| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,053,516 | (G)6→7 | coding (2663/2745 nt) | torS ← | hybrid sensory histidine kinase in two‑component regulatory system with TorR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,053,510 | 1 | . | G | 94.5% | 241.6 / 8.0 | 73 | coding (2669/2745 nt) | torS | hybrid sensory histidine kinase in two‑component regulatory system with TorR |
| Reads supporting (aligned to +/- strand): ref base . (2/2); new base G (33/36); total (35/38) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GTTCTTAACTGGCTGATATTGATTCAAATCGCGTTCAGGTCTTTCTTATGCAACCATGCTTCCAGAGCGGCAACACTGCGTGTAATTTCTTCGTGTGGA‑A‑GGGGGGCAGATAATGGCTGCTGCTCCAGTTGTGCGCATAGCTGGCTGGCGATATGCATTCCCAGACTCGAGCAACTGCTTTTTAGCTGATGCGC > NC_000913/1053411‑1053604 | gttCTTAACTGGCTGATATTGATTCAAATCGCGTTCAGGTCTTTCTTATGCAACCATGCTTCCAGAGCGGCAACACTGCGCGTAATTTCTTCGTGTGGa‑a > 2:1249066/1‑100 (MQ=255) tCTTAACTGGCTGATATTGATTCAAATCGCGTTCAGGTCTTTCTTATGCAACCATGCTTCCGGAGCGGCAACACTGCGTGTAATTTCTTCGTGTGGA‑A‑gg > 2:1427273/1‑100 (MQ=255) tAACTGGCTGATATTGATTCAAATCGCGTTCAGGTCTTTCTTATGCAACCATGCTTCCAGAGCGGCAACACTGCGTGTAATTTCTTCGTGTGGA‑A‑ggggg > 2:957749/1‑100 (MQ=255) aaCTGGCTGATATTGATTCAAATCGCGTTCAGGTCTTTCTTATGCAACCATGCTTCCAGAGCGGCAACACTGCGTGTAATTTCTTCGTGTGGA‑A‑gggggg < 2:764027/100‑1 (MQ=255) aCTGGCTGATATTGATTCAAATCGCGTTCAGGTCTTTCTTATGCAACCATGCTTCCAGAGCGGCAACACTGCGTGTAATTTCTTCGTGTGGA‑A‑gggg > 1:1031302/1‑97 (MQ=255) cTGGCTGATATTGATTCAAATCTCGTTTAGGTCTTTTTTATGCAACCATGCTTCCAGAGCGGCAACACTGCGTGTAATTTCTTCGTGTGGA‑A‑GGGGGGCa < 2:285062/100‑1 (MQ=255) tGGCTGATATTGATTCAAATCGCGTTCAGGTCTTTCTTATGCAACCATGCTTCCAGAGCGGCAACACTGCGTGTAATTTCTTCGTGTGGA‑A‑gggggggca < 2:1718020/100‑4 (MQ=255) ggCTGCTATTGATTCAAATCACGAACAGGTAATTATTCTGCAACCAAGCTTCGAGAGAAGCAACAATGCGCGTAATTTCAGAGTGTGGA‑A‑gggggaccag > 1:893973/1‑95 (MQ=255) cTGATATTGATTCAAATCGCGTTCAGGTCTTTCTTATGCAACCATGCTTCCAGAGCGGCAACACTGCGTGTAATTTCTTCGTGTGGA‑AGGGGGGGCAGAt > 2:668595/1‑100 (MQ=255) tGATATTGATTCAAATCGCGTTCAGGTCTTTCTTATGCAACCATGCTTCCAGAGCGGCAACACTGCGTGTAATTTCTTCGTGTGGA‑AGGGGGGGCAGATa > 2:232445/1‑100 (MQ=255) tGATATTGATTCAAATCGCGTTCAGGTCTTTCTTATGCAACCATGCTTCCAGAGCGGCAACACTGCGTGTAATTTCTTCGTGTGGA‑AGGGGGGGCAGATa < 1:257760/100‑1 (MQ=255) tGATATTGATTCAAATCGCGTTCAGGTCTTTCTTATGCAACCATGCTTCCAGAGCGGCAACACTGCGTGTAATTTCTTCGTGTGGA‑AGGGGGGGCAGATa > 2:1566483/1‑100 (MQ=255) tatTGATTCAAATCGCTTTCAGGTCTTTCTTATGCAACCATGCTTCCAGAGCGGCAACACTGCGTGTAATTTCTTCGTGTGGA‑AGGGGGGGCAGATAATg < 2:688981/100‑1 (MQ=255) tatTGATTCAAATCGCGTTCAGGTCTTTCTTATGCAACCATGCTTCCAGAGCGGCAACACTGCGTGTAATTTCTTCGTGTGGA‑AGGGGGGGCAGATAATg > 2:1682273/1‑100 (MQ=255) atTGATTCAAATCGCGTTCAGGTCTTTCTTATGCAACCATGCTTCCAGAGCGGCAACACTGCGTGTAATTTCTTCGTGTGGA‑AGGGGGGGCAGATAATgg < 1:1344169/100‑1 (MQ=255) ttGATTCAAATCGCGTTCAGGTCTTTCTTATGCAACCATGCTTCCAGAGCGGCAACACTGCGTGTAATTTCTTCGTGTGGA‑AGGGGGGGCAGATAATGgc < 2:342791/100‑1 (MQ=255) ttGATTCAAATCGCGTTCAGGTCTTTCTTATGCAACCATGCTTCCAGAGCGGCAACACTGCGTGTAATTTCTTCGTGTGGA‑AGGGGGGGCAGATAATGgc < 1:91650/100‑1 (MQ=255) gATTCAAATCGCGTTCAGGTCTTTCTTATGCAACCATGCTTCCAGAGCGGCAACACTGCGTGTAATTTCTTCGTGTGGA‑AGGGGGGGCAGATAATGgctg < 2:444168/100‑1 (MQ=255) gATTCAAATCGCGTTCAGGTCTTTCTTATGCAACCATGCTTCCAGAGCGGCAACACTGCGTGTAATTTCTTCGTGTGGA‑AGGGGGGGCAGATAATGgctg > 1:1669575/1‑100 (MQ=255) gATTCAAATCGCGTTCAGGTCTTTCTTATGCAACCATGCTTCAAGAGGGGGAACAGTGCGTGTAATTTCTTCGTGTGGA‑AGGGGGGGCAGATAATgg > 1:1451416/1‑97 (MQ=255) ttCAAATCGCGTTCAGGTCTTTCTTATGCAACCATGCTTCCAGAGCGGCAACACTGCTTGTAATTTCTTCGTGTGGA‑AGGGGGGGCAGATAATGgctgct < 1:12189/100‑1 (MQ=255) ttCAAATCGCGTTCAGGTCTTTCTTATGCAACCATGCTTCCAGAGCGGCAACACTGCGTGTAATTTCTTCGTGTGGA‑AGGGGGGGCAGATAATGgctgct < 1:216160/100‑1 (MQ=255) tctaaTCGCTTTCAGGTCTTTCTTATGCAACCAGGCTTTTAGAGGGGCAACACTGCGTGTAATTTCTGCTGGTGGATG‑GGGGGGCAGATAATGgctgcgg < 1:68417/97‑3 (MQ=255) cAAATCGCGTTCAGGTCTTTCTTATGCAACCATGCTTCCAGAGCGGCAACACTGCGTGTAATTTCTTCGTGTGGA‑AGGGGGGGCAGATAATGgctgctgc > 1:591564/1‑100 (MQ=255) aaaTCGCGTTCAGGTCTTTCTTATGCAACCATGCTTCCAGAGCGGCAACACTGCGTGTAATTTCTTCGTGTGGA‑AGGGGGGGCAGATAATGgctgctgct > 1:1029645/1‑100 (MQ=255) aaaTCGCGTTCAGGTCTTTCTTATGCAACCATGCTTCCAGAGCGGCAACACTGCGTGTAATTTCTTCGTGTGGA‑AGGGGGGGCAGATAATGgctgctgct < 1:88581/100‑1 (MQ=255) aaaTCGCGTTCAGGTCTTTCTTATGCAACCATGCTTACAGAGCGGCAACACTGCGTGTAATTTCTTAGTGTGGA‑AGGGGGGGCAGATAATGgctgctgct > 1:1813405/1‑100 (MQ=255) aTCGCGTTCAGGTCTTTCTTATGCAACCATGCTTCCAGAGCGGCAACACTGCGTGTAATTTCTTCGTGTGGA‑AGGGGGGGCAGATAATGGCTGCTGCTcc < 2:1068384/100‑1 (MQ=255) aTCGCGTTCAGGTCTTTCTTATGCAACCATGCTTCCAGAGCGGCAACACTGCGTGTAATTTCTTCGTGTGGA‑AGGGGGGGCAGATAATGGCTGCTGCTcc < 2:1002085/100‑1 (MQ=255) tCGCGTTCAGGTCTTTCTTATGCAACCATGCTTCCAGAGCGGCAACACTGCGTGTAATTTCTTCGTGTGGA‑AGGGGGGGCAGATAATGGCTGCTGCTCCa < 1:1127667/100‑1 (MQ=255) tCGCGTTCAGGTCTTTCTTATGCAACCATGCTTCCAGAGCGGCAACACTGCGTGTAATTTCTTCGTGTGGA‑AGGGGGGGCAGATAATGGCTGCTGCTCCa < 1:1450626/100‑1 (MQ=255) gcgTTCAGGTCTTTCTTATGCAACCATGCTTCCAGAGCGGCAACACTGCGTGTAATTTCTTCGTGTGGA‑AGGGGGGGCAGATAATGGCTGCTGCTCCAGt < 1:1072726/100‑1 (MQ=255) gcgTTCAGGTCTTTCTTATGCAACCATGCTTCCAGAGCGGCAACACTGCGTGTAATTTCTTCGTGTGGA‑AGGGGGGGCAGATAATGGCTGCTGCTCCAGt < 1:732880/100‑1 (MQ=255) gTTCAGGTCTTTCTTATGCAACCATGCTTCCAGAGCGGCAACACTGCGTGTAATTTCTTCGTGTGGA‑AGGGGGGGCAGATAATGGCTGCTGCTCCAGTtg < 1:1126548/100‑1 (MQ=255) gTTCAGGTCTTTCTTATGCAACCATGCTTCCAGAGCGGCAACACTGCGTGTAATTTCTTCGTGTGGA‑AGGGGGGGCAGATAATGGCTGCTGCTCCAGTtg < 2:1376540/100‑1 (MQ=255) cAGGTCTTTCTTATGCAACCATGCTTCCAGAGCGGCAACACTGCGTGTAATTTCTTCGTGTGGA‑A‑GGGGGGCAGATAATGGCTGCTGCTCCAGTTGTgc > 2:1743755/1‑99 (MQ=255) ggTCTTTCTTATGCAACCATGCTTCCAGAGCGGCAACACTGCGTGTAATTTCTTCGTGTGGA‑AGGGGGGGCAGATAATGGCTGCTGCTCCAGTTGTgcgc < 2:1126708/100‑1 (MQ=255) ctttcttATGCAACCATGCTTCCAGAGCGGCAACACTGCGTGTAATTTCTTCGTGTGGA‑AGGGGGGGCAGATAATGGCTGCTGCTCCAGTGGTGCGCATa > 1:811114/1‑100 (MQ=255) tcttATGCAACCATGCTTCCAGAGCGGCAACACTGCGTGTAATTTCTTCGTGTGGA‑AGGGGGGGCAGATAATGGCTGCTGCTCCAGTTGTGCGCATAgct > 2:518146/1‑100 (MQ=255) cttATGCAACCATGCTTCCAGAGCGGCAACACTGCGTGTAACTTCTTCGTGAGGA‑AGGGGGGGCAGATAATGGCTGCTGCTCCAGTTGTTCGCATAgctg > 2:1301177/1‑100 (MQ=255) tATGCAACCATGCTTCCAGAGCGGCAACACTGCGTGTAATTTCTTCGTGTGGA‑AGGGGGGGCAGATAATGGCTGCTGCTCCAGTTGTGCGCATAgctggc < 1:1573067/100‑1 (MQ=255) aTGCAACCATGCTTCCAGAGCGGCAACACTGCGTGTAATTTCTTCGTGTGGA‑AGGGGGGGCAGATAATGGCTGCTGCTCCAGTTGTGCGCATAgctggct < 1:31807/100‑1 (MQ=255) aTGCAACCATGCTTCCAGAGCGGCAACACTGCGTGTAATTTCTTCGTGTGGA‑AGGGGGGGCAGATAATGGCTGCTGCTCCAGTTGTGCGCATAgctggct > 1:907131/1‑100 (MQ=255) gCAACCATGCTGCCAGAGCGGCAACACTGCGTGTAATTTCTTCGTGTGGA‑AGGGGGGGCAGATAATGGCTGCTGCTCCATTTGTGCGCATAGctggctgg < 1:1735133/100‑1 (MQ=255) cAACCATGCTTCCAGAGCGGCAACACTGCGTGTAATTTCTTCGTGTGGA‑AGGGGGGGCAGATAATGGCTGCTGCTCCAGTTGTGCGCATAGCtggctggc < 2:894660/100‑1 (MQ=255) cAACCATGCTTCCAGAGCGGCAACACTGCGTGTAATTTCTTCGTGTGGA‑A‑GGGGGGCAGATAATGGCTGCTGCTCCAGTTGTGCGCATAGCTGGCTGGCg > 1:507157/1‑100 (MQ=255) aCCATGCTTCCAGAGCGGCAACACTGCGTGTAATTTCTTCGTGTGGA‑AGGGGGGGCAGATAATGGCTGCTGCTCCAGTTGTGCGCATAGCTGGCTGGCGa > 2:228200/1‑100 (MQ=255) cATGCTTCCAGAGCGGCAACACTGCGTGTAATTTCTTCGTGTGGA‑AGGGGGGGCAGATAATGGCTGCTGCTCCAGTTGTGCGCATAGCTGGCTGGCGata < 2:1348641/100‑1 (MQ=255) cATGCTTCCAGAGCGGCAACACTGCGTGTAATTTCTTCGTGTGGA‑AGGGGGGGCAGATAATGGCTGCTGCTCCAGTTGTGCGCATAGCTGGCTGGCGata < 1:1367442/100‑1 (MQ=255) tGCTTCCAGAGCGGCAACACTGCGTGTAATTTCTTCGTGTGGA‑AGGGGGGGCAGATAATGGCTGCTGCTCCAGTTGTGCGCATAGCTGGCTGGCGATATg < 1:107257/100‑1 (MQ=255) cTTCCAGAGCGGCAACACTGCGTGTAATTTCTTCGTGTGGA‑AGGGGGGGCAGATAATGGCTGCTGCTCCAGTTGTGCGCATAGCTGGCTGGCGATATGCa > 1:1413221/1‑100 (MQ=255) ccAGAGCGGCAACACTGCGTGTAATTTCTTCGTGTGGA‑AGGGGGGGCAGATAATGGCTGCTGCTCCAGTTGTGCGCATAGCTGGCTGGCGATATGCATTc > 1:80306/1‑100 (MQ=255) cAGAGCGGCAACACTGCGTGTAATTTCTTCGTGTGGA‑AGGGGGGGCAGATAATGGCTGCTGCTCCAGTTGTGCGCATAGCTGGCTGGCGATATGCATTcc < 2:691439/100‑1 (MQ=255) cAGAGCGGCAACACTGCGTGTAATTTCTTCGTGTGGA‑AGGGGGGGCAGATAATGGCTGCTGCTCCAGTTGTGCGCATAGCTGGCTGGCGATATGCATTcc > 2:835839/1‑100 (MQ=255) agagCGGCAACACTGCGTGTAATTTCTTCGTGTTGA‑AGGGGGGGCAGATAATGGCTGCTGCTCCAGTTGTGCGCATAGCTGGCTGGCGATATGCATTccc < 2:814146/100‑1 (MQ=255) ggCAACACTGCGTGTAATTTCTTCGTGTGGA‑AGGGGGGGCAGATAATGGCTGCTGCTCCAGTTGTGCGCATAGCTGGCTGGCGATATGCATTCCCAGACt < 2:1400642/100‑1 (MQ=255) ggCAACACTGCGTGTAATTTCTTCGTGTGGA‑AGGGGGGGCAGATAATGGCTGCTGCTCCAGTTGTGCGCATAGCTGGCTGGCGATATGCATTCCCAGACt > 2:279722/1‑100 (MQ=255) gCAACACTGCGTGTAATTTCTTCGTGTGGA‑AGGGGGGGAAGATAATGGCTGCTGCTCCAGTTGTGCGCATAGCTGGCTGGTGATATGCATTCCCAGAc < 1:1073888/98‑1 (MQ=255) cAACACTGCGTGTAATTTCTTCGTGTGGA‑AGGGGGGGCAGATAATGGCTGCTGCTCCAGTTGTGCGCATAGCTGGCTGGCGATATGCATTCCCAGACTCg > 2:1062411/1‑100 (MQ=255) cAACACTGCGTGTAATTTCTTCGTGTGGA‑AGGGGGGGCAGATAATGGCTGCTGCTCCAGTTGTGCGCATAGCTGGCTGGCGATATGCATTCCCAGACTCg < 2:1694739/100‑1 (MQ=255) aaCACTGCGTGTAATTTCTTCGTGTGGA‑AGGGGGGGCAGATAATGGCTGCTGCTCCAGTTGTGCGCATAGCTGGCTGGCGATATGCATTCCCAGACTCGa > 2:1179009/1‑100 (MQ=255) acacTGCGTGTAATTTCTTCGTGTGGA‑AGGGGGGGCAGATAATGGCTGCTGCTCCAGTTGTGCGCATAGCTGGCTGGCGATATGCATTCCCAGACTCGAg > 2:1095822/1‑100 (MQ=255) acaaTGCGTGTAATTTCTTCGTGTGTA‑AGGGGGGGCAGAAAAGGGCTGCTGCTCCAGTTGTGCGCATAGCTGCCTGGCGATATGCATTCCCAGACt < 1:306433/96‑1 (MQ=255) gCGTGTAATTTCTTCGTGTGGA‑AGGGGGGGCAGATAATGGCTGCTGCTCCAGTTGTGCGCATAGCTGGCTGGCGATATGCATTCCCAGACTCGAGCAACt > 2:1736117/1‑100 (MQ=255) gCGTGTAATTTCTTCGTGTGGA‑AGGGGGGGCAGATAATGGCTGCTGCTCCAGTTGTGCGCATAGCTGGCTGGCGATATGCATTCCCAGACTCGAGCAACt > 2:1378429/1‑100 (MQ=255) cGTGTAATTTCTTCGTGTGGA‑AGGGGGGGCAGATAATGGCTGCTGCTCCAGTTGTGCGCATAGCTGGCTGGCGATATGCATTCCCAGACTCGAGCAACTg > 2:1551293/1‑100 (MQ=255) gtAATTTCTTCGTGTGGA‑AGGGGGGGCAGATAATGGCTGCTGCTCCAGTTGTGCGCATAGCTGGCTGGCGATATGCATTCCCAGACTCGAGCAACTGCtt > 2:628690/1‑100 (MQ=255) tAATTTCTTCGTGTGGA‑AGGGGGGGCAGATAATGGCTGCTGCTCCAGTTGTGCGCATAGCTGGCTGGCGATATGCATTCCCAGACTCGAGCAACTGCttt > 1:1406537/1‑100 (MQ=255) aaTTTCTTCGTGTGGA‑AGGGGGGGCAGATAATGGCTGCTGCTCCAGTTGTGCGCATAGCTGGCTGGCGATATGCATTCCCAGACTCGAGCAACTGCtttt > 2:849131/1‑100 (MQ=255) aTTTCTTCGTGTGGA‑AGGGGGGGCAGATAATGGCTGCTGCTCCAGTTGTGCGCATAGCTGGCTGGCGATATGCATTCCCAGACTCGAGCAACTGCttttt < 1:232444/100‑1 (MQ=255) tttCTTCGTGTGGA‑AGGGGGGGCAGATAATGGCTGCTGCTCCAGTTGTGCGCATAGCTGGCTGGCGATATGCATTCCCAGACTCGAGCAACTGCTTTTTa < 2:1699020/100‑1 (MQ=255) ttcttcGTGTGGA‑AGGGGGGGCAGATAATGGCTGCTGCTCCAGTTGTGCGCATAGCTGGCTGGCGATATGCATTCCCAGACTCGAGCAACTGCTTTTTAg < 2:1547170/100‑1 (MQ=255) ttcttcGTGTGGA‑AGGGGGGGCAGATAATGGCTGCTGCTCCAGTTGTGCGCATAGCTGGCTGGCGATATGCATTCCCAGACTCGAGCAACTGCTTTTTAg < 1:1600288/100‑1 (MQ=255) cGTGTGGA‑AGGGGGGGCAGATAATGGCTGCTGCTCCAGTTGTGCGCATAGCTGGCTGGCGATATGCATTCCCAGACTCGAGCAACTGCTTTTTAGCTGAt > 1:683241/1‑100 (MQ=255) gtgtGGA‑AGGGGGGGCAGATAATGGCTGCTGCTCCAGTTGTGCGCATAGCTGGCTGGCGATATGCATTCCCAGACTCGAGCAACTGCTTTTTAGCTGATg < 2:1242587/100‑1 (MQ=255) tgtgGA‑AGGGGGGGCAGATAATGGCTGCTGCTCCAGTTGTGCGCATAGCTGGCTGGCGATATGCATTCCCAGACTCGAGCAACTGCTTTTTAGCTGATgc > 1:502711/1‑100 (MQ=255) tgtgGA‑AGGGGGGGCAGATAATGGCTGCTGCTCCAGTTGTGCGCATAGCTGGCTGGCGATATGCATTCCCAGACTCGAGCAACTGCTTTTTAGCTGATgc > 1:853306/1‑100 (MQ=255) tgtgGA‑AGGGGGGGCAGATAATGGCTGCTGCTCCAGTTGTGCGCATAGCTGGCTGGCGATATGCATTCCCAGACTCGAGCAACTGCTTTTTAGCTGATgc > 1:791172/1‑100 (MQ=255) gtgGA‑AGGGGGGGCAGATAATGGCTGCTGCTCCAGTTGTGCGCATAGCTGGCTGGCGATATGCATTCCCAGACTCGAGCAACTGCTTTTTAGCTGATgcg > 1:549731/1‑100 (MQ=255) tgGA‑AGGGGGGGCAGATAATGGCTGCTGCTCCAGTTGTGCGCATAGCTGGCTGGCGATATGCATTCCCAGACTCGAGCAACTGCTTTTTAGCTGATgcgc > 2:736178/1‑100 (MQ=255) | GTTCTTAACTGGCTGATATTGATTCAAATCGCGTTCAGGTCTTTCTTATGCAACCATGCTTCCAGAGCGGCAACACTGCGTGTAATTTCTTCGTGTGGA‑A‑GGGGGGCAGATAATGGCTGCTGCTCCAGTTGTGCGCATAGCTGGCTGGCGATATGCATTCCCAGACTCGAGCAACTGCTTTTTAGCTGATGCGC > NC_000913/1053411‑1053604 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |