Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 4,573,528 A→G 100% pseudogene (1115/1503 nt) yjiT → pseudogene

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,573,5280AG100.0% 363.7 / ‑6.7 103pseudogene (1115/1503 nt)yjiTpseudogene
Reads supporting (aligned to +/- strand):  ref base A (0/0);  major base G (39/63);  minor base T (0/1);  total (39/64)

Only 100 of 105 total aligned reads displayed.

AGCGAAGTGAGATTTGGCAGGCAAAATCCATCGGCAGGTTTGTCGTTAGTGGCTCGTGCTGGAGGGATGATTGTTGGGAGCATTAAACTTGATGACAGTGAAATTGCCATTGGTGAGGTGCCGTTAACCTTCATCGTTGATGCAGATCAATGGCTGTTACAGGGACAGGCTTCTTGCAGTGTGCGAAGCA  >  NC_000913/4573434‑4573623
                                                                                              |                                                                                               
aGCGAAGTGAGATTTGGCAGGCAAAATCCATCGGCAGGTTTGTCGTTAGTGGCTCGTGCTGGAGGGATGATTGTTGGGAGCATTAAACTTGATGGCAGTg                                                                                            <  2:63747/100‑1 (MQ=255)
aGCGAAGTGAGATTTGGCAGGCAAAATCCATCGGCAGGTTTGTCGTTAGTGGCTCGTGCTGGAGGGATGATTGTTGGGAGCATTAAACTTGATGGCAGTg                                                                                            >  2:1793791/1‑100 (MQ=255)
   gAAGTGAGATTTGGCAGGCAAAATCCATCGGCAGGTTTGTCGTTAGTGGCTCGTGCTGGAGGGATGATTGTTGGGAGCATTAAACTTGATGGCAGTGaaa                                                                                         >  2:2474010/1‑100 (MQ=255)
     aGTGAGATTTGGCAGGCAAAATCCATCGGCAGGTTTGTCGTTAGTGGCTCGTGCTGGAGGGATGATTGTTGGGAGCATTAAACTTGATGGCAGTGAAAtt                                                                                       <  1:390352/100‑1 (MQ=255)
     aGTGAGATTTGGCAGGCAAAATCCATCGGCAGGGTTGTCGTTAGTGGCTCGTGCTGGAGGGATGATTGTTGGGAGGATTAAACTTGATGGCAGTGAAAtt                                                                                       >  2:2562436/1‑100 (MQ=255)
     aGTGAGATTTAGCAGGCAAAATCCATCGGCAGGTTTGTCGTTAGTGGCTCGTGCTGGAGGGATGATTGTTGGGAGCATTAAACTTGATGGCAGTGAAAtt                                                                                       <  2:1703727/100‑1 (MQ=255)
      gTGAGATTTGGCAGGCAAAATCCATCGGCAGGTTTGTCGTTAGTGGCTCGTGCTGGAGGGATGATTGTTGGGAGCATTAAACTTGATGGCAGTGAAATTg                                                                                      >  1:838113/1‑100 (MQ=255)
      gTGAGATTTGGCAGGCAAAATCCATCGGCAGGTTTGTCGTTAGTGGCTCGTGCTGGAGGGATGATTGTTGGGAGCATTAAACTTGATGGCAGTGAAATTg                                                                                      <  1:145132/100‑1 (MQ=255)
        gagaTTTGGCAGGCAAAATCCATCGGCAGGTTTGTCGTTAGTGGCTCGTGCTGGAGGGATGATTGTTGGGAGCATTAAACTTGATGGCAGTGAAATTGcc                                                                                    <  2:1406573/100‑1 (MQ=255)
         agaTTTGGCAGGCAAAATCCATCGGCAGGTTTGTCGTTAGTGGCTCGTGCTGGAGGGATGATTGTTGGGAGCATTAAACTTGATGGCAGTGAAATTGCCa                                                                                   <  1:1392087/100‑1 (MQ=255)
         agaTTTGGCAGGCAAAATCCATCGGCAGGTTTGTCGTTAGTGGCTCGTGCTGGAGGGATGATTGTTGGGAGCATTAAACTTGATGGCAGTGAAATTGCCa                                                                                   <  1:1851334/100‑1 (MQ=255)
             ttGGCAGGCAAAATCCATCGGCAGGTTTGTCGTTAGTGGCTCGTGCTGGAGGGATGATTGTTGGGAGCATTAAACTTGATGGCAGTGAAATTGCCATTgg                                                                               <  1:2502228/100‑1 (MQ=255)
             ttGGCAGGCAAAATCCATCGGCAGGTTTGTCGTTAGTGGCTCGTGCTGGAGGGATGATTGTTGGGAGCATTAAACTTGATGGCAGTGAAATTGCCATTgg                                                                               <  1:1456491/100‑1 (MQ=255)
              tGGCAGGCAAAATCCATCGGCAGGTTTGTCGTTAGTGGCTCGTGCTGGAGGGATGATTGTTGGGAGCATTAAACTTGATGGCAGTGAAATTGCCATTg                                                                                <  1:118064/98‑1 (MQ=255)
               ggcaggcaAAATCCATCGGCAGGTTTGTCGTTAGTGGCTCGTGCTGGAGGGATGATTGTTGGGAGCATTAAACTTGATGGCAGTGAAATTGCCATTGGTg                                                                             <  1:1964415/100‑1 (MQ=255)
               ggcaggcaAAATCCATCGGCAGGTTTGTCGTTAGTGGCTCGTGCTGGAGGGATGATTGTTGGGAGCATTAAACTTGATGGCAGTGAAATTGCCATTGGTg                                                                             >  1:1883660/1‑100 (MQ=255)
               ggcaggcaAAATCCATCGGCAGGTTTGTCGTTAGTGGCTCGTGCTGGAGGGATGATTGTTGGGAGCATTAAACTTGATGGCAGTGAAATTGCCATTGGTg                                                                             <  1:1306664/100‑1 (MQ=255)
                gcaggcaAAGTCCAGCGGCAGGTTTGTCGTTAGTGGCTCGTGCTGGAGGGATGATTGTTGGGAGCATTAAACTTGCTGGCAGTGAAATTGCCATTGGTGa                                                                            <  2:2181471/100‑1 (MQ=255)
                 caggcaAAATCCATCGGCAGGTTTGTCGTTAGTGGCTCGTGCTGGAGGGATGATTGTTGGGAGCATTAAACTTGATGGCAGTGAAATTGCCATTGGTGAg                                                                           <  2:237191/100‑1 (MQ=255)
                 caggcaAAATCCATCGGCAGGTTTGTCGTTAGTGGCTCGTGCTGGAGGGATGATTGTTGGGAGCATTAAACTTGATGGCAGTGAAATTGCCATTGGTGAg                                                                           <  2:916583/100‑1 (MQ=255)
                 caggcaAAATCCATCGGCAGGTTTGTCGTTAGTGGCTCGTGCTGGAGGGATGATTGTTGGGAGCATTAAACTTGATGGCAGTGAAATTGCCATTGGTGAg                                                                           <  1:1912924/100‑1 (MQ=255)
                  aggcaAAATCCATCGGCAGGTTTGTCGTTAGTGGCTCGTGCTGGAGGGATGATTGTTGGGAGCCTTAAACTTGATGGCAGTGAAATTGCCATTGGTGAgg                                                                          <  1:1839419/100‑1 (MQ=255)
                   ggcaAAATCCATCGGCAGGTTTGTCGTTAGTGGCTCGTGCTGGAGGGATGATTGTTGGGAGCATTAAACTTGATGGCAGTGAAATTGCCATTGGTGAGGt                                                                         >  1:1136717/1‑100 (MQ=255)
                   ggcaAAATCCATCGGCAGGTTTGTCGTTAGTGGCTCGTGCTGGAGGGATGATTGTTGGGAGCATTAAACTTGATGGCAGTGAAATTGCCATTGGTGAGGt                                                                         >  1:828230/1‑100 (MQ=255)
                   ggcaAAATCCATCGGCAGGTTTGTCGTTAGTGGCTCGAGCTGGAGGGATGATAGTTGGGAGCAGTAAACTTGATGGCAGTGGAATTGCCATTGGTGaag                                                                          >  2:1652271/1‑97 (MQ=255)
                   ggcaAAATCCATCGGCAGGTTTGTCGTGAGTGGCTCGTGCTGGAGGGATGATTGTTGGGAGCATTAAACTTGATGGCAGTGAAATTGCCATTGGTGAGGt                                                                         >  2:521593/1‑100 (MQ=255)
                    gcaAAATCCATCGGCAGGTTTGTCGTTAGTGGCTCGTGCTGAAGGGATGATTGTTGGGAGCATTAAACTTGATGGCAGTGAAATTGCCATTGGTGAGGTg                                                                        >  2:302850/1‑100 (MQ=255)
                      aaaaTCCATCGGCAGGTTTGTCGTTAGTGGCTCGTGCTGGAGGGATGATTGTTGGGAGCATTAAACTTGATGGCAGTGAAATTGCCATTGGTGAGGTGcc                                                                      >  1:940647/1‑100 (MQ=255)
                          tCCATCGGCAGGTTTGTCGTTAGTGGCTCGTGCTGGAGGGATGATTGTTGGGAGCATTAAACTTGATGGCAGTGAAATTGCCATTGGTGAGGTGCCGTTa                                                                  <  1:91493/100‑1 (MQ=255)
                          tCCATCGGCAGGTTTGTCGTTAGTGGCTCGTGCTGGAGGGATGATTGTTGGGAGCATTAAACTTGATGGCAGTGAAATTGCCATTGGTGAGGTGCCGTTa                                                                  >  2:512685/1‑100 (MQ=255)
                            cATCGGCAGGTTTGTCGTTAGTGGCTCGTGCTGGAGGGATGATTGTTGGGAGCATTAAACTTGATGGCAGTGAAATTGCCATTGGTGAGGTGCCGTTAAc                                                                <  1:2360425/100‑1 (MQ=255)
                            cATCGGCAGGTTTGTCGTTAGTGGCTCGTGCTGGAGGGATGATTGTTGGGAGCATTAAACTTGATGGCAGTGAAATTGCCATTGGTGAGGTGCCGTTAAc                                                                <  2:1843618/100‑1 (MQ=255)
                              tCGGCAGGTTTGTCGTTAGTGGCTCGTGCTGGAGGGATGATTGTTGGGAGCATTAAACTTGATGGCAGTGAAATTGCCATTGGTGAGGTGCCGTTAACCt                                                              <  1:2406659/100‑1 (MQ=255)
                                ggCAGGTTTGTCGTTAGTGGCTCGTGCTGGAGGGATGATTGTTGGGAGCATTAAACTTGATGGCAGTGAAATTTCCATTGGTGAGGTGCCGTTAACCTTc                                                            >  2:351896/1‑100 (MQ=255)
                                ggCAGGTTTGTCGTTAGTGGCTCGTGCTGGAGGGATGATTGTTGGGAGCATTAAACTTGATGGCAGTGAAATTGCCATTGGTGAGGTGCCGTTAACCTTc                                                            >  1:741820/1‑100 (MQ=255)
                                 gCAGGTTTGTCGTTAGTGGCTCGTGCTGGAGGGATGATTGTTGGGAGCATTAAACTTGATGGCAGTGAAATTGCCATTGGTGAGGTGCCGTTAACCTTCa                                                           <  1:190150/100‑1 (MQ=255)
                                  cAGGTTTGTCGTTAGTGGCTCGTGCTGGAGGGATGATTGTTGGGAGCATTAAACTTGATGGCAGTGAATTTGCCATTGGTGAGGTGTCGTTAACCTTctt                                                          <  1:1757635/100‑3 (MQ=255)
                                  cAGGTTTGTCGTTAGTGGCTCGTGCTGGAGGGATGATTGTTGGGAGCATTAAACTTGATGGCAGTGAAATTGCCATTGGTGAGGTGCCGTTAACCTTCAt                                                          >  1:1852648/1‑100 (MQ=255)
                                    ggTTTGTCGTTAGTGGCTCGTGCTGGAGGGATGATTGTTGGGAGCATTAAACTTGATGGCAGTGAAATTGCCATTGGTGAGGTGCCGTTAACCTTCATCg                                                        >  1:1277369/1‑100 (MQ=255)
                                     gTTTGTCGTTAGTGGCTCGTGCTGGAGGGATGATTGTTGGGAGCATTAAACTTGATGGCAGTGAAATTGCCATTGGTGAGGTGCCGTTAACCTTCATCGt                                                       <  2:530791/100‑1 (MQ=255)
                                       ttGTCGTTAGTGGCTCGTGCTGGAGGGATGATTGTTGGGAGCATTAAACTTGATGGCAGTGAAATTGCCATTGGTGAGGTGCCGTTAACCTTCATCGTTg                                                     <  1:719194/100‑1 (MQ=255)
                                         gTCGTTAGTGGCTCGTGCTGGAGGGATGATTGTTGGGAGCATTAAACTTGATGGCAGTGAAATTGCCATTGGTGAGGTGCCGTTAACCTTCATCGTTGAt                                                   <  1:2475754/100‑1 (MQ=255)
                                         gTCGTTAGTGGCTCGTGCTGGAGGGATGATTGTTGGGAGCATTAAACTTGATGGCAGTGAAATTGCCATTGGTGAGGTGCCGTTAACCTTCATCGTTGAt                                                   <  2:211664/100‑1 (MQ=255)
                                         gTCGTTAGTGGCTCGTGCTGGAGGGATGATTGTTGGGAGCATTAAACTTGATGGCAGGGAAATTGCCATTGGTGAGGTGCCGTTAACCTTCATCGTTGAt                                                   <  1:1363956/100‑1 (MQ=255)
                                           cGTTAGTGGCTCGTGCTGGAGGGATGATTGTTGGGAGCATTAAACTTGATGGCAGTGAAATTGCCATTGGTGAGGTGCAGTTAACCTTCGTCGTTGATGc                                                 >  2:230138/1‑100 (MQ=255)
                                            gTTAGTGGCTCGTGCTGGAGGGATGATTGTTGGGAGCATTAAACTTGATGGCAGTGAAATTGCCATTGGTGAGGTGCCGTTAACCTTCATCGTTGATg                                                  >  1:1782809/1‑98 (MQ=255)
                                             ttAGTGGCTCTTGCTGGAGGGATGATTGTTGTCAGGATTAAACTTGATGTCAGTTAAATTGCCATTGGTGAGGGGCCTTTAACCTTCATCGTTGATGCa                                                <  2:896820/99‑1 (MQ=255)
                                              tAGTGGCTCGTGCTGGAGGGATGATTGTTGGGAGCATTAAACTTGATGGCAGTGAAATTGCCATTGGTGAGGTGCCGTTAACCTTCATCGTTGATGCAGa                                              <  1:1007150/100‑1 (MQ=255)
                                               aGTGGCTCGTGCTGGAGGGATGATTGTTGGGAGCATTAAACTTGATGGCAGTGAAATTGCCATTGGTGAGGTGCCGTTAACCTTCATCGTTGATGCAGa                                              >  2:821888/1‑99 (MQ=255)
                                               aGTGGCTCGTGCTGGAGGGATGATTGTTGGGAGCATTAAACTTGATGGCAGTGAAATTGCCATTGGTGAGGTGCCGTTAACCTTCATCGTTGATGCAGAt                                             <  2:1524241/100‑1 (MQ=255)
                                                 tGGCTCGTGCTGGAGGGATGATTGTTGGGAGCATTAAACTTGATGGCAGTGAAATTGCCATTGGTGAGGTGCCGTTAACCTTCATCGTTGATGCAGATCa                                           <  1:2590955/100‑1 (MQ=255)
                                                   gCTCGTGCTGGTGGGATGAATGTTGGGAGTATTAAACTTGATGGCAGGGAAATTGCTATTGGTGAGGTGTCGTTAACCTTTATCGTTGATGCAGATCAAt                                         >  2:1612772/1‑100 (MQ=255)
                                                    cTCGTTCTGGAGGGATGATTGTTGGGAGCATTAAACTTGATGGCAGTGAAATTGCCATTGGTGAGGTGCCGTTAACCTTCATCGTGGATGCAGATCAATg                                        <  2:1808038/100‑1 (MQ=255)
                                                    cTCGTGCTGGAGGGATGATTGTTGGGAGCATTAAACTTGATGGCAGTGAAATTGCCATTGGTGAGGTGCCGTTAACCTTCATCGTTGATGCAGATCAATg                                        <  2:1847608/100‑1 (MQ=255)
                                                    cTCGTGCTGGAGGGATGATTGTTGGGAGCATTAAACTTGATGGCAGTGAAATTGCCATTGGTGAGGTGCCGTTAACCTTCATCGTTGATGCAGATCAATg                                        <  1:2420479/100‑1 (MQ=255)
                                                      cgcgCTGGAGGGAGGATTGGTGGGGGCTTTAAACTTGATGGCAGTGAAATTGCCATTGGTGAGGGGCCGTTAACCTTCATCGTTGATGCATATCAATGGc                                      <  2:655484/97‑1 (MQ=255)
                                                      cGTGCTGGAGGGATGATTGTTGGGAGCATTAAACTTGATGGCAGTGAAATTGCCATTGGTGAGGTGCCGTTAACCTTCATCGTTGATGCAGATCAATGGc                                      >  2:2192249/1‑100 (MQ=255)
                                                      cGTGCTGGAGGGATGATTGTTGGGAGCATTAAACTTGATGGCAGTGAAATTGCCATTGGTGAGGTGCCGTTAACCTTCATCGTTGATGCAGATCAATGGc                                      <  1:2273362/100‑1 (MQ=255)
                                                        tGCTGGAGGGATGATTGTTGGGAGCATTAAACTTGATGGCAGTGAAATTGCCATTGGTGAGGTGCCGTTAACCTTCATCGTTGATGCAGATCAATGGCTg                                    >  1:587100/1‑100 (MQ=255)
                                                        tGCTGGAGGGATGATTGTTGGGAGCATTAAACTTGATGGCAGTGAAATTGCCATTGGTGAGGTGCCGTTAACCTTCATCGTTGATGCAGATCAATGGCTg                                    <  2:53562/100‑1 (MQ=255)
                                                        tGCTGGAGGGATGATTGTTGGGAGCATTAAACTTGATGGCAGTGAAATTGCCATTGGTGAGGTGCCGTTAACCTTCATCGTTGATGCAGATCAATGGCTg                                    <  2:835271/100‑1 (MQ=255)
                                                         gCTGGAGGGATGATTGTTGGGAGCATTAAACTTGATGGCAGTGAAATTGCCATTGGTGAGGTGCCGTTAACCTTCATCGTTGATGCAGATCAATGGCTGt                                   <  1:2146559/100‑1 (MQ=255)
                                                           tGGCGGGATGATTGTTGGGAGCATTAAACTTGATGGCAGTGAAATTGCCATTGGTGAGGTGCCGTTAACCTTCATCGTTGATGCAGATCAATGGCTGTTa                                 >  1:1019759/1‑100 (MQ=255)
                                                           tGGAGGGATGATTGTTGGGAGCATTAAACTTGATGGCAGTGAAATTGCCATTGGTGAGGTGCCGTTAACCTTCATCGTTGATGCAGATCAATGGCTGTTa                                 >  2:163622/1‑100 (MQ=255)
                                                           tGGAGGGATGATTGTTGGGAGCATTAAACTTGATGGCAGTGAAATTGCCATTGGTGAGGTGCCGTTAACCTTCATCGTTGATGCAGATCAATGGCTGTTa                                 <  2:1489419/100‑1 (MQ=255)
                                                           tGGAGGGATGATTGTTGGGAGCATTAAACTTGATGGCAGTGAAATTGCCATTGGTGAGGTGCCGTTAACCTTCATCGTTGATGCAGATCAATGGCTGTTa                                 >  1:1214354/1‑100 (MQ=255)
                                                            ggAGGGATGATTGTTGGGAGCATTAAACTTGATGGCAGTGAAATTGCCATTGGTGAGGTGCCGTTAACCTTCATCGTTGATGCAGATCAATGGCTGTTAc                                >  2:799320/1‑100 (MQ=255)
                                                              aGGGATGATTGTTGGGAGCATTAAACTTGATGGCAGTGAAATTGCCATTGGTGAGGTGCCGTTAACCTTCATCGTTGATGCAGATCAATGGCTGTTACAg                              <  1:641791/100‑1 (MQ=255)
                                                               gggATGATTGTTGGGAGCATTAAACTTGATGGCAGTGAAATTGCCATTGGTGAGGTGCCGTTAACCTTCATCGTTGATGCAGATCAATGGCTGTTACAgg                             <  2:414517/100‑1 (MQ=255)
                                                                 natgatTGTTGGGAGCATTAAACTTGATGGCAGTGAAATTGCCATTGGTGAGGTGCCGTTAACCTTCATCGTTGATGCAGATCAATGGCTGTTACAGGGa                           >  2:167157/2‑100 (MQ=255)
                                                                 gatgatTGTTGGGAGCATTAAACTTGATGGCAGTGAAATTGCCATTGGTGAGGTGCCGTTAACCTTCATCGTTGATGCAGATCAATGGCTGTTACAGGGa                           >  1:1266240/1‑100 (MQ=255)
                                                                 gatgatTGTTGGGAGCATTAAACTTGATGGCAGTGAAATTGCCATTGGTGAGGTGCCGTTAACCTTCATCGTTGATGCAGATCAATGGCTGTTACAGGGa                           >  1:2310489/1‑100 (MQ=255)
                                                                 gatgatTGTTGGGAGCATTAAACTTGATGGCAGTGAAATTGCCATTGGTGAGGTGCCGTTAACCTTCATCGTTGATGCAGATCAATGGCTGTTACAGGGa                           >  1:807607/1‑100 (MQ=255)
                                                                 gatgatTGTTGGGAGCATTAAACTTGATGGCAGTGAAATTGCCATTGGTGAGGTGCCGTTAACCTTCATCGTTGATGCAGATCAATGGCTGTTACAGGGa                           >  2:532054/1‑100 (MQ=255)
                                                                   tgatTGTTGGGAGCATTAAACTTGATGGCAGTGAAATTGCCATTGGTGAGGTGCCGTTAACCTTCATCGTTGATGCAGATCAATGGCTGTTACAGGGACa                         >  2:340136/1‑100 (MQ=255)
                                                                    ggttgttgGGAGCATTAAACGTGATGGCGGGGAGATTGCTAGTGGTGAGGTGCTGTTAACCTTCATTGTTGGTGCAGATCAATGGGTGTTACAGGGACAg                        <  2:1458299/98‑1 (MQ=255)
                                                                     atTGTTGGGAGCATTAAACTTGATGGCAGTGAAATTGCCATTGGTGAGGTGCCGTTAACCTTCATCGTTGATGCAGATCAATGGCTGTTACAGGGACAgg                       <  1:875816/100‑1 (MQ=255)
                                                                      ttgttgGGAGCATTAAACTTGATGGCAGTGAAATTGCCATTGGTGAGGTGCCGTTAACCTTCATCGTTGATGCAGATCAATGGCTGTTACAGGGACAGGc                      <  1:2052426/100‑1 (MQ=255)
                                                                      ttgttgGGAGCATTAAACTTGATGGCAGTGAAATTGCCATTGGTGAGGTGCCGTTAACCTTCATCGTTGATGCAGATCAATGGCTGTTACAGGGACAGGc                      <  1:4085/100‑1 (MQ=255)
                                                                      ttgttgGGAGCATTAAACTTGATGGCAGTGAAATTGCCATTGGTGAGGTGCCGTTAACCTTCATCGTTGATGCAGATCAATGGCTGTTACAGGGACAGGc                      <  2:2139359/100‑1 (MQ=255)
                                                                       tgttgGGAGCATTAAACTTGATGGCAGTGAAATTGCCATTGGTGAGGTGCCGTTAACCTTCATCGTTGATGCAGATCAATGGCTGTTACAGGGACAGGct                     >  1:2215597/1‑100 (MQ=255)
                                                                         ttgGGAGCATTAAACTTGATGGCAGTGAAATTGCCATTGGTGAGGTGCCGTTAACCTTCATCGTTGATGCAGATCAATGGCTGTTACAGGGACAGGcttc                   <  1:532058/100‑1 (MQ=255)
                                                                         ttgGGAGCATTAAACTTGATGGCAGTGAAATTGCCATTGGTGAGGTGCCGTTAACCTTCATCGTTGATGCAGATCAATGGCTGTTACAGGGACAGGcttc                   <  1:799325/100‑1 (MQ=255)
                                                                          tgGGAGCATTAAACTTGATGGCAGTGAAATTGCCATTGGTGAGGTGCCGTTAACCTTCATCGTTGATGCAGATCAATGGCTGTTACAGGGACAGGcttct                  >  1:1940015/1‑100 (MQ=255)
                                                                            ggAGCATTAAACTTGATGGCAGTGAAATTGCCATTGGTGAGGTGCCGTTAACCTTCATCGTTGATGCAGATCAATGGCTGTTACAGGGACAGGCTTCTTg                <  1:1383480/100‑1 (MQ=255)
                                                                            ggAGCATTAAACTTGATGGCAGTGAAATTGCCATTGGTGAGGTGCCGTTAACCTTCATCGTTGATGCAGATCAATGGCTGTTACAGGGACAGGCTTCTTg                <  1:1091237/100‑1 (MQ=255)
                                                                            ggAGCATTAAACTTGATGGCAGTGAAATTGCCATTGGTGAGGTGCCGTTAACCTTCATCGTTGATGCAGATCAATGGCTGTTACAGGGACAGGCTTCTTg                >  1:2332581/1‑100 (MQ=255)
                                                                             gAGCATTAAACTTGATGGCAGTGAAATTGCCATTGGTGAGGTGCCGTTAACCTTCATCGTTGATGCAGATCAATGGCTGTTACAGGGACAGGCTTCTTGc               <  1:420986/100‑1 (MQ=255)
                                                                             gAGCATTAAACTTGATGGCAGTGAAATTGCCATTGGTGAGGTGCCGTTAACCTTCATCGTTGATGCAGATCAATGGCTGTTACAGGGACAGGCTTCTTGc               <  1:538312/100‑1 (MQ=255)
                                                                              aGCATTAAACTTGATGGCAGTGAAATTGCCATTGGTGAGGTGCCGTTAACCTTCATCGTTGATGCAGATCAATGGCTGTTACAGGGACAGGCTTCTTGCa              <  2:741815/100‑1 (MQ=255)
                                                                              aGCATTAAACTTGATGGCAGTGAAATTGCCATTGGTGAGGTGCCGTTAACCTTCATCGTTGATGCAGATCAATGGCTGTTACAGGGACAGGCTTCTTGCa              <  2:838108/100‑1 (MQ=255)
                                                                               gCATTAAACTTGATGGCAGTGAAATTGCCATTGGTGAGGTGCCGTTAACCTTCATCGTTGATGCAGATCAATGGCTGTTACAGGGACAGGCTTCTTGCAg             <  1:240092/100‑1 (MQ=255)
                                                                                    aaaCTTGATGGCAGTGAAATTGCCATTGGTGAGGTGCCGTTAACCTTCATCGTTGATGCAGATCAATGGCTGTTACAGGGACAGGCTTCTTGCAGtgtg         >  2:1184491/1‑99 (MQ=255)
                                                                                    aaaCTTGATGGCAGTGAAATTGCCATTGGTGAGGTGCCGTTAACCTTCATCGTTGATGCAGATCAATGGCTGTTACAGGGACAGGCTTCTTGCAGTGTGc        <  2:2425902/100‑1 (MQ=255)
                                                                                     atcTTGATGGCAGTGAAATTGCCATTGGTGAGGTGCCGTTAACCTTCATCGTTGATGCGGATCAATGGCTGTTACAGGGACAGGCTTCTTGCAGTGTGc        <  2:1275613/97‑1 (MQ=255)
                                                                                     atcTTGATGGCAGTGAAATTGCCATTGGTGAGGTGCCGTTAACCTTCATCGTTGATGCAGATCAATGGCTGTTACAGGGACAGGCTTCTTGCAGTGTGCg       <  1:2444469/98‑1 (MQ=255)
                                                                                     aaCTTGATGGCAGTGTAATTGCCATTGGTGAGGTGCCGTTAACCTTCATCGTTGATGCAGATCAATGGCTGTTACAGGGACAGGCTTCTTGCAGTGTGCg       <  1:2567236/100‑1 (MQ=255)
                                                                                     aaCTTGATGGCAGTGAAATTGCCATTGGTGAGGTGCCGTTAACCTTCATCGTTGATGCAGATCAATGGCTGTTACAGGGACAGGCTTCTTGCAGTGTGCg       <  2:1214349/100‑1 (MQ=255)
                                                                                      aCTTGATGGCAGTGAAATTGCCATTGGTGAGGTGCCGTTAACCTTCATCGTTGATGCAGATCAATGGCTGTTACAGGGACAGGCTTCTTGCAGTGTGCGa      <  1:1717283/100‑1 (MQ=255)
                                                                                          gatggCAGTGAAATTGCCATTGGTGAGGTGCCGTTAACCTTCATCGTTGATGCAGATCAATGGCTGTTACAGGGACAGGCTTCTTGCAGTGTGCGAagca  <  1:565133/100‑1 (MQ=255)
                                                                                              |                                                                                               
AGCGAAGTGAGATTTGGCAGGCAAAATCCATCGGCAGGTTTGTCGTTAGTGGCTCGTGCTGGAGGGATGATTGTTGGGAGCATTAAACTTGATGACAGTGAAATTGCCATTGGTGAGGTGCCGTTAACCTTCATCGTTGATGCAGATCAATGGCTGTTACAGGGACAGGCTTCTTGCAGTGTGCGAAGCA  >  NC_000913/4573434‑4573623

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑