New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1068490	NA (NA)	8 (0.120)	8/182	9.0	NA	intergenic (+236/+21)	ymdF/rutG	KGG family protein/pyrimidine permease
	?	NC_000913	= 1068495	NA (NA)					intergenic (+241/+16)	ymdF/rutG	KGG family protein/pyrimidine permease
Rejected: Coverage evenness skew score above cutoff.

GCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTGGCGGTGGAACGTCAACCAACTTTCTGCTTAACAACGCATTGAGTAAAATCGCG  >  NC_000913/1068392‑1068589                                                                                                   |                                                                                                    gCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGt                                                                                                    >  2:970727/1‑100 (MQ=255)     tatatTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAAcc                                                                                                >  1:702298/1‑100 (MQ=255)     tatatTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAAcc                                                                                                >  1:879141/1‑100 (MQ=255)       tatTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAAcccc                                                                                              >  1:302990/1‑100 (MQ=255)          tGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCcggc                                                                                           >  2:797471/1‑100 (MQ=255)           gAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCcggcg                                                                                          <  2:1136484/100‑1 (MQ=255)            aaTTTGCACTGTTTAGTAGGCCGGATAAGGCGATAACGCCGCAACCGGCATGAACAATTCGTACGTTGTCAACAATCTGCACCTCCGTTTACCCcggc                                                                                           >  1:1516441/1‑98 (MQ=18)             aTTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGt                                                                                        <  2:1399210/100‑1 (MQ=255)             aTTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATATGCACCGCCGGTAACCCcgacg                                                                                          >  2:1091734/1‑98 (MQ=255)               ttGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGttt                                                                                      <  2:1419819/100‑1 (MQ=255)                 gCACTGTTTTGTAGGCCGTATAAGGCGTTTAGGCTGCATACGGCATGAACAATGCGTACGTTGTCAACTATCTTCTCCTCCTGTAACTCCTGTGGTTTTc                                                                                    <  1:1092031/100‑1 (MQ=255)                 gCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTc                                                                                    >  2:1272723/1‑100 (MQ=255)                  cACTGCTTTGTAGGCCGAATAAGACGTTTACGCCGCATCCGGCATGAACAATGCGTAAGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTc                                                                                    >  1:672498/1‑99 (MQ=25)                    cTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTc                                                                                    >  1:745984/1‑97 (MQ=255)                     tGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGtt                                                                                <  2:32647/100‑1 (MQ=255)                     tGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGtt                                                                                <  1:1111741/100‑1 (MQ=255)                      gTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGTGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGttt                                                                               <  1:1270953/100‑1 (MQ=255)                      gTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTg                                                                                  >  1:464497/1‑97 (MQ=255)                       ttttGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTa                                                                              >  1:772782/1‑100 (MQ=255)                        tttGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTAt                                                                             <  1:1558659/100‑1 (MQ=255)                         ttGTAGGCCGGATAAGGCGTTTACGTCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATg                                                                            <  2:447108/100‑1 (MQ=255)                         ttGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTAt                                                                             >  2:358971/1‑99 (MQ=255)                         ttGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATg                                                                            <  1:113859/100‑1 (MQ=255)                         ttGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATg                                                                            <  1:1762286/100‑1 (MQ=255)                            catgCCGGATGCGGCGTAAACGCCTTATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAAGCCCGGCGGTTTTCTGTTTATGGCt                                                                         >  1:1019383/4‑100 (MQ=25)                              ggCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTcc                                                                       >  2:1522354/1‑100 (MQ=255)                              ggCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTcc                                                                       >  2:871065/1‑100 (MQ=255)                              ggCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCAGCGGTTTTCTGTTTATGGCTcc                                                                       >  2:1448840/1‑100 (MQ=255)                               gCCGGATAAGGCGTTTACGCCGCATCCGGGATGGACAATGCGTACGTTGTCAACAATCTTCACCGCCGGTAACCTGGGAGGTTTTCTGTTTATg                                                                            <  1:948030/94‑1 (MQ=25)                                   gATAAGGCGTTTACGCCGCATACGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGGTTTCTGTTTATGGCTCCtgat                                                                   >  1:1404681/1‑99 (MQ=255)                                    aTAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCtgatga                                                                 >  1:636964/1‑100 (MQ=255)                                     tAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTTTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGaa                                                                <  1:1713939/100‑1 (MQ=255)                                        ggCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGaacaa                                                             >  1:1076676/1‑100 (MQ=255)                                            tttACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTc                                                         <  1:358969/100‑1 (MQ=255)                                             ttACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCt                                                        <  2:647720/100‑1 (MQ=255)                                                cgccgcATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTGGc                                                     >  1:225144/1‑100 (MQ=255)                                                 gccgcATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTggag                                                    >  2:336921/1‑98 (MQ=255)                                                 gccgcATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTGGCg                                                    >  2:1467033/1‑100 (MQ=255)                                                 gccgcATCCGGCATGAACAATGCGTACGGTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTGGc                                                     <  1:386037/99‑1 (MQ=255)                                                  ccgcATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGATTTCTGTTTATGGAAACAGATGAAAAACTACTggagc                                                   >  2:332074/1‑97 (MQ=37)                                                    gcATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTGGCGGTg                                                 <  1:780328/100‑1 (MQ=255)                                                     cATCCGGCATGAACAATGCGTACGTTATCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTGGCGGTgg                                                >  1:899268/1‑100 (MQ=255)                                                        ccGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTGGCGGTGGAAc                                             >  1:497599/1‑100 (MQ=255)                                                        ccGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTGGCGGTGGAAc                                             <  1:753559/100‑1 (MQ=255)                                                            cATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTGGCGGTGGAACGTca                                         <  2:1712315/100‑1 (MQ=255)                                                              tGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTGGCGGTGGAACGTcaac                                       <  1:240358/100‑1 (MQ=255)                                                               gAACAATGCGTACGTTGTCAATAATCTGTACCGCCGGTCTCCCCGGCGGTTTTCTGTTTATGGCTACTGTTGAACGACTTCTGGCGGTGAAACGTcaac                                       <  1:1090719/99‑1 (MQ=255)                                                               gAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTGGCGGTGGAACGTcaacc                                      >  2:768651/1‑100 (MQ=255)                                                               gAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTGGCGGTGGAACGTcaacc                                      <  2:862695/100‑1 (MQ=255)                                                               gAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTGGCGGTGGAACGTcaac                                       >  2:1729026/1‑99 (MQ=255)                                                                aaCAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACACCGGCGGTTTTCTGTATATGGATCATGATGAACAACTTCAGGCGGTGGAACGTcaaca                                      >  1:1242095/1‑98 (MQ=255)                                                                   aaTGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTGGCGGTGGAACGTCAACCAACt                                  <  1:871059/100‑1 (MQ=255)                                                                   aaTGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTGGCGGTGGAACGTCAACCAACt                                  >  2:1302348/1‑100 (MQ=255)                                                                   aaTGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTGGCGGTGGAACGTCAACCAACt                                  >  2:1349993/1‑100 (MQ=255)                                                                    aTGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTGGCGGTGGAACGTcaaccaac                                   <  2:1602397/98‑1 (MQ=255)                                                                    aTGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTGGCGGTGGAACGTCAACCAACtt                                 >  2:1544604/1‑100 (MQ=255)                                                                     tGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTGGCGGTGGAACGTCAACCAACttt                                >  1:464625/1‑100 (MQ=255)                                                                      gCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCCGATGAACAACTTCTGGCGGTGGAACGTCAACCAACTTTc                               <  2:256574/100‑1 (MQ=255)                                                                       cGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTGGCGGTGGAACGTCAACCAACTTTCt                              >  2:262316/1‑100 (MQ=255)                                                                         tACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTGGCGGTGGAACGTCAACCATCTTTCTGc                            <  1:1243613/100‑1 (MQ=255)                                                                         tACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTGGCGGTGGAACGTCAACCAACTTTCTGc                            <  2:1314340/100‑1 (MQ=255)                                                                         tACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTGGCGGTGGAACGTCAACCAACTTTCTGc                            <  1:1349983/100‑1 (MQ=255)                                                                          aCGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTGGCGGTGGAACGTCAACCAACTTTCTGCt                           <  1:1656069/100‑1 (MQ=255)                                                                           cGTTGTCAACAATCTGCACCGCCGGTAACCCCCGCGGTTTTCTGTTTATCGCTCCTGATGAACAACTTCTGGCGGTGGAACCTCAACCAACTTTCTGCtt                          >  2:65992/1‑100 (MQ=255)                                                                            gTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACGACTTCTGGCGGTGGAACGTCAACCAACTTTCTGCTTa                         <  1:970719/100‑1 (MQ=255)                                                                            gTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTGGCTGTGGAACGTCAACCAACTTTCTGCtt                          <  1:1338124/99‑1 (MQ=255)                                                                              tGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTGGCGGTGGAACGTCAACCAACTTTCTGCTTaac                       <  1:1467022/100‑1 (MQ=255)                                                                              tGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTGGCGGTGGAACGTCAACCAACTTTCTGCTTaac                       <  1:772834/100‑1 (MQ=255)                                                                               gTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTGGCGGTGGAACGTCAACCAACTTTCTGCTTaaca                      >  1:1656583/1‑100 (MQ=255)                                                                               gTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTGGCGGTGGAACGTCAACCAACTTTCTGCTTaaca                      <  2:780190/100‑1 (MQ=255)                                                                                tCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTGGCGGTGGAACGTCAACCAACTTTCTGCTTaacaa                     >  2:223013/1‑100 (MQ=255)                                                                                 caacaaTCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTGGCGGTGGAACGTCAACCAACTTTCTGCTTaacaac                    >  2:44172/1‑100 (MQ=255)                                                                                     aaTCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTGGCGGTGGAACGTCAACCAACTTTCTGCTTAACAACGCAt                <  2:295959/100‑1 (MQ=255)                                                                                     aaTCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTGGCGGTGGAACGTCAACCAACTTTCTGCTTAACAACGCAt                >  1:382431/1‑100 (MQ=255)                                                                                      aTCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTGGCGGTGGAACGTCAACCAACTTTCTGCTTAACAACGCAtt               >  2:1647907/1‑100 (MQ=255)                                                                                         tGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTGGCGGTGGAACGTCAACCAACTTTCTGCTTAACAACGCATTGAg            >  2:169114/1‑100 (MQ=255)                                                                                          gCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACCACTTCTGGCGGTGGAACGTCCACCAACTTTCTGCTTAACAACGCATTGAg            >  1:1637414/1‑99 (MQ=255)                                                                                           cACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTGGCGGTGGAACGTCAACCAACTTTCTGCTTAACAACGCATTGAGTa          >  1:1571918/1‑100 (MQ=255)                                                                                           cACCGCCGGTAACCCCGGCGGTTTTCTGTGTATGGCTCCTGATGAACAACTTCTGGCGGTGGAACGCCAACCAACTTTCTGCTTAACAACGCATTGAGTa          <  1:1091724/100‑1 (MQ=255)                                                                                             ccgccgGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTGGCGGTGGAACGTCAACCAACTTTCTGCTTAACAACGCATTGAGTaaa        >  1:485148/1‑100 (MQ=255)                                                                                                ccgGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTGGCGGTGGAACGTCAACCAACTTTCTGCTTAACAACGCATTGAGTAAAATc     <  2:636968/100‑1 (MQ=255)                                                                                                  ggTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTGGCGGTGGAACGTCAACCAACTTTCTGCTTAACAACGCATTGAGTAAAATcgc   <  1:1522343/100‑1 (MQ=255)                                                                                                   gTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTGGCGGTGGAACGTCAACCAACTTTCTGCTTAACAACGCATTGAGTAAAATcgcg  <  2:772787/100‑1 (MQ=255)                                                                                                   |                                                                                                    GCAATATATTGAATTTGCACTGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATGAACAATGCGTACGTTGTCAACAATCTGCACCGCCGGTAACCCCGGCGGTTTTCTGTTTATGGCTCCTGATGAACAACTTCTGGCGGTGGAACGTCAACCAACTTTCTGCTTAACAACGCATTGAGTAAAATCGCG  >  NC_000913/1068392‑1068589

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.