGAAGAGTCTTACTGGGATCGTTAACTTATCGCCGGTTCGTAGGCCAGATCAGGCGTTCACGCCGCATCTGGCACTTGGCTCCCGATGCCTgct                                                                                 >  2:1216193/1‑96 (MQ=37)
                         tGGAAGAGTCTTACTGGGATCGTTAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGAc                                                                            >  2:596793/1‑100 (MQ=255)
                          ggAAGAGTCTTACTGGGATCGTTAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACg                                                                           <  1:2407689/100‑1 (MQ=255)
                                ggcTTACTGGGATCGTTAAGTGATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCAGCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGgcg                                                                     <  2:62250/98‑1 (MQ=255)
                                gTCTTACTGGGATCGTTAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGgcg                                                                     >  1:979749/1‑100 (MQ=255)
                                gTCTTACTGGGATCGTTAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGgcg                                                                     <  2:2297349/100‑1 (MQ=255)
                                gTCTTACTGGGATCGTTAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGgcg                                                                     >  1:1884941/1‑100 (MQ=255)
                                gTCTTACTGGGATCGTTAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGgcg                                                                     <  1:1650200/100‑1 (MQ=255)
                                 tCTTACTGGGATCGTTAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGgcgc                                                                    <  1:1991981/100‑1 (MQ=255)
                                     aCTGGGATCGTTAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGGTGCCTGGTGCGCCGCTGGCGCGTc                                                                 >  1:53024/1‑99 (MQ=255)
                                     aCTGGGATCGTTAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCt                                                                <  1:955187/100‑1 (MQ=255)
                                      cTGGGATCGTTAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCtt                                                               >  2:1920527/1‑100 (MQ=255)
                                      cTGGGATCGTTAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCtt                                                               >  1:885379/1‑100 (MQ=255)
                                       tGGGATCGTTAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTa                                                              >  2:189984/1‑100 (MQ=255)
                                        gggATCGTTAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTAt                                                             <  1:805703/100‑1 (MQ=255)
                                         ggATCGTTAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATc                                                            >  1:198906/1‑100 (MQ=255)
                                         ggATCGTTAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATc                                                            >  2:2577816/1‑100 (MQ=255)
                                            tCGTTAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTTGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATg                                                         <  2:494515/100‑1 (MQ=255)
                                            tCGTTAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATg                                                         <  2:152125/100‑1 (MQ=255)
                                             cGTTAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGc                                                        >  2:1252425/1‑100 (MQ=255)
                                             cGTTAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGc                                                        <  1:848385/100‑1 (MQ=255)
                                             cGTTAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGc                                                        >  2:2048001/1‑100 (MQ=255)
                                              gTTAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGcc                                                       >  1:1576236/1‑100 (MQ=255)
                                              gTTAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGcc                                                       <  1:1195359/100‑1 (MQ=255)
                                                tAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTa                                                     <  2:736407/100‑1 (MQ=255)
                                                 tcaggcatcgagagccaaatGCCAGATGCGGCGTGAACGCCTTATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTAc                                                    <  1:639575‑M1/80‑1 (MQ=255)
                                                 aaGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTAc                                                    >  1:1463067/1‑100 (MQ=255)
                                                  aGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACa                                                   <  1:2159867/100‑1 (MQ=255)
                                                         gtcgGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATAttttt                                            >  2:1288809/1‑100 (MQ=255)
                                                         gtcgGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATAttttt                                            >  2:1289177/1‑100 (MQ=255)
                                                          tcgGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTc                                           <  1:1327276/100‑1 (MQ=255)
                                                               tCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATAtt                                      <  2:2093196/100‑1 (MQ=255)
                                                                caaatgccagatgcggcgtgaacgccttatctggcATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATAttt                                     >  1:305046‑M2/36‑100 (MQ=255)
                                                                cGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATAttt                                     >  1:1915032/1‑100 (MQ=255)
                                                                cGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATAttt                                     >  1:1193192/1‑100 (MQ=255)
                                                                cGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATAttt                                     >  2:2406041/1‑100 (MQ=255)
                                                                cGTAGGCCAGATAAGGCGTTCACGCCGAATCTGGCATTTGGCTCTCGATGCCTAATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATAttt                                     >  2:2377860/1‑100 (MQ=255)
                                                                 gTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATAtttt                                    <  1:1982710/100‑1 (MQ=255)
                                                                 gTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATAtgtt                                    >  1:1686914/1‑100 (MQ=255)
                                                                  tAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTa                                   <  2:101763/100‑1 (MQ=255)
                                                                  tAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTa                                   <  2:1252717/100‑1 (MQ=255)
                                                                   aGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGTGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTAc                                  <  1:700127/100‑1 (MQ=255)
                                                                   aGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTAc                                  <  2:1314805/100‑1 (MQ=255)
                                                                   aGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTAc                                  <  1:1880258/100‑1 (MQ=255)
                                                                   aGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTAc                                  <  2:1268638/100‑1 (MQ=255)
                                                                   aGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCCGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTAc                                  <  2:1233667/100‑1 (MQ=255)
                                                                    ggCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACa                                 >  2:2529136/1‑100 (MQ=255)
                                                                    ggCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACa                                 <  1:1299420/100‑1 (MQ=255)
                                                                    ggCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACa                                 >  1:2299618/1‑100 (MQ=255)
                                                                    ggCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACa                                 >  2:1397659/1‑100 (MQ=255)
                                                                    ggCAAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGACTGATGCGAGGGTGGCGCGTCTTATCATGCCTATATATTTTTAATATTTTACa                                 >  1:2501898/1‑100 (MQ=25)
                                                                     gccagatgcggcgtgaacgccttatctggcATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACAt                                >  1:1594645‑M2/31‑100 (MQ=255)
                                                                     GCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTCCATATTTTTACTATTTTACAt                                <  2:707839‑M1/100‑1 (MQ=255)
                                                                     GCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACAt                                >  2:2136090‑M1/1‑100 (MQ=255)
                                                                     GCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCCTATCATGCCTCCATATTTTTCCTCTTTTACAt                                <  2:610260‑M1/100‑1 (MQ=255)
                                                                      ccagatgcggcgtgaacgccttatctggcATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATc                               >  1:1385864‑M2/30‑100 (MQ=255)
                                                                       cagatgcggcgtgaacgccgcatctggcATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCTTATTTTAGAt                                >  2:770985‑M2/29‑98 (MQ=255)
                                                                        AGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTTTTATCATGCCTACATATTTTTCATATTTTACATCCg                             >  1:1837692‑M1/1‑100 (MQ=255)
                                                                         GATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCgg                            >  1:189986‑M1/1‑100 (MQ=255)
                                                                          ATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGc                           >  1:770200‑M1/1‑100 (MQ=255)
                                                                           TAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCa                          <  1:739862‑M1/100‑1 (MQ=255)
                                                                           TAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGACTTATCATGCCCACCTATTTTTCATATTTTACATCCGGc                           <  2:1046730‑M1/99‑1 (MQ=255)
                                                                            aaGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCaa                         <  2:441883/100‑1 (MQ=255)
                                                                            aaGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCaa                         >  1:228819/1‑100 (MQ=255)
                                                                              ggCGTTCCCGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTTATATTTTACATCCGGGAacc                       <  2:1127649/100‑1 (MQ=255)
                                                                              ggCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATTCGACTCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGc                           <  2:2085857/96‑1 (MQ=255)
                                                                              ggCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAacc                       >  1:1081391/1‑100 (MQ=255)
                                                                                      cgccgcATCTGGCATTTGGCTCTCGATGCCTGATGCAACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTTa               >  1:1835364/1‑100 (MQ=255)
                                                                                       gccgcATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTTAc              >  2:1600567/1‑100 (MQ=255)
                                                                                        ccgcATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTTAcc             <  1:122864/100‑1 (MQ=255)
                                                                                         ngcATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTTAccc            >  2:2453641/2‑100 (MQ=255)
                                                                                           cATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTTACCCCg          >  1:1007842/1‑100 (MQ=255)
                                                                                           cATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCGCTTAcccc           >  2:679192/1‑99 (MQ=255)
                                                                                           cATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGCCGCGTCTTATCATGCCTACTTATTTTTCATATTTTACATCCGGCAACCACCGTTTACCCCg          <  2:1420825/100‑1 (MQ=255)
                                                                                             tctggcATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTTACCCCGTc        >  2:276345‑M2/7‑100 (MQ=255)
                                                                                              ctggcATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTTACCCCGTca       <  2:1915023‑M2/95‑1 (MQ=255)
                                                                                              ctggcATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTTACCCCGTca       <  2:1512755‑M2/95‑1 (MQ=255)
                                                                                              ctggcATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTTACCCCGTca       <  1:2343154‑M2/95‑1 (MQ=255)
                                                                                              ctggcATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTTACCCCGTca       <  1:928849‑M2/95‑1 (MQ=255)
                                                                                                   aTTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTCCCATATTTTACATCCGGCAACCACCGTTTACCCCGTCaccacc  <  2:522387/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
GGCTTGCCGGAGCGTGAAGACAGCCTGGAAGAGTCTTACTGGGATCGTTAAGTTATCGTCGGTTCGTAGGCCAGATAAGGCGTTCACGCCGCATCTGGCATTTGGCTCTCGATGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACATATTTTTCATATTTTACATCCGGCAACCACCGTTTACCCCGTCACCACC  >  NC_000913/501379‑501577

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.