| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 580918 = | 38 (0.410) | 7 (0.080) | 3/166 | NT | 16.6% | coding (85/546 nt) | nohD | DLP12 prophage; DNA packaging protein |
| ? | NC_000913 | = 1636304 | 35 (0.400) | pseudogene (64/528 nt) | nohQ | pseudogene, Qin prophage; Phage DNA packaging protein Nu1 family;Phage or Prophage Related; DNA packaging protein NU1 homolog from lambdoid prophage Qin | |||||
ATCCCTTTCGGCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCTGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCA‑TTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACG > NC_000913/1636206‑1636403 | aTCCCTTTCGGCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCTGCCAg < 1:1878410‑M2/100‑2 (MQ=255) tCCCTTTCGGCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCTGCCAgt > 1:1427063‑M2/1‑98 (MQ=255) ccTTTCGGCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCTGCCAgttc < 2:2549814‑M2/100‑5 (MQ=255) ccTTTCGGCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCTGCCAgttc > 1:603082‑M2/1‑96 (MQ=255) cTTTCGGCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCTGCCAgttct > 1:1112285‑M2/1‑95 (MQ=255) cTTTCGGCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCTGCCAgttct < 1:783584‑M2/100‑6 (MQ=255) tttCGGCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCTGCCAgttctg > 2:1498846‑M2/1‑94 (MQ=255) cGGCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCTGCCAGTTCTGAAt < 1:554065/100‑1 (MQ=38) tACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTCCCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCTGCCAGTTCTGAATAGTAc < 1:8858/100‑1 (MQ=255) ccATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCTGCCAGTTCTGAATGGTACgg > 1:2502289/1‑100 (MQ=38) ccATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCTGCCAGTTCTGAATGGTACgg > 2:2051100/1‑100 (MQ=35) cATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCTGCCAGTTCTGAATGGTACGGa > 2:2393446/1‑100 (MQ=38) cATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCTGCCAGTTCTGAATGGTACGGa < 2:447741/100‑1 (MQ=35) ttCTTATAACGGCTGCAGAGTCATAAAGCTCCTGATTCCCCTTGCCACCGCCTCGCACATCGGGCATTCCCTGTTCCTGCCATTTTTGAATGGTACgg < 2:1021223/97‑1 (MQ=11) ttATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCTGCCAGTTCTGAATGGTACGGATACt < 1:2476293/100‑1 (MQ=33) ttATAACGGCGGCAGAGTCATAAAGCACCTCATTACCATTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCTGCCAGTTCTGAATGGTATGGATACt > 2:1394939/1‑100 (MQ=12) taACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCTGCAAGTTCTGAATGGTAAGGATACTCGc > 1:2171387/1‑100 (MQ=9) gCCTCGCAGAACGGGCATTCCCTGTTCCTGCCAgttctgcgaggcggtggcaagggtaatgaggtgctttatgactctgccgccgtcataaaatggtatg < 1:1578834‑M2/100‑68 (MQ=255) gCCTCGCAGAACGGGCATTCCCTGTTCCTGCCAgttctgcgaggcggtggcaagggtaatgaggtgctttatgactctgccgccgtcataaaatggtatg < 1:1864711‑M2/100‑68 (MQ=255) gCCTCGCAGAACGGGCATTCCCTGTTCCTGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCA‑TTGtt < 2:2440670/100‑1 (MQ=31) ccTCGCAGAACGGGCATTCCCTGTTCCTGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCA‑TTGt < 2:1470893/98‑1 (MQ=11) cTCGCAGAACGGGCATTCCCTGTTCCTGCCAgttctgcgaggcggtggcaagggtaatgaggtgctttatgactctgccgccgttataagatggtatgcc < 1:578518‑M2/100‑70 (MQ=255) tCGCAGAACGGGCATTCCCTGTTCCTGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCA‑TTGTTCAt < 1:258893/100‑1 (MQ=35) cGCAGAACGGGCATTCCCTGTTCCTGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCA‑TTGTTCAtt > 2:2148911/1‑100 (MQ=35) cGCAGAACGGGCATTCCCTGTTCCTGCAAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCA‑TTGTTAAtt > 2:1498114/1‑100 (MQ=12) cGCAGAACGGACATTCCCTGTTCCTGCCAGTTCTGAATGGTACGGATGCTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCA‑TTGTTCAtt > 2:628620/1‑100 (MQ=255) gCAGAACGGGCATTCCCTGTTCCTGCCAgttctgcgaggcggtggcaagggtaatgaggtgctttatgactctgccgccgttataagatggtatgccgaa < 1:87952‑M2/100‑73 (MQ=255) gCAGAACGGGCATTCCCTGTTCCTGCCAgttctgcgaggcggtggcaagggtaatgaggtgctttatgactctgccgccgtcataaaatggtatgccgaa < 1:2066369‑M2/100‑73 (MQ=255) gCAGAACGGGCATTCCCTGTTCCTGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCA‑TTGTTCATTc < 1:1050366/100‑1 (MQ=38) gCAGAACGGGCATTCCCTGTTCCTGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCA‑TTGTTCATTc > 1:351163/1‑100 (MQ=38) gCAGAACGGGCATTCCCTGTTCCTGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCA‑TTGTTCATTc > 1:351571/1‑100 (MQ=38) cAGAACGGGCATTCCCTGTTCCTGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCA‑TTGTTCATTcc > 1:1132252/1‑100 (MQ=38) aGAACGGGCATTCCCTGTTCCTGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCA‑TTGTTCATTCCa > 2:2372199/1‑100 (MQ=38) aGAACGGGCATTCCCTGTTCCTGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCA‑TTGTTCATTCCa > 1:2336132/1‑100 (MQ=38) gAACGGGCATTCCCTGTTCCTGCCAgttctgcgaggcggtggcaagggtaatgaggtgctttatgactctgccgccgtcataaaatggtatgccgaaagg < 1:1143045‑M2/100‑76 (MQ=255) gAACGGGCATTCCCTGTTCCTGCCAgttctgcgaggcggtggcaagggtaatgaggtgctttatgactctgccgccgtcataaaatggtatgccgaaagg < 1:1139490‑M2/100‑76 (MQ=255) gAACGGGCATTCCCTGTTCCTGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCA‑TTGTTCATTCCAc < 1:318591/100‑1 (MQ=38) cGGGCATTCCCTGTTCCTGCCAGTTCTGAATGGTACGGATACTCGCACCGACAATGTCAGCCAGCTGATTTTTGTTGACTTCCC‑TTGTTCATTCCCCGGc > 2:790692/1‑100 (MQ=11) cGGGCATTCCCTGTTCCTGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCA‑TTGTTCATTCCACGGc < 2:605996/100‑1 (MQ=38) cGGGCATTCCCTGTTCCTGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCA‑TTGTTCATTCCACGGc < 1:2393459/100‑1 (MQ=40) gggCATTCCCTGTTCCTGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCA‑TTGTTCATTCCACGGcc < 1:931643/100‑1 (MQ=40) ttCCCTGTTCCTGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTCGTTGACTTCCA‑TTGTTCATTCCACGGCCaaaaa > 2:1060039/1‑100 (MQ=255) tCCCTGTTCCTCCCAGTTCTGAATGGTACGAATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCA‑TTGTTCATTCCACGGCCAAAAAc < 1:2434133/100‑1 (MQ=255) ccTGTTCCTGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCA‑TTGTTCATTCCACGGCCAAAAACag < 2:360045/100‑1 (MQ=255) cTGTTCCTGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCA‑TTGTTCATTCCACGGCCAAAAACaga > 2:997462/1‑100 (MQ=255) cTGTTCCTGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCA‑TTGTTCATTCCACGGCCAAAAACaga < 2:766929/100‑1 (MQ=255) tGTTCCTGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCA‑TTGTTCATTCCACGGCCAAAAACagag < 2:2105506/100‑1 (MQ=255) ccTGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGAATTCCA‑TTGTTCATTCCACGGCCAAAAACAGAGAAAg > 2:2456428/1‑100 (MQ=255) cggCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCA‑TTGTTCATTCCACGGCCAAAAACAGAGAAAgg < 2:1132247/98‑1 (MQ=255) cTGCCAGTTCTGAATGGTACGGATTCTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCA‑TTGTTCATTCCACGGCCAAAAACAGAGAAAg < 2:521494/99‑1 (MQ=255) cTGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCATTTGTTCATTCCACGGCCAAAAACAGAGAAAg > 2:1938088/1‑100 (MQ=255) tGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCA‑TTGTTCATTCCACGGCCAAAAACAGAGCAAGGa > 1:1842576/1‑100 (MQ=255) gCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCA‑TTGTTCATTCCACGGCCAAAAACAGAGAAAGGaa > 1:37377/1‑100 (MQ=255) gCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCA‑TTGTTCATTCCACGGCCAAAAACAGAGAAAGGaa > 1:1091159/1‑100 (MQ=255) aGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCA‑TTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACg > 2:926718/1‑100 (MQ=255) | ATCCCTTTCGGCATACCATCTTATAACGGCGGCAGAGTCATAAAGCACCTCATTACCCTTGCCACCGCCTCGCAGAACGGGCATTCCCTGTTCCTGCCAGTTCTGAATGGTACGGATACTCGCACCGAAAATGTCAGCCAGCTGCTTTTTGTTGACTTCCA‑TTGTTCATTCCACGGCCAAAAACAGAGAAAGGAAACG > NC_000913/1636206‑1636403 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |