| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,594,256 | (C)8→7 | pseudogene (3732/3861 nt) | yneO ← | pseudogene, AidA homolog |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,594,249 | 0 | C | . | 98.3% | 268.7 / ‑2.6 | 61 | pseudogene (3739/3861 nt) | yneO | pseudogene, AidA homolog |
| Reads supporting (aligned to +/- strand): ref base C (0/1); major base . (30/29); minor base A (0/1); total (30/31) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
CACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTTCCCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTA > NC_000913/1594150‑1594340 | cACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTTc > 2:1395084/1‑100 (MQ=255)cACCTGCACTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTCATGTGTTGACTTGCCACATTAATGGCAGAGTCGGAACCGAAAGCAATTTc > 1:32944/1‑100 (MQ=255) naGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTTccccccc > 1:180026/2‑100 (MQ=255) gtggtgACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTACTGGCAGAGTCGGAACCGAAAGCAATTTcccccccac > 2:1274412/1‑98 (MQ=255) gtggtgACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTTcccccccac > 2:1349930/1‑98 (MQ=255) tggtgACATTTCCCGACATCACACCGCTGTTATTGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTTcccccccacg < 2:1443796/100‑4 (MQ=255) ggtgACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTTcccccccacga > 2:1684442/1‑96 (MQ=255) cATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATcc > 2:1534574/1‑100 (MQ=255) tttCCCGATATCATACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCcg < 2:586886/99‑1 (MQ=255) tttCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCcgt > 1:22045/1‑100 (MQ=255) ttCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCcgtc < 2:233325/100‑1 (MQ=255) tCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCcgtcg > 1:1563325/1‑100 (MQ=255) cccGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCcgtcgt > 2:812344/1‑100 (MQ=255) aCATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTAccc < 2:498748/100‑1 (MQ=255) aCATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTAccc < 1:501302/100‑1 (MQ=255) cATCACACCGCTGTTCTGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTAccc < 1:1062915/99‑1 (MQ=255) aTCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTg < 2:252782/100‑1 (MQ=255) acacCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATa < 1:921183/100‑1 (MQ=255) acacCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATa > 1:1503980/1‑100 (MQ=255) cacCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATAc > 2:593147/1‑100 (MQ=255) tGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCcgcg < 2:1041076/100‑1 (MQ=255) ttATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTTCCCCCCCCACGATATCCGTCGTACCCTGATACGCCGCgg < 2:1452214/100‑1 (MQ=255) aTGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGaa > 2:995798/1‑99 (MQ=255) atatTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCgtt > 2:1118055/1‑100 (MQ=255) atatTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCgtt < 1:633031/100‑1 (MQ=255) tatTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCgttg > 2:1491734/1‑100 (MQ=255) tatTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCgttg > 1:1599123/1‑100 (MQ=255) tatTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCgttg > 2:1351141/1‑100 (MQ=255) ttAATGTGTTGACTTGTCGTATTAATGGCAGAGTCGGAATCGAAAGCAATTT‑CCCCCCCACGCTATCCGGCGTACCCTGATACGCCGCGGAATCgttgtt < 2:630740/100‑1 (MQ=255) ttAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGTAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCgttgtt < 2:463826/100‑1 (MQ=255) tAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTa > 1:1023530/1‑100 (MQ=255) aaTGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTa > 2:1786073/1‑99 (MQ=255) gtgtTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAagag > 2:928025/1‑100 (MQ=255) tgtTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAagag < 2:1721427/99‑1 (MQ=255) gtTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTc > 1:1044822/1‑100 (MQ=255) gtTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAACCGTTGTTAAGAGTc > 1:832114/1‑100 (MQ=255) gACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAgg > 1:571808/1‑100 (MQ=255) gACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAgg > 1:1049012/1‑100 (MQ=255) cATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGGCGCGGAATCGTTGTTAAGAGTCAGGATCCCgg > 1:1378262/1‑100 (MQ=255) cATATTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGCATCGTCGCTACGAGCCAGAATCCCgg > 2:1541910/1‑100 (MQ=255) tatTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCTCGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTa < 2:222715/100‑1 (MQ=255) atTAATGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTAc < 2:1641487/100‑1 (MQ=255) aTGGCAGAGTCGGAACCTAAAGCAATTT‑CCCACCCACGATATCCGTCGTACCCTGATACGCCGTGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAg < 2:1280080/100‑1 (MQ=255) aTGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAg > 1:1352705/1‑100 (MQ=255) tGGCAGAGTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGCAATCGTTGTTTAGAGTCAGGAACCCGTAACCCAg > 2:1013032/1‑99 (MQ=255) ggCAGAGTCGGAACCGAAAGCAATTT‑ACCCCCCACGATATCCGTCGTACCCTGATACGCAGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTCCCCAGtt > 1:592538/1‑100 (MQ=255) agagTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTg < 1:182451/100‑1 (MQ=255) agagTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTCATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGttttn < 1:1349920/100‑2 (MQ=255) agagTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCCTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTg < 1:1274401/100‑1 (MQ=255) agTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTc < 1:741208/100‑1 (MQ=255) agTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTc < 1:1089677/100‑1 (MQ=255) gTCGGAACCGAAAGCAATTT‑CCCCCCCTCGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTca < 2:571812/100‑1 (MQ=255) gTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTca > 1:485155/1‑100 (MQ=255) gTCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTca < 1:743970/100‑1 (MQ=255) tCGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTcac < 2:1352325/100‑1 (MQ=255) cGGAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTcaca > 2:1301469/1‑100 (MQ=255) cGGAACCGAAAGCAA‑TTACCCCCCCACGAGATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTcaca < 1:492166/100‑1 (MQ=255) gAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATc > 2:1420780/1‑100 (MQ=255) gAACCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATc < 2:705272/100‑1 (MQ=255) aCCGAAAGCAATTT‑CCTCCCCATGTTATCCGTCGTACCCTGATACGCCGCGGAATCGTGGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACAt < 2:1523808/97‑1 (MQ=255) aCCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCac < 1:1491723/100‑1 (MQ=255) aCCGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCac < 2:1599134/100‑1 (MQ=255) ccaaaaTCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCacc < 2:1092414/97‑1 (MQ=255) ccGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCacc < 1:675777/100‑1 (MQ=255) cGAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCaccg > 1:1501047/1‑100 (MQ=255) gAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCaccgc > 2:592302/1‑100 (MQ=255) gAAAGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCaccgc > 1:458159/1‑100 (MQ=255) aaGCAATTT‑CCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCaccgcta > 1:780892/1‑100 (MQ=255) | CACCTGCAGTGGTGACATTTCCCGACATCACACCGCTGTTATGGATATTAATGTGTTGACTTGCCATATTAATGGCAGAGTCGGAACCGAAAGCAATTTCCCCCCCCACGATATCCGTCGTACCCTGATACGCCGCGGAATCGTTGTTAAGAGTCAGGATCCCGGTACCCAGTTTTGTCACATCACCGCTA > NC_000913/1594150‑1594340 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |