| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| JC JC | NC_000913 | 1,979,486 | IS5 (+) +4 bp | intergenic (‑271/‑264) | insA ← / → uspC | IS1 repressor TnpA/universal stress protein |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1979486 = | 2 (0.030) | 125 (1.670) | 71/198 | 0.0 | 98.4% | intergenic (‑271/‑267) | insA/uspC | IS1 repressor TnpA/universal stress protein |
| ? | NC_000913 | 2101749 = | NA (NA) | noncoding (1195/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 1979489 | 2 (0.030) | 101 (1.350) | 54/198 | 0.4 | 98.0% | intergenic (‑274/‑264) | insA/uspC | IS1 repressor TnpA/universal stress protein |
| ? | NC_000913 | = 2290113 | NA (NA) | noncoding (1/1195 nt) | IS5 | repeat region | |||||
CACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGC‑GGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGA > NC_000913/2101651‑2101843 | cacaAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTaagg > 2:736120/1‑100 (MQ=255) caAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTaaggaa > 1:1315511/1‑100 (MQ=255) aaaaTCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTaaggaag > 1:1728532/1‑100 (MQ=255) aaaaTCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTaaggaag < 2:425381/100‑1 (MQ=255) aaTCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGt > 1:927154/1‑100 (MQ=255) aTCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTg > 1:1664239/1‑100 (MQ=255) cTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCg < 1:83579/100‑1 (MQ=255) gAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGaa > 2:709260/1‑100 (MQ=255) aaaaCGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATTGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATa < 1:1008689/100‑1 (MQ=255) aaaaCGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATa < 2:1555810/100‑1 (MQ=255) aaaaCGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATa > 2:1582046/1‑100 (MQ=255) cGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGc < 2:308190/99‑1 (MQ=255) tACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGC‑ggg < 1:61575/100‑1 (MQ=255) tACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGC‑ggg < 2:556784/100‑1 (MQ=255) aCCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGC‑gggg > 2:1308940/1‑100 (MQ=255) aCCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGC‑ggg < 1:1536865/99‑1 (MQ=255) ccAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGC‑GGGGa > 1:1039760/1‑100 (MQ=255) cAGCATAAATGATCCTGCGCACCAATCAACATACGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGC‑GGGGaa < 1:1566937/100‑1 (MQ=255) aTAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGCAGGTGCGAATAAGC‑GGGGAAAttc > 2:901616/1‑100 (MQ=255) aaaTGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGC‑GGGGAAAttctt > 1:1800316/1‑100 (MQ=255) aaaTGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGC‑GGGGAAAttctt > 2:1189391/1‑100 (MQ=255) aaaTGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGC‑GGGGAAAttctt > 1:1609236/1‑100 (MQ=255) tGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGC‑GGGGAAATTCTtctc < 2:1764988/100‑1 (MQ=255) gATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGC‑GGGGAAATTCTTCTCg < 1:1767083/100‑1 (MQ=255) tCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGC‑GGGGAAATTCTTCTCGGc < 2:1609247/100‑1 (MQ=255) tCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGC‑GGGGAAATTCTTCTCGGc < 1:759484/100‑1 (MQ=255) cTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGC‑GGGGAAATTCTTCTCGGCTg < 2:1664250/100‑1 (MQ=255) gcgcACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGC‑GGGGAAATTCTTCTCGGCTGAc < 1:277635/100‑1 (MQ=255) cgcACCAATCAACAATCGTATCAGAATATGTACTTTCTTTAGGAATTTTTGTTTTATTAAGGTAGGTGCGAATAAGC‑GGGGAAATTCTTCTCGGCTGAc < 1:413518/99‑1 (MQ=37) gcACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGC‑GTGGAAATTCTTCTCGGCTGACTc < 1:819497/100‑1 (MQ=255) gcACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGC‑GGGGAAATTCTTCTCGGCTGACTc < 2:1612085/100‑1 (MQ=255) gcACCAATCAACAACCGTATCAGAATAGATACTTGCTGTAGTAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGC‑GTGGAAATTCTTCTCGGCTGAc < 1:378870/98‑1 (MQ=37) cACCAATCAACAACCCTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGC‑GGGGAAATTCTTCTCGGCTGACTc < 1:1561218/99‑1 (MQ=255) cAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGC‑GGGGAAATTCTTCTCGGCTGACTCAGtc > 1:1395084/1‑100 (MQ=255) aaTCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGC‑GGGGAAATTCTTCTCGGCTGACTCAGtca < 1:275028/100‑1 (MQ=255) tCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGC‑GGGGAAATTCTTCTCGGCTGACTCAGtcatt < 1:1188599/100‑1 (MQ=255) nacaacCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGC‑GGGGAAATTCTTCTCGGCTGACTCAGtcatttc > 1:684503/2‑100 (MQ=255) aacaacCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGC‑GGGGAAATTATTATCGACTGACTCAGtcatt > 2:1600331/1‑98 (MQ=255) acaacCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGC‑GGGGAAATTCTTCTCGGCTGACTCAGtcatttca < 1:541681/100‑1 (MQ=255) caacCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGC‑GGGGAAATTCTTCTCGGCTGACTCAGtcatttcat > 2:639270/1‑100 (MQ=255) caacCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGC‑GGGGAAATTCTTCTCGGCTGACTCAGtcatttcat > 2:264853/1‑100 (MQ=255) acggTATCAGAATCGAAACTTTCTGTAGGAATTTTTGTTTTATTAAGGAAGGAGCGAATAAGC‑GGGGAAATTTTTCTCGGCTGATTCTGTcatttcattt > 1:716519/4‑100 (MQ=21) acCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGC‑GGGGAAATTCTTCTCGGCTGACTCAGTcatttcattt > 2:481126/1‑100 (MQ=255) ccGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGC‑GGGGAAATTCTTCTCGGCTGACTCAGTCatttcatttc > 2:755230/1‑100 (MQ=255) ccGTATCAGAATAGATACTTTATTTAGAAATTTTTGTTTTAATAAGGAAGGTGCGAATATGT‑GGGGAAATTATTGTCGTCTGACGTCGtcatttca > 1:271929/1‑96 (MQ=21) cGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGC‑GGGGAAATTCTTCTCGGCTGACTCAGtcatttcatt < 2:1664824/97‑1 (MQ=255) gTATCAGAATAGATACTTTTTTTAGGAATTTTTGTTTTATTAAGGAATGTGCGATTACGC‑GGTTAAATTCTTCTCGGTTGACCCAGtcatttcatt < 1:1118687/96‑1 (MQ=255) gTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGC‑GGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATttctt > 1:898941/1‑100 (MQ=255) gTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGC‑GGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATttctt > 1:138378/1‑100 (MQ=255) tATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGC‑GGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATttcttc < 2:1315521/100‑1 (MQ=255) aTCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGC‑GGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCa < 1:235953/100‑1 (MQ=255) tCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGC‑GGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCAt < 1:836489/100‑1 (MQ=255) aGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGC‑GGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGt > 1:470629/1‑100 (MQ=255) aGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGC‑GGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGt > 2:681005/1‑100 (MQ=255) aGAATAGATACTTTCTTTAGGAATATTTGTTTTATAAAGGAAGGTACGAATAAGC‑GGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGt > 1:252590/1‑100 (MQ=255) cttccgatcttctttAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGC‑GGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTg < 1:850299/91‑1 (MQ=255) aTAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGC‑GGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGttt > 1:725395/1‑99 (MQ=255) tAGATACTTTCTTTAGCAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGC‑GGTGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGa < 1:1064191/100‑1 (MQ=255) gATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGC‑GGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAg < 2:793012/99‑1 (MQ=255) gATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGC‑GGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGc < 2:686538/100‑1 (MQ=255) gATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGC‑GGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGc < 1:681001/100‑1 (MQ=255) gATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGC‑GGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGc < 2:623204/100‑1 (MQ=255) ctttctttAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGC‑GGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAt < 2:1797881/100‑1 (MQ=255) tttctttAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGC‑GGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAtt < 1:437444/100‑1 (MQ=255) tttctttAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGC‑GGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAtt > 1:637477/1‑100 (MQ=255) tctttAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGC‑GGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAgatcggaag > 2:850305/1‑92 (MQ=255) tctttAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGC‑GGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTACTTCATGTTTGAGCCGAtttt < 1:904217/100‑1 (MQ=255) ctttAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGC‑GGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTACTTCATGTTTGAGCCGAtttta > 2:904223/1‑99 (MQ=255) tttAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGC‑GGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAtttttt > 2:1559831/1‑100 (MQ=255) ttAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGC‑GGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTtc < 2:1798193/100‑1 (MQ=255) aGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGC‑GGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTtctc > 1:1661753/1‑100 (MQ=255) aGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGC‑GGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTtctc > 1:720564/1‑100 (MQ=255) gAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGC‑GGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTccc > 2:442829/1‑100 (MQ=255) tttttGTTTTATTAAGGAAAGTGCGAATAAGC‑GGGGAAATTCTTCTAGACTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTa > 1:1267011/1‑100 (MQ=255) ttttGTTTTATTAAGGAAAATGCGAATAAGC‑GGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTaa > 1:1189595/1‑100 (MQ=255) tttATTAAGGAAGGTGCGAATAAGC‑GGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTAAGCCGATTTTTTCTCCCGTAAATGCCt > 2:297968/1‑100 (MQ=25) tattaAGGAAGGTGCGAATAAGC‑GGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCtt > 1:92967/1‑99 (MQ=32) tattaAGGAAGGTGCGAATAAGC‑GGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTg < 2:796669/100‑1 (MQ=32) tattaAGGAAGGTGCGAATAAGC‑GGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTg < 1:234017/100‑1 (MQ=32) attaAGGAAGGTGCGAATAAGCGGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTTAGCCGATTTTTTCTCCCGTAAATGCCTTg < 1:1719595/100‑1 (MQ=255) attaAGGAAGGTGCGAATAAGC‑GGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCTATTTTTTCTCCCGTAAATTCCTTGa > 2:836169/1‑100 (MQ=9) attaAGGAAGGTGCGAATAAGC‑GGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTGCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGa < 1:709256/100‑1 (MQ=14) | CACAAAATCTGAAAAACGTACCAGCATAAATGATCCTGCGCACCAATCAACAACCGTATCAGAATAGATACTTTCTTTAGGAATTTTTGTTTTATTAAGGAAGGTGCGAATAAGC‑GGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGA > NC_000913/2101651‑2101843 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |