| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,420,793 | (G)6→7 | coding (110/423 nt) | ydaT → | Rac prophage; uncharacterized protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,420,787 | 1 | . | G | 96.8% | 216.3 / 0.3 | 63 | coding (104/423 nt) | ydaT | Rac prophage; uncharacterized protein |
| Reads supporting (aligned to +/- strand): ref base . (1/1); new base G (23/38); total (24/39) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TCAAGCATGAGCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCA‑GGGGG‑GCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGAAAACG > NC_000913/1420691‑1420878 | tCAAGCATGAGCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCA‑ggg < 2:794956/100‑1 (MQ=255)tCAAGCATGAGCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCA‑ggg > 2:1208924/1‑100 (MQ=255)tCAAGCATGAGCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAAAGCAGGACTGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCaag > 1:249738/1‑97 (MQ=255) cAAGCATGAGCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCA‑ggg > 1:1809938/1‑99 (MQ=255) cAAGCATGAGCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGATAGCCAATGCAATTACTGAAGAATATCTGCGCCA‑gggg > 2:1013805/1‑100 (MQ=255) aaGCATGAGCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCA‑ggggg > 1:347362/1‑100 (MQ=255) aTGAGCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCA‑ggggg‑ggcg > 2:62147/1‑97 (MQ=255) tGAGCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCA‑ggggg‑ggcgg > 1:227152/1‑96 (MQ=255) tGAGCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCA‑ggggg‑ggcgg > 1:946463/1‑96 (MQ=255) tGAGCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATATGCGCCA‑ggggg‑ggcgg > 2:75984/1‑96 (MQ=255) gAGCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCA‑ggggg‑ggcggc < 1:369408/100‑6 (MQ=255) gAGCACATCGAATCAGTGTTGTTTGCCCTAGCAGCAGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCA‑ggggg‑ggcggc < 2:814800/100‑6 (MQ=255) aGCACATCGAATCCGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCA‑ggggg‑ggcggc > 1:268125/1‑94 (MQ=255) aGCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGG‑gcggcg < 2:1491004/100‑1 (MQ=255) aGCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGG‑gcggcg < 2:738904/100‑1 (MQ=255) gCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGG‑gcggcg < 2:971745/99‑1 (MQ=255) gCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGG‑GCGGCGa < 1:727582/100‑1 (MQ=255) caTCGAATCAGTGTTGTTTGCCCTAGCAGTCGAAAAAGGGGAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGG‑GCGGCGAAtt < 2:968175/100‑1 (MQ=255) caTCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGG‑GCGGCGAAtt > 1:1068788/1‑100 (MQ=255) caTCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGG‑GCGGCGAAtt < 2:1498450/100‑1 (MQ=255) caTCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGG‑GCGGCGAAtt < 2:745550/100‑1 (MQ=255) caTCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGG‑GCGGCGAAtt < 1:1591533/100‑1 (MQ=255) aTCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGG‑GCGGCGAATTg < 1:238701/100‑1 (MQ=255) aTCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGG‑GCGGCGAATTg < 1:1798303/100‑1 (MQ=255) gAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGG‑GCGGCGAATTGccc > 2:354026/1‑100 (MQ=255) gAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGG‑GCGGCGAATTGccc < 2:1542968/100‑1 (MQ=255) aTCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGG‑GCGGCGAATTGCCCCt < 1:164167/100‑1 (MQ=255) tCAGTGTTGTTTGCCCTAGCAGCCTAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGG‑GCGGCGAATTGCCCCt < 2:446242/99‑1 (MQ=255) tCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGG‑GCGGCGAATTGCCCCTg < 2:946469/100‑1 (MQ=255) tCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGG‑GCGGCGAATTGCCCCTg > 1:1546329/1‑100 (MQ=255) tCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGG‑GCGGCGAATTGCCCCTg < 1:687426/100‑1 (MQ=255) tCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCA‑GGGGG‑GCGGCGAATTGCCCCTgg < 1:1386148/100‑1 (MQ=255) aGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGG‑GCGGCGAATTGCCCCTGGt < 2:889819/100‑1 (MQ=255) aGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGG‑GCGGCGAATTGCCCCTGGt > 1:663985/1‑100 (MQ=255) tgttTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGG‑GCGGCGAATTGCCCCTGGTTCCAg > 1:1049438/1‑100 (MQ=255) tgttTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGG‑GCGGCGAATTGCCCCTGGTTCCAg > 1:569762/1‑100 (MQ=255) gttTGCCCTAGCAGCCTAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGG‑GCGGCGAATTGCCCCTGGTTCCAgg < 2:533076/100‑1 (MQ=255) gttTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGG‑GCGGCGAATTGCCCCTGGTTCCAgg < 2:114342/100‑1 (MQ=255) tttGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGG‑GCGGCGAATTGCCCCTGGTTCCAGGc < 2:663989/100‑1 (MQ=255) ttGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGG‑GCGGCGAATTGCCCCTAGTTCCAGGCa > 2:1268581/1‑100 (MQ=255) gCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGG‑GCGGCGAATTGCCCCTGGTTCCAGGCAAg > 1:289085/1‑100 (MQ=255) gCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGG‑GCGGCGAATTGCCCCTGGTTCCAGGCAAg < 2:267062/100‑1 (MQ=255) gCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGG‑GCGGCGAATTGCCCCTGGTTCCAGGCAAg > 2:1653178/1‑100 (MQ=255) tAGCATCCGCAAAATGGCAAAAAAAGGTAGCCAATTCAAATTCAGAAGAATATCTGCGCCA‑GGGGGTGCGTCGAATTCCCACTGGTTACATGCACGGAc > 1:757615/1‑99 (MQ=255) gcagcCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGG‑GCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTgg < 1:674453/100‑1 (MQ=255) gcagcCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGG‑GCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTgg > 2:1731200/1‑100 (MQ=255) agcCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGCAGAATATCTGCGCCAGGGGGG‑GCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGaa > 2:239901/1‑100 (MQ=255) agcCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGG‑GCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGaa < 2:713084/100‑1 (MQ=255) agcCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGG‑GCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGaa < 2:713010/100‑1 (MQ=255) gcagAAAAAGGGCAGGCATGGGTATCAAATGCAATTACCGCAGAATATCTGCGCCAGGGGGG‑GCGGCGAAATGCCCCTGGGTCCAGACAAGAACAGGaa > 1:144279/4‑99 (MQ=255) cGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGG‑GCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACaa > 2:502733/1‑100 (MQ=255) gAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGG‑GCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAAt > 1:520630/1‑100 (MQ=255) aaaaGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGG‑GCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATca < 2:206045/100‑1 (MQ=255) aGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGG‑GCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATcagca > 1:185845/1‑100 (MQ=255) gggCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGG‑GCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATcagcag > 1:42017/1‑100 (MQ=255) caTGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGG‑GCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAAtatct < 1:777543/100‑1 (MQ=255) tGGGTAGCCAATGCAATTACTGAAGAATATCTGCGACAGGGGGG‑GCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAAtatcta < 1:747463/99‑1 (MQ=255) gggTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGG‑GCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAAtatctatc < 1:1594873/100‑1 (MQ=255) ggTAGTCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGG‑GCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAAtatctatc < 2:404376/99‑1 (MQ=255) ggTAGCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGG‑GCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCa > 1:78708/1‑100 (MQ=255) gCCAATGCAATTACTGAAGAATATCTGCGCCAGGGGGG‑GCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCgt < 2:42017/100‑1 (MQ=255) aTGCAATTACTGAAGAATATCTGCGCCAGGGGGG‑GCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCgttggt < 1:502730/100‑1 (MQ=255) gCAATTACTGAAGAATATCTGCGCCAGGGGGG‑GCGGCGAATTGCCCCTGGTTCCAGGGAAGGACTGGAACAATCAGCAGAATATCTCTCACCgttggttg < 2:1230592/100‑1 (MQ=255) gCAATTACTGAAGAATATCTGCGCCAGGGGGG‑GCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCgttggttg < 2:707348/100‑1 (MQ=255) aCTGAAGAATATCTGCGCCAGGGGGG‑GCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGt < 1:75984/100‑1 (MQ=255) tGAAGAATATGTGCGCCAGGGGGG‑GCGGCGAATTGCCTCTGGTTCCAGGCAAGGACTGGAACAATTAGCAGAATATCTATCACCGTTGGTTGAAAgg < 1:1268100/97‑1 (MQ=255) gaagaaTATCTGCGCCAGGGGGG‑GCGGCGAATTGCCCCTGGTTCCAGGGAAGGACTGGGACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGaa > 1:1351428/1‑100 (MQ=255) gaagaaTATCTGCGCCAGGGGGG‑GCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGaa > 1:96261/1‑100 (MQ=255) gaagaaTATCTGCGCCAGGGGGG‑GCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGaa > 1:757316/1‑100 (MQ=255) gaaTATCTGCGCCAGGGGGG‑GCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAAc < 1:1460809/99‑1 (MQ=255) aaTATCTGCGCCAGGGGGG‑GCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGa < 1:1653167/100‑1 (MQ=255) aaTATCTGCGCCAGGGGGG‑GCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGa > 2:441215/1‑100 (MQ=255) atatCTGCGCCAGGGGGG‑GTGGCGAATTGCCACTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGaa < 2:1246388/100‑1 (MQ=255) tCTGCGCCAGGGGGG‑GCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGAAAAc < 1:1731187/100‑1 (MQ=255) cTGCGCCAGGGGGG‑GCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGAAAACg > 1:736825/1‑100 (MQ=255) cTGCGCCAGGGGGG‑GCGGCAAATAGCCCCTGGTTCAAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGAAAACg > 1:899822/1‑100 (MQ=255) | TCAAGCATGAGCACATCGAATCAGTGTTGTTTGCCCTAGCAGCCGAAAAAGGGCAGGCATGGGTAGCCAATGCAATTACTGAAGAATATCTGCGCCA‑GGGGG‑GCGGCGAATTGCCCCTGGTTCCAGGCAAGGACTGGAACAATCAGCAGAATATCTATCACCGTTGGTTGAAAGGTGAAACGAAAACG > NC_000913/1420691‑1420878 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |