Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913 3,815,859 Δ82 bp [rph][rph] [rph], [rph]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 3815859 3815940 82 72 [0] [0] 70 [rph]–[rph] [rph], [rph]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 38158580 (0.000)63 (0.940) 46/178 0.5 100% pseudogene (24/48 nt) rph ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH
?NC_000913 3815941 = 0 (0.000)pseudogene (609/669 nt) rph ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH

CCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCG  >  NC_000913/3815842‑3816038
                                                                                                   |                                                                                                 
tggtttcatgccttcgctcctcgtcttacttttctacagccaaaaaaaaggcgactcatcagtccccttaaaaatcagtttgccagcgccgccttctgcc                                                                                                   >  2:1123670‑M2/100‑100 (MQ=255)
  gtttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGt                                                                                                 >  1:340714‑M2/98‑100 (MQ=255)
   tttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTc                                                                                                >  2:412020‑M2/97‑100 (MQ=255)
    ttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTcc                                                                                               >  1:103266‑M2/96‑100 (MQ=255)
    ttcatgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTcc                                                                                               <  1:237146‑M2/5‑1 (MQ=255)
      catgccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTcccc                                                                                             >  1:539258‑M2/94‑100 (MQ=255)
         gtgttcgctcctcatcttactgttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTcccc                                                                                             <  1:1148346‑M2/7‑1 (MQ=255)
         gccttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGc                                                                                          <  2:519103‑M2/10‑1 (MQ=255)
            ttcgctcctcatcttacttttctgcagacaaaaaaaaggcgattcgtcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTcccc                                                                                             >  1:630259‑M2/88‑94 (MQ=255)
            ttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACt                                                                                       <  2:1700396‑M2/13‑1 (MQ=255)
            ttcgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACt                                                                                       <  1:80415‑M2/13‑1 (MQ=255)
              tcgctcctcatcttacttttctacagacaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTc                                                                                     <  2:1467456‑M2/15‑1 (MQ=255)
              cgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatctgtttgccagcgccgccttctgcCGTCCCCTGCACTTc                                                                                     <  1:966162‑M2/15‑1 (MQ=255)
              cgctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTc                                                                                     >  1:401942‑M2/86‑100 (MQ=255)
               gctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCa                                                                                    >  2:204798‑M2/85‑100 (MQ=255)
                ctcctcatcttacttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCaa                                                                                   >  2:621472‑M2/84‑100 (MQ=255)
                           tacttttctacagacaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCg                                                                        >  1:1766162‑M2/73‑100 (MQ=255)
                           acttttctacagacaaaaaaaaggtgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCg                                                                        <  2:790908‑M2/28‑1 (MQ=255)
                           acttttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCg                                                                        <  2:466895‑M2/28‑1 (MQ=255)
                               ttctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCtt                                                                    <  1:298253‑M2/32‑1 (MQ=255)
                                tctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTc                                                                   >  1:1172298‑M2/68‑100 (MQ=255)
                                 ctacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCg                                                                  >  1:732585‑M2/67‑100 (MQ=255)
                                  tacagacaagaaaaaggcgactcatcagttgccttaaaaatcagtttgacagcgccgccttttgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCg                                                                  <  1:446668‑M2/34‑1 (MQ=255)
                                  tacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCgg                                                                 >  2:1390855‑M2/66‑100 (MQ=255)
                                  tacagacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCgg                                                                 >  1:762582‑M2/66‑100 (MQ=255)
                                      gacaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtcat                                                             <  2:401944‑M2/39‑1 (MQ=255)
                                       acaaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGtcatc                                                            <  2:1720423‑M2/40‑1 (MQ=255)
                                         aaaaaaaaggcgactcatcagtcgccttaaaaatcagtttgacagcgcagccttctgtCGTACCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCAc                                                          >  1:1279687‑M2/59‑100 (MQ=255)
                                          aaaaaaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACt                                                         >  2:1502300‑M2/58‑100 (MQ=255)
                                            tttaaggcgactgatgagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTAc                                                       >  1:250418‑M2/56‑100 (MQ=255)
                                              taaggcgactgatgagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACg                                                      >  2:1458625‑M2/54‑99 (MQ=255)
                                              aaaggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGt                                                     <  2:82777‑M2/47‑1 (MQ=255)
                                                 ggcgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCa                                                  >  2:1184486‑M2/51‑100 (MQ=255)
                                                   cgactcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATg                                                >  1:646328‑M2/49‑100 (MQ=255)
                                                       tcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCGTCACTACGTTCATGTCgg                                            <  1:1537328‑M2/56‑1 (MQ=255)
                                                       tcatcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCgg                                            <  2:724988‑M2/56‑1 (MQ=255)
                                                        catcagtcgccttaaaaatcagtttgccagtgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGt                                           >  2:1266560‑M2/44‑100 (MQ=255)
                                                          tcagtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGtc                                          <  1:923935‑M2/58‑1 (MQ=255)
                                                             gtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTg                                      >  1:757929‑M2/39‑100 (MQ=255)
                                                             gtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTg                                      <  1:42671‑M2/62‑1 (MQ=255)
                                                             gtcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCGGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTg                                      >  2:1048997‑M2/39‑100 (MQ=255)
                                                              tcgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGc                                     <  2:199912‑M2/63‑1 (MQ=255)
                                                               cgccttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCg                                    <  1:1363400‑M2/64‑1 (MQ=255)
                                                                gccttaaaaaccagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTCCGATCATCACTACGTTCATGTCGGTCTCTGCgg                                   <  1:1192154‑M2/65‑1 (MQ=255)
                                                                  cttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGc                                  <  2:248289‑M2/66‑1 (MQ=255)
                                                                   ttaaaaatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGc                                  <  1:580573‑M2/66‑1 (MQ=255)
                                                                    taaaaatcagtttaccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCaga                               >  1:1250887‑M2/32‑100 (MQ=255)
                                                                        aatcagtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCCCCCGTCTTCGATCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCt                           >  2:173527‑M2/28‑100 (MQ=255)
                                                                          tcagtttgccagcgccgccttgtgcCATCTCCTTCACTTCAATGATGCGCCCGGCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTc                         <  2:581231‑M2/75‑1 (MQ=255)
                                                                            agtttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCaa                       <  1:1123659‑M2/77‑1 (MQ=255)
                                                                              tttgccagcgccgccttctgcCGTCCCCTGCACTTCAATGTTGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACg                     <  1:90286‑M2/79‑1 (MQ=255)
                                                                              cgatctagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACg                     <  1:262161‑M2/79‑1 (MQ=255)
                                                                               ttgccagtgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGt                    <  1:1266549‑M2/80‑1 (MQ=255)
                                                                                  ccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTAtt                 >  2:1691507‑M2/18‑100 (MQ=255)
                                                                                  ccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTAtt                 >  2:1337425‑M2/18‑100 (MQ=255)
                                                                                  ccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTAtt                 >  2:1337357‑M2/18‑100 (MQ=255)
                                                                                  ccagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTAtt                 >  1:277197‑M2/18‑100 (MQ=255)
                                                                                   cagcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTATCTGCGGCAGAGTCTTCAACGTATTc                >  2:151200‑M2/17‑100 (MQ=255)
                                                                                    agcgccgccttctgcCGTCCTCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTcc               <  2:12317‑M2/85‑1 (MQ=255)
                                                                                    agcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCttcaacgagatcg               >  2:262162‑M2/16‑94 (MQ=255)
                                                                                    agcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTcc               <  1:621468‑M2/85‑1 (MQ=255)
                                                                                    agcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTcc               <  2:246865‑M2/85‑1 (MQ=255)
                                                                                    agcgccgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTcc               <  2:762586‑M2/85‑1 (MQ=255)
                                                                                         cgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATc          >  2:647143‑M2/11‑100 (MQ=255)
                                                                                         cgccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATc          <  1:1458614‑M2/90‑1 (MQ=255)
                                                                                          gccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCg         >  1:713150‑M2/10‑100 (MQ=255)
                                                                                           ccttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGc        <  1:1660434‑M2/92‑1 (MQ=255)
                                                                                            cttctgcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCa       <  1:151200‑M2/93‑1 (MQ=255)
                                                                                                 gcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCg  >  1:158999‑M2/3‑100 (MQ=255)
                                                                                                 gcCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCg  >  1:1263353‑M2/3‑100 (MQ=255)
                                                                                                   |                                                                                                 
CCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGCGGCAGAGTCTTCAACGTATTCCAGATCGCAAACCG  >  NC_000913/3815842‑3816038

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: