New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1207790 =8 (0.110)58 (0.930) 51/166 0.2 85.5% coding (290/630 nt) stfP e14 prophage; uncharacterized protein
?NC_000913 1209619 = 13 (0.210)pseudogene (1/501 nt) stfE pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related

AAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAAT  >  NC_000913/1209520‑1209717
                                                                                                   |                                                                                                  
attgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaac                                                                                                    >  1:1027193‑M2/100‑100 (MQ=255)
   gctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGtt                                                                                                 >  2:1496791‑M2/97‑100 (MQ=255)
   cGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAAAGCCTTCTCCCAAACCAACg                                                                                                   >  2:202534/1‑98 (MQ=255)
    ctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcaatgaattttgctccttctcccaaaccaaCGttt                                                                                                >  2:15821‑M2/96‑100 (MQ=255)
      caataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTAt                                                                                              >  1:881829‑M2/94‑100 (MQ=255)
       aataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATg                                                                                             <  1:1645591‑M2/8‑1 (MQ=255)
        ccATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATg                                                                                             <  2:742910/99‑1 (MQ=255)
        ccATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGa                                                                                            >  2:1455435/1‑100 (MQ=255)
        ataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATg                                                                                             >  1:1125906‑M2/92‑99 (MQ=255)
           ccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGaaaa                                                                                         >  1:201355‑M2/89‑100 (MQ=255)
           ccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGaaaa                                                                                         >  1:1794683‑M2/89‑100 (MQ=255)
           ccaccaatcataaccggtatagctatgaaacaggtgcgtcctaatgtagccgttgctgcattgagatttgctaattctccaaaaccaaCGGTTATGaaaa                                                                                         >  1:625670‑M2/89‑100 (MQ=255)
           ccaccaagcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGaaaa                                                                                         <  1:1690795‑M2/12‑1 (MQ=255)
            caccaatcataaccggtatagctatgaatccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttttccttaatcaaCGTTTATGAAAAt                                                                                        <  1:869837‑M2/13‑1 (MQ=255)
                aatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATgaag                                                                                    >  2:662654‑M2/84‑100 (MQ=255)
                 ttCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAGACCAACGTTTATGAAAATgaaga                                                                                   <  1:1398467/100‑1 (MQ=255)
                 ttCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATgaaga                                                                                   <  2:1325167/100‑1 (MQ=255)
                   cataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGaaa                                                                                 >  2:1488306‑M2/81‑100 (MQ=255)
                     taaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATa                                                                               >  1:1478931‑M2/79‑100 (MQ=255)
                     taaccggtatagctatgaaaccggtgcgtactaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATa                                                                               <  2:1406143‑M2/22‑1 (MQ=255)
                      aaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATaa                                                                              >  1:1223489‑M2/78‑100 (MQ=255)
                       cagccTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAAc                                                                             >  1:1382114/1‑100 (MQ=255)
                       accggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAAc                                                                             <  2:1810001‑M2/24‑1 (MQ=255)
                        ccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACa                                                                            >  1:1132592‑M2/76‑100 (MQ=255)
                          ggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAg                                                                          <  2:1539442‑M2/27‑1 (MQ=255)
                          ggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAg                                                                          >  1:417488‑M2/74‑100 (MQ=255)
                           gtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGc                                                                         <  1:653356‑M2/28‑1 (MQ=255)
                           gtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGc                                                                         <  1:212361‑M2/28‑1 (MQ=255)
                            tatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCa                                                                        <  1:376045‑M2/29‑1 (MQ=255)
                              tagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCaaa                                                                      >  1:483081‑M2/70‑100 (MQ=255)
                                gctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATg                                                                    >  2:46979‑M2/68‑100 (MQ=255)
                                 gCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATgg                                                                   <  1:1809122/100‑1 (MQ=255)
                                  cGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGc                                                                  >  1:1015702/1‑100 (MQ=255)
                                   ggAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGca                                                                 <  2:1206830/100‑1 (MQ=255)
                                   ggAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGca                                                                 <  1:522505/100‑1 (MQ=255)
                                   atgaaaccggtgcgttctaatgtagccgttgctgcattgagttttgctccttctcacaaactaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGca                                                                 >  1:1512322‑M2/65‑100 (MQ=255)
                                         ccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTc                                                           <  2:971227‑M2/42‑1 (MQ=255)
                                           ggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCt                                                         >  1:1629108‑M2/57‑100 (MQ=255)
                                            gAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTg                                                        >  1:484727/1‑100 (MQ=255)
                                            gAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTg                                                        >  2:1060817/1‑100 (MQ=255)
                                             tgcgtcctaatgtagccgttgctgcattgagttttgctagttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCt                                                         <  1:1378657‑M2/44‑1 (MQ=255)
                                              gcgtcctaatgtagccgttgctgcattgagttttgctccttctccaaaaccaaCGTTTATGAGAATGAAGAAATAACAAGCAAATGGCATCATTCCTg                                                        >  1:399356‑M2/54‑98 (MQ=255)
                                               cgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCtt                                                     >  1:180818‑M2/53‑100 (MQ=255)
                                               cgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCtt                                                     >  1:498849‑M2/53‑100 (MQ=255)
                                                gtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCttt                                                    <  2:1001314‑M2/49‑1 (MQ=255)
                                                 tcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCtttt                                                   >  2:900445‑M2/51‑100 (MQ=255)
                                                  cctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTa                                                  <  2:1219093‑M2/51‑1 (MQ=255)
                                                   ctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTAc                                                 >  1:59691‑M2/49‑100 (MQ=255)
                                                    taatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTAcc                                                >  2:905269‑M2/48‑100 (MQ=255)
                                                     aatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCa                                               >  1:1492387‑M2/47‑100 (MQ=255)
                                                       tgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAgg                                             >  1:452957‑M2/45‑100 (MQ=255)
                                                         tagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAgggg                                           <  1:504828‑M2/58‑1 (MQ=255)
                                                         tagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAgggg                                           >  1:1772046‑M2/43‑100 (MQ=255)
                                                          agccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAggggg                                          <  1:1282996‑M2/59‑1 (MQ=255)
                                                           gccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGa                                         >  2:1323145‑M2/41‑100 (MQ=255)
                                                             cgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGAtt                                       >  1:642633‑M2/39‑100 (MQ=255)
                                                               ttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTa                                     <  2:1416027‑M2/64‑1 (MQ=255)
                                                                 gctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAAc                                   <  1:724769‑M2/66‑1 (MQ=255)
                                                                 gctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAAc                                   >  2:1661148‑M2/35‑100 (MQ=255)
                                                                  ctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAAc                                   <  2:1672558‑M2/66‑1 (MQ=255)
                                                                  ctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACa                                  >  2:1410127‑M2/34‑100 (MQ=255)
                                                                   aaCAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACAt                                 >  2:1255438/1‑100 (MQ=255)
                                                                      attgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCt                              >  2:188063‑M2/30‑100 (MQ=255)
                                                                       ttgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTACTTTTACCAGGGGGATTTAACATGCtt                             >  2:297181‑M2/29‑100 (MQ=255)
                                                                         gagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTAt                           >  1:1725511‑M2/27‑100 (MQ=255)
                                                                         gagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTAt                           >  1:1623235‑M2/27‑100 (MQ=255)
                                                                           gttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTg                         >  1:999986‑M2/25‑100 (MQ=255)
                                                                             tttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGc                       <  1:551072‑M2/78‑1 (MQ=255)
                                                                             tttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGc                       <  1:1592571‑M2/78‑1 (MQ=255)
                                                                                gctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTAt                    >  2:489985‑M2/20‑100 (MQ=255)
                                                                                 ctccttctcccaaaccaaCGATTATGAAAATGAAGAAATAACAAGCAAATGGCATAATTCCTGCTTTTACCAGGGAGATTTAACATGCTTATTGGCTa                     >  1:1626023‑M2/19‑98 (MQ=255)
                                                                                   ccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTa                 <  1:1488295‑M2/84‑1 (MQ=255)
                                                                                       ctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTTGCTATGTAcgcg             <  1:648142‑M2/88‑1 (MQ=255)
                                                                                       ctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTAcgcg             <  2:1132603‑M2/88‑1 (MQ=255)
                                                                                         cccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTa           >  2:543578‑M2/11‑100 (MQ=255)
                                                                                         cccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTa           >  1:226460‑M2/11‑100 (MQ=255)
                                                                                         cccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTa           >  2:1601155‑M2/11‑100 (MQ=255)
                                                                                         cccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTa           <  2:1560381‑M2/90‑1 (MQ=255)
                                                                                         cccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTa           >  1:809682‑M2/11‑100 (MQ=255)
                                                                                         cccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTAATTGGCTATGTACGCGTa           >  2:644749‑M2/11‑100 (MQ=255)
                                                                                          ncaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTAt          >  1:1024740‑M2/10‑100 (MQ=255)
                                                                                          ccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTAt          >  2:1183158‑M2/10‑100 (MQ=255)
                                                                                          ccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTAGCTATGTACGCGTAt          >  2:855727‑M2/10‑100 (MQ=255)
                                                                                           caaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATc         <  2:1477190‑M2/92‑1 (MQ=255)
                                                                                             aaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATcaa       >  1:1608985‑M2/7‑100 (MQ=255)
                                                                                             aaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTATTACCAGGGGGATTTAACATACGTATTGGCTATGTCCGCGTATcaa       >  1:956277‑M2/7‑100 (MQ=255)
                                                                                                caaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATcaacaa    >  2:64662‑M2/4‑100 (MQ=255)
                                                                                                  aCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATTATTTCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAAt  <  2:1547284‑M2/99‑1 (MQ=255)
                                                                                                   |                                                                                                  
AAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAAT  >  NC_000913/1209520‑1209717

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.