| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,580,930 | (A)9→8 | intergenic (‑125/‑208) | yhhX ← / → yhhY | putative oxidoreductase/aminoacyl nucleotide detoxifying acetyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,580,922 | 0 | A | . | 98.2% | 255.2 / ‑1.9 | 57 | intergenic (‑117/‑216) | yhhX/yhhY | putative oxidoreductase/aminoacyl nucleotide detoxifying acetyltransferase |
| Reads supporting (aligned to +/- strand): ref base A (0/1); new base . (33/23); total (33/24) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.21e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.90e-01 | |||||||||||
GTGGTTATTTACACCTTAGCGCAAAGCGGACGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCCGCGAGGGTCTTCCTGATCG > NC_000913/3580824‑3581015 | gtggtTATTTACACCTTAGCGCAAAGCGGACGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTACCGTGGATAAATTGAGAACGAAAGATCaa > 1:1093655/1‑100 (MQ=255) ggtTATTTACACCTTAGCGCAAAGCGGACGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCaaaa > 2:850908/1‑100 (MQ=255) gtTATTTACACCTTAGCGCAAAGCGGACGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCaaaaa < 2:458655/100‑1 (MQ=255) aTTTACACCTTAGCGCAAAGCGGACGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCaaaaaaaa > 1:1529244/1‑100 (MQ=255) tttACACCTTAGCGCAAAGCGGACGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCaaaaaaaag > 1:1201471/1‑99 (MQ=255) ttACACCTTAGCGCAAAGCGGACGTGGTTCCTACTGGAGTGGGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCaaaaaaaagc < 2:541738/100‑3 (MQ=255) ttACACCTTAGCGCAAAGCGGACGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCaaaaaaaagc > 1:1137996/1‑98 (MQ=255) acacCTTAGCGCAAAGCGGACGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCaaaaaaaagcca > 1:619288/1‑96 (MQ=255) cacCTTAGCGCAAAGCGGACGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATC‑AAAAAAAAGCCAg > 1:117781/1‑100 (MQ=255) tAGCGCAAAGCGGACGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATC‑AAAAAAAAGCCAGCAccc > 1:391244/1‑100 (MQ=255) aGCGCAAAGCGGACGTGGGTCCTACTGTCGTGCGCATAACGAACACAAGCACTCCTGTGGATAAATTGAGATCGAAAGATC‑AAAAAAAAGCCAGCACCCg > 1:332833/1‑100 (MQ=255) gcgcAAAGCGGACGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCgg > 1:1608045/1‑100 (MQ=255) cgcAAAGCGGACGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCggc < 2:843772/100‑1 (MQ=255) gcAAAGCGGGCGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCggct > 1:811223/1‑100 (MQ=255) gcAAAGCGGACGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCggct > 1:1523238/1‑100 (MQ=255) aaaGCGGACGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCggctg < 1:1559709/99‑1 (MQ=255) ggACGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAg < 2:587293/100‑1 (MQ=255) aCGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTa < 1:915012/100‑1 (MQ=255) cGTGGTTCCTACTGTAGTGCGCATAACGAACACAAGCCCTCCCCTGGATAAATTGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCTGCTGGCTAAGTaa < 1:1303426/100‑1 (MQ=255) gTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAAt < 2:1051081/100‑1 (MQ=255) ggTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATAc < 2:1117123/100‑1 (MQ=255) gTTCCTATTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATAc < 2:1694507/99‑1 (MQ=255) ttCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTg > 2:1293000/1‑100 (MQ=255) tCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATC‑AAACAAAAGCCAGCACCCGGCTGGCTAAGTAATACTgg > 1:957227/1‑100 (MQ=255) tCCTACTGGAGTGAGCATAACGAACACAAGCATTCCCGTGAATAAATTGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTgg < 1:1531951/100‑1 (MQ=255) cTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCGTCTGGCTAAGTAATACTGGaa < 1:876551/100‑1 (MQ=255) tACTGGAGTGCTCATAACGAACACAAGCACTTCCGTGGATATATTGAGGACGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAg < 2:1385102/100‑1 (MQ=255) aCTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGaa > 2:874116/1‑98 (MQ=255) tGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCaa < 2:1031393/100‑1 (MQ=255) tGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGa > 2:194031/1‑100 (MQ=255) gcgcATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAg > 1:1781080/1‑100 (MQ=255) cgcATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGc < 1:1342945/100‑1 (MQ=255) aTAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATC‑‑AAAAAAATCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATg > 1:1543320/1‑100 (MQ=255) aCGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGt > 1:574161/1‑99 (MQ=255) aCGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTc > 2:848894/1‑100 (MQ=255) cGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCg > 2:794375/1‑100 (MQ=255) gAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGt > 2:1362600/1‑100 (MQ=255) aaCACAAGCCCACCCGTGGATAAATTGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATTCTGGAAGCTATGTGAGCAATGTCGt < 1:1705325/99‑1 (MQ=255) aaCACAAGCATTCCCGTGGATAAATAGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTg > 1:367140/1‑100 (MQ=255) aaCACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGt > 1:672179/1‑99 (MQ=255) caAGCACTCCCGTGGATAAATTGAGAACGACAGGTC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAAAGTCGTGCttt > 1:1192322/1‑100 (MQ=255) caAGCACTCCCGTGGATAAATTGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCttt > 2:896933/1‑100 (MQ=255) caAGCACTCCCGTGGATAAATTGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCttt > 1:1673446/1‑100 (MQ=255) aaGCACTGCCGTGGATAAATTGAGAAAGAAAGA‑AAAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTc < 1:136257/100‑1 (MQ=255) aCTCCCGTGGATAAATTGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGt < 2:391246/100‑1 (MQ=255) cTCCCGTGGATAAATTGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGtt > 2:1451530/1‑100 (MQ=255) cccGTGGATAAATTGAGAATGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTtct < 2:619292/100‑1 (MQ=255) cccGTGGATAAATTGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTtct > 2:340702/1‑100 (MQ=255) gATAAATTGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAACAATGTGAGCAATGTCGTGCTGTCAGGTTCTCCGCGa > 2:336349/1‑100 (MQ=255) aaaTTGATAACAAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCCGCGAg < 2:765896/98‑1 (MQ=255) aaaTTGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCCGCGAggg < 2:581749/100‑1 (MQ=255) aaaTTGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCCGCGAggg < 2:1317713/100‑1 (MQ=255) aaTTGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCCGCGAGGGt > 2:642824/1‑100 (MQ=255) tGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATATCATGCTTTCAGGTTCTCCGCAAGGGt > 2:1000340/1‑97 (MQ=255) tGAGAACGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTAAGCAATGTCGTGCTTTCAGGTTCTCCGCGAGGGTCtt > 2:1000408/1‑100 (MQ=255) agaACGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCCGCGAGGGTCTTcc < 2:1302715/100‑1 (MQ=255) agaACGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCCGCGAGGGTCTTcc > 2:599513/1‑100 (MQ=255) gaACGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCCGCGAGGGTCTTCCt > 2:1332789/1‑100 (MQ=255) aaCGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCCGCGAGGGTCTTCCTg < 2:1476547/100‑1 (MQ=255) aaCGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCCGCGAGGGTCTTCCTg < 2:640959/100‑1 (MQ=255) aaCGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCCGCGAGGGTCTAcc > 2:410763/1‑98 (MQ=255) cGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCCGCGAGGGTCTTCCTGAt > 1:1465910/1‑100 (MQ=255) cGAAAGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCCGCGAGGGTCTTCCTGAt > 2:1770050/1‑100 (MQ=255) aaaGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCCGCGAGGGTCTTCCTGATcg < 2:1529255/100‑1 (MQ=255) aaaGATC‑AAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCCGCGAGGGTCTTCCTGATcg > 1:86942/1‑100 (MQ=255) | GTGGTTATTTACACCTTAGCGCAAAGCGGACGTGGTTCCTACTGGAGTGCGCATAACGAACACAAGCACTCCCGTGGATAAATTGAGAACGAAAGATCAAAAAAAAAGCCAGCACCCGGCTGGCTAAGTAATACTGGAAGCAATGTGAGCAATGTCGTGCTTTCAGGTTCTCCGCGAGGGTCTTCCTGATCG > NC_000913/3580824‑3581015 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |