BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3706060	NA (NA)	5 (0.060)	4/164	NT	NA	noncoding (98/98 nt)	RIP266 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP266 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
*	?	NC_000913	3740989 =	NA (NA)	5 (0.060)	4/164	NT	NA	noncoding (26/98 nt)	RIP269 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP269 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site

Only 100 of 154 total aligned reads displayed.

AGAAAATTGAGGCGGGGGTGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTT  >  NC_000913/3740891‑3741088

  aaaaTTGAGGCGGGGGTGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTAc                                                                                                  <  2:2229013/100‑1 (MQ=255)

     aTTGAGGCGGGGGTGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATg                                                                                               >  1:722412/1‑100 (MQ=255)

     aTTGAGGCGGGGGTGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATg                                                                                               <  1:2472659/100‑1 (MQ=255)

          ggCGGGGGTGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTc                                                                                          <  1:422013/100‑1 (MQ=255)

          ggCGGGGGTGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTc                                                                                          >  1:554539/1‑100 (MQ=255)

          ggCGGGGGTGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTc                                                                                          <  1:1238086/100‑1 (MQ=255)

          ggCGGGGGTGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTc                                                                                          <  2:369759/100‑1 (MQ=255)

           gCGGGGGTGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACGAAAAATTTCCTGATGCGCTACGCTGATCAGGCCTACATGATTTCt                                                                                         >  1:2603960/1‑100 (MQ=255)

            cGGGGGTGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTg                                                                                        <  1:598930/100‑1 (MQ=255)

            cGGGGGGGAAGATTCTGGCGGAAGAGATACAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGTTGCGCTACGCTTATCAGGCCTACATGATTTCTg                                                                                        <  2:1564870/100‑1 (MQ=255)

             gggggTGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGc                                                                                       <  1:738219/100‑1 (MQ=255)

              ggggTGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCa                                                                                      <  2:550497/100‑1 (MQ=255)

               gggTGAAGATTATGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCAGTAAAAATTGCCTGATGAGCTACGCTTATCAGGCGTACATGAttt                                                                                           >  2:2562208/1‑94 (MQ=38)

                ggTGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAat                                                                                    >  2:1842727/1‑100 (MQ=255)

                ggTGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAat                                                                                    >  2:1842740/1‑100 (MQ=255)

                ggTGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAat                                                                                    <  1:1181533/100‑1 (MQ=255)

                 ctGAAGACTCAGACGGAAAGCATTGAAAGACCTTGGGCGGAAAGGCACTAAAAATTGCCTGTTGCGCTATGCTTATCAGGCCTACATGATTTCTGc                                                                                       <  2:714857/95‑1 (MQ=12)

                  tGAAGATTCTGGCGGAAGAGATAGAAAGCGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAatat                                                                                  <  1:363413/100‑1 (MQ=255)

                   gAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAatata                                                                                 >  2:1294042/1‑100 (MQ=255)

                   gAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAatata                                                                                 >  2:147993/1‑100 (MQ=255)

                    aaGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAatatat                                                                                >  1:1543309/1‑100 (MQ=255)

                          cTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAAtt                                                                          >  2:1255147/1‑100 (MQ=255)

                          cTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAAtt                                                                          >  2:2517615/1‑100 (MQ=255)

                           tGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAAtt                                                                          >  2:1757589/1‑99 (MQ=255)

                            ggCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTg                                                                        >  1:2283863/1‑100 (MQ=255)

                            ggCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTg                                                                        <  2:1304353/100‑1 (MQ=255)

                            ggCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTg                                                                        >  1:136973/1‑100 (MQ=255)

                            ggCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTg                                                                        >  1:1270505/1‑100 (MQ=255)

                             gCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTgg                                                                       >  1:307011/1‑100 (MQ=255)

                              cGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGga                                                                      >  1:957235/1‑100 (MQ=255)

                               ggAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATCTATTGAATTAgg                                                                       >  2:2163124/1‑98 (MQ=255)

                               ggAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGgaa                                                                     <  1:1881525/100‑1 (MQ=255)

                                gAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGgaag                                                                    <  2:2527344/100‑1 (MQ=255)

                                 aaGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGgaaga                                                                   >  1:2395845/1‑100 (MQ=255)

                                     gaTAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCCGGCCTACATGATTTCTGCAATCTCTTGAATTTGgcag                                                                    >  2:2111785/1‑95 (MQ=21)

                                     gaTAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAAttt                                                               >  1:1398036/1‑100 (MQ=255)

                                       tAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGt                                                             <  2:2227332/100‑1 (MQ=255)

                                       tAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGt                                                             <  2:957230/100‑1 (MQ=255)

                                        aGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTTAATTTGGAAGAATTTGTa                                                            >  2:1124883/1‑100 (MQ=255)

                                        aGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTa                                                            <  1:468529/100‑1 (MQ=255)

                                         gAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAg                                                           >  1:2558747/1‑100 (MQ=255)

                                          aaaGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAgg                                                          <  1:2353892/100‑1 (MQ=255)

                                          aaaGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATGTCTGCAATATATTGAATTTGGAATAATTTGTAgg                                                          >  2:1374271/1‑100 (MQ=255)

                                          aaaGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATATCTGCAATATATTGAATTTGGAAGAATTTGTAg                                                           >  2:1374260/1‑99 (MQ=255)

                                             gagCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCg                                                       >  2:774089/1‑100 (MQ=255)

                                             gagCATGGGCTGAAAGACACTAAAAATTGCCTGATGAGCGACGCTTATCAGGCCTACATGATATCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCg                                                       <  2:1131826/100‑1 (MQ=21)

                                              agCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCgg                                                      <  1:2401594/100‑1 (MQ=255)

                                               gCCTGGGCGGAAAGTCACGAAAGATTGGCTGATGCGCTACGCTTATCAGGCCTACATGATTGCTGCAATATATTGAAGTTGGAAGAATTTGTAGGCCgg                                                      <  2:2089091/99‑1 (MQ=21)

                                                 cTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATa                                                   <  1:1444023/100‑1 (MQ=255)

                                                 cTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATa                                                   <  1:1808987/100‑1 (MQ=255)

                                                  tGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATaa                                                  >  1:2577191/1‑100 (MQ=255)

                                                   gggCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAg                                                 <  2:497009/100‑1 (MQ=255)

                                                    ggCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATaacg                                                <  1:1757598/100‑3 (MQ=255)

                                                     gCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGc                                               <  1:1341019/100‑1 (MQ=255)

                                                     gCTGAAAATCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGc                                               >  1:1365883/1‑100 (MQ=255)

                                                      cTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCg                                              >  2:495863/1‑100 (MQ=255)

                                                        gAAAGTCACTAAAACTTGCCTGATGCGCTACGATTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGt                                             <  2:2311953/99‑1 (MQ=255)

                                                        gAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGtt                                            >  1:2592783/1‑100 (MQ=255)

                                                        gAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGt                                             >  1:1295128/1‑99 (MQ=255)

                                                         aaaGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGttt                                           <  1:1541951/100‑1 (MQ=255)

                                                          aaGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTa                                          <  2:1402342/100‑1 (MQ=255)

                                                           aGTAACTAAACATTGCCGGATGCGCTACGCTTATCAGGCATACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTAc                                         <  2:2584529/100‑1 (MQ=18)

                                                              cACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTAcgcc                                      >  2:23269/1‑100 (MQ=255)

                                                               aCTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTAcgccg                                     >  1:2094574/1‑100 (MQ=255)

                                                               aCTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTAcgccg                                     >  1:1040131/1‑100 (MQ=255)

                                                               aCTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTAcgcc                                      >  1:1332489/1‑99 (MQ=255)

                                                                cTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTAcgccgc                                    >  2:57436/1‑100 (MQ=255)

                                                                cTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTAcgccgc                                    >  2:1968482/1‑100 (MQ=255)

                                                                cTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATGTGGAAGAATTTGTAGGCCGGATAAGGCGTTTAcgccgc                                    >  2:1414680/1‑100 (MQ=255)

                                                                 tAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCa                                   <  2:1763895/100‑1 (MQ=255)

                                                                 tAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCa                                   >  1:1019772/1‑100 (MQ=255)

                                                                     aaTTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTg                               <  2:790582/100‑1 (MQ=255)

                                                                     aaTTGCCTGATGCGCTACGCTTATCAGGCCGACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTg                               <  2:1793648/100‑1 (MQ=255)

                                                                      aTTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTgg                              <  1:2199411/100‑1 (MQ=255)

                                                                      aTTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTGGTAGGCCGGATAAGGCGTTTACGCCGCATCTgg                              <  2:1565665/100‑1 (MQ=255)

                                                                       ttGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGc                             <  1:1873334/100‑1 (MQ=255)

                                                                       aggcctgataagcgtagcgcatcaggcCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGACGGATAAGGCGTTTACGCCGCATCTgg                              >  2:1044094‑M2/28‑99 (MQ=255)

                                                                        tGCCTGATGCGCTACGCTTATCAGGCCTACATGTTTTCTGCATTATATTGAATTTGGAAGAATTTGTAGGCCAGATGCGGCGTAAACGCCTTATCCGGcc                            <  2:1831447/100‑2 (MQ=14)

                                                                        ggcctgataagagtagcgcatcaggcCTAAATGATTTCTGCAATATATTGAATTTGGAACACTTTGTAGGCAGGATAAGGCGTTTACGCCGCATCTGGc                             >  2:247284‑M2/27‑99 (MQ=255)

                                                                         gcctgataagcgtagcgcatcaggcCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCAt                           >  2:238228‑M2/26‑100 (MQ=255)

                                                                          cctgataagcgtagcgcatcaggcCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATa                          >  1:106488‑M2/25‑100 (MQ=255)

                                                                          cctgataagcgtagcgcatcaggcCTACATGATTTCCGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATa                          >  2:1252429‑M2/25‑100 (MQ=255)

                                                                             gATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAAc                       <  2:370105/100‑1 (MQ=255)

                                                                              aTGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACa                      <  1:57436/100‑1 (MQ=255)

                                                                                gcgcTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACaaa                    <  1:1294726/100‑1 (MQ=255)

                                                                                cggcTACGATTAGCAGGTCTACAGGAGTTCTGCAATTTTTGGAATTGGGAACAATTTGTAGGCCGGACAACGGGTGTACGCCGCATCTGGCATa                          <  2:848339/92‑1 (MQ=12)

                                                                                 cgcTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAg                   >  2:1546170/1‑100 (MQ=255)

                                                                                 agcTACTCTTATCAGGCCTACATGATTTATGCAATATATTGAAATTGGAAGATTTTGTAGGCCGGATAAGGCGTTTAAGCCGCATTTGGCATAAACAAAg                   >  2:248041/2‑100 (MQ=17)

                                                                                  gcTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAgc                  <  1:698494/100‑1 (MQ=255)

                                                                                   cTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAgcg                 >  1:338290/1‑100 (MQ=255)

                                                                                    tACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAgcgc                >  1:2491590/1‑100 (MQ=255)

                                                                                     aCGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCa               >  2:1440422/1‑100 (MQ=255)

                                                                                      cGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCAc              >  1:993776/1‑100 (MQ=255)

                                                                                       gCTTATCATGCCTACATGATTTCTTCAATATATTGAATTTTGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACCAAgcgc                <  2:323408/97‑1 (MQ=17)

                                                                                          tATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGtt          >  2:2430316/1‑100 (MQ=255)

                                                                                           atcaggcCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTc         >  1:2536667‑M2/8‑100 (MQ=255)

                                                                                            tcaggcCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTcc        <  1:2140590‑M2/94‑1 (MQ=255)

                                                                                               ggcCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGc     >  1:1420597‑M2/4‑100 (MQ=255)

                                                                                                gcCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCg    >  2:1892261‑M2/3‑100 (MQ=255)

                                                                                                  cTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGtt  >  1:490404/1‑100 (MQ=255)

AGAAAATTGAGGCGGGGGTGAAGATTCTGGCGGAAGAGATAGAAAGAGCCTGGGCTGAAAGTCACTAAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATGATTTCTGCAATATATTGAATTTGGAAGAATTTGTAGGCCGGATAAGGCGTTTACGCCGCATCTGGCATAAACAAAGCGCACTGTTCCGGCGTT  >  NC_000913/3740891‑3741088

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.