| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,984,734 | G→A | G112G (GGC→GGT) | araG ← | L‑arabinose ABC transporter ATPase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,984,734 | 0 | G | A | 96.2% | 245.1 / 0.1 | 80 | G112G (GGC→GGT) | araG | L‑arabinose ABC transporter ATPase |
| Reads supporting (aligned to +/- strand): ref base G (2/1); new base A (43/32); total (45/35) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.83e-01 | |||||||||||
GAGATATTTCAGCGGCGTGTCCGGGTCAATATCCATACCAAGATGTTTAAGTTGTAAACCCGCCTCATAATTCAGCAATGAGCGATTCACAATGCCGCCTTTATGCGGCAGCTGGCCGAGATAGATGTTTTCCGCGACGGTCATTTCCGGCACGAGATGCAGTTCCTGGTAAATAATCGCCACGCCCGCG > NC_000913/1984638‑1984827 | gagaTATTTCAGCGGCGTGTCCGGGTCAATATCCATACCAAGATGTTTAAGTTGTAAACCCGCCTCATAATTCAGCAATGAGCGATTCACAATGCCACCt < 2:634830/100‑1 (MQ=255)gagaTATTTCAGCGGCGTGTCCGGGTAAATATCCATACCAAGATGTTTAAGTTGTAAACCCGCCTCATAATTCAGCAATGAACGATTCACAATGCCACCt > 1:1589702/1‑100 (MQ=255) agaTATTTCAGCTGCGTGTCCGGGTCAATATCCATACCAACATGTTTAAGTTGTAAACCCGCCTCATAATTCAGCAATGAGCGATTCACAATGCCACCtt < 1:321514/100‑1 (MQ=255) gaTATTTCAGCGGCGTGTCCGGGTCAATATCCATACCAAGATGTTTAAGTTGTAAACCCGCCTCTTAATTCAGCAGTGAGCGATTCACAATGGCACCtt < 1:348756/99‑1 (MQ=255) gaTATTTCAGCGGCGTGTCCGGGTCAATATCCATACCAAGATGTTTAAGTTGTAAACCCGCCTCATAATTCAGCAATGAGCGATTCACAATGCCACCttt > 1:452295/1‑100 (MQ=255) atctttCAGCGGCGTGTCCAAGTCAATATCCATACTAAGATGTTTAAGTAGTAAACCCGCCACATAATTCAGCAATGAGCGATTTACAAAGCCACCTTTa > 1:1243630/4‑100 (MQ=255) atatTTCAGCGGCGTGTCCGGGTCAATATCCATACCAAGATGTTTAAGTTGTAAACCCGCCTCATAATTCAGCAATGAGCGATTCACAATGCCACCTTTa < 2:1360196/100‑1 (MQ=255) atTTCAGCGGCGTGTCCGTGTCAATATCCATACCAATATTTTTTTTTTTTTATCCCGCCTCATAATTCAGCAATGAGCGATTCACAATGCCACCTTTATg < 2:8509/100‑1 (MQ=255) atTTCAGCGGCGTGTCCGGGTCAATATCCATACCAAGATGTTTAAGTTGTAAACCCGCCTCATAATTCAGCAATGAGCGATTCACAATGCCACCTTTATg < 2:955516/100‑1 (MQ=255) atTTCAGCGGCGTGTCCGGGTCAATATCCATACCAAGATGTTTAAGTTGTAAACCCGCCTCATAATTCAGCAATGAGCGATTCACAATGCCACCTTTATg > 2:477847/1‑100 (MQ=255) atTTCAGCGGCGTGTCCGGGTCAATATCCATACCAAGATGTTTAAGTTGTAAACCCGCCTCATAATTCAGCAATGAGCGATTCACAATGCCACCTTTATg > 1:1445015/1‑100 (MQ=255) aGCGGCGTGTCCGGGTCAATATCCATACCAAGATGTTTAAGTTGTAAACCCGCCTCATAATTCAGCAATGAGCGATTCACAATGCCACCTTTATGCGGc < 1:1205299/99‑1 (MQ=255) ggcgTGTCCGGGTCAATATCCATACCAAGATGTTTAAGTTGTAAACCCGCCTCATAATTCAGCAATGAGCGATTCACAATGCAACCTTTATGCGGAAGCt > 2:1414548/1‑100 (MQ=255) gcgTGTCCGGGTCAATATACATACCAAGATGTTTAAGTTGTAAACCCGCCTCCTAATTCAGCAATTAGCGATTCACAATGCAACCTTTATGCGGAAg > 2:736091/1‑97 (MQ=255) gtgtCCGTGTCAATATCCATACCAAGATGTTTAAGTTGTAAACCCGCCTCATAATTCAGCAATGAGCGATTCACAATGCCACCTTTATGCGGCAg < 2:1017073/95‑1 (MQ=255) gtgtCCGGGTCAATATCCATACCAAGATGTTTAAGTTGTAAACCCGCCTCATAATTCAGCAATGAGCGATTCACAATGCCACCTTTATGCGGCAGCTGGc < 2:543635/100‑1 (MQ=255) tgtCCGGGTCAATATCCATACCAAGATGTTTAAGTTGTAAACCCGCCTCATAATTCAGCAATGAGCGATTCACAATGCCACCTTTATGCGGCAGCTGGcc > 1:865223/1‑100 (MQ=255) gtCCGGGTCAATATCCATACCAAGATGTTTAAGTTGTAAACCCGCCTCATAATTCAGCAATGAGCGATTCACAATGCCACCTTTATGCGGCAGCTGGCCg < 1:981474/100‑1 (MQ=255) gtCCGGGTCAATATCCATACCAAGATGTTTAAGTTGTAAACCCGCCTCATAATTCAGCAATGAGCGATTCACAATGCCACCTTTATGCGGCAGCTGGCCg < 1:1168876/100‑1 (MQ=255) ccGGGTCAATATCCATACCAAGATGTTTAAGTTGTAAACCCGCCTCATAATTCAGCCATGAGCGATTCACAATGCCACCTTTATGCGGCAGCTGGCCgag > 2:1710095/1‑100 (MQ=255) ccGGGTCAATATCCATACCAAGATGTTTAAGTTGTAAACCCGCCTCATAATTCAGCAATGAGCGATTCACAATGCCACCTTTATGCGGCAGCTGGCCgag < 1:405272/100‑1 (MQ=255) ccGGGTCAATATCCATACCAAGATGTTTAAGTTGTAAACCCGCCTCATAATTCAGCAATGAGCGATTCACAATGCCACCTTTATGCGGCAGCTGGCCga > 2:355444/1‑99 (MQ=255) cGGGTCAATATCCATACCAAGATGTTTAAGTTGTAAACCCGCCTCATAATTCAGCAATGAGCGATTCACAATGCCACCTTTATGCGGCAGTTGGCCgaga < 2:1408328/100‑1 (MQ=255) cGGGTCAATATCCATACCAAGATGTTTAAGTTGTAAACCCGCCTCATAATTCAGCAATGAGCGATTCACAATGCCACCTTTATGCGGCAGCTGGCCgag > 1:1493144/1‑99 (MQ=255) ggTCAATATCCATACCAAGATGTTTAAGTTGTAAACCCGCCTCATAATTCAGCAATGAGCGATTCACAATGCCACCTTTATGCGGCAGCTGGCCGagata > 1:1585115/1‑100 (MQ=255) ggTCAATATCCATACCAAGATGTTTAAGTTGTAAACCCGCCTCATAATTCAGCAATGAGCGATTCACAATGCCAACTTTATGCGGCAGATgg > 1:565763/1‑92 (MQ=255) gTCAATATCCATACCAAGATGTTTAAGTTGTAAACCCGCCTCATAATTCAGCAATGAGCGATTCACAATGCCACCTTTATGCGGCAGCTGGCCGagatag < 2:765010/100‑1 (MQ=255) cAATATCCATACCAAGATGTTTAAGTTGTAAACCCGCCTCATAATTCAGCAATGAGCGATTCACAATGCCACCTTTATGCGGCAGCTGGCCGagatagat > 1:2037/1‑100 (MQ=255) atatCCATACCAAGATGTTTAAGTTGTAAACCCGCCTCATAATTCAGCAATGAGCGATTCACAATGCCACCTTTATGCGGCAGCTGGCCGAGATAGATGt > 1:1031716/1‑100 (MQ=255) tatCCATACCAAGATGTTTAAGTTGTAAACCCGCCTCATAATTCAGCAATGAGCGATTCACAATGCCACCTTTATGCGGCAGCTGGCCGAGATAGATGtt < 2:706580/100‑1 (MQ=255) tatCCATACCAAGATGTTTAAGTTGTAAACCCGCCTCATAATTCAGCAATGAGCGATTCACAATGCCACCTTTATGCGGCAGCTGGCCGAGATAGATGtt < 2:465804/100‑1 (MQ=255) atCCATACCAAGATGTTTAAGTTGTAAACCCGCCTCATAATTCAGCAATGAGCGATTCACAATGCCACCTTTATGCGGCAGCTGGCCGAGATAGATGttt > 1:476324/1‑100 (MQ=255) tCCATACCAAGATGTTTAAGTTGTAAACCCGCCTCATAATTCAGCAATGAGCGATTCACACTGCCACCTTTATGCGGCAGCTGGCCGAGATAGATGtttt > 1:343116/1‑100 (MQ=255) ccATACCAAGATGTTTAAGTTGTAATCCCGCCTCATAATTCAGCAATGAGCGATTCACAATGCCACCTTTATGCGGCAGCTGGCCGAGATAGATGTTTTc < 1:881731/100‑1 (MQ=255) cATACCAAGATGTTTAAGTTGTAAACCCGCCTCATAATTCAGCAATTAGCGATTCACAATGCCACCTTTATGCGGCAGCTGGCCGAGATAGATGTTTTcc > 1:607813/1‑100 (MQ=255) cATACCAAGATGTTTAAGTTGTAAACCCGCCTCATAATTCAGCAATGAGCGATTCACAATGCCACCTTTATGCGGCAGCTGGCCGAGATAGATGTTTTcc > 2:651359/1‑100 (MQ=255) tACCAAGATGTTTAAGTTGTAAACCCGCCTCATAATTCAGCAATGAGCGATTCACAATGCCACCTTTATGCGGCAGCTGGCCGAGATAGATGTTTTCcgc < 2:764381/100‑1 (MQ=255) ccAAGATGTTTAAGTTGTAAACCCGCCTCATAATTCAGCAATGAGCGATTCACAATGCCACCTTTATGCGGCAGCTGGCCGAGATAGATGTTTTCCGCGa > 1:221362/1‑100 (MQ=255) cAAGATGTTTAAGTTGTAAACCCGCCTCATAATTCAGCAATGAGCGATTCACAATGCCTCCTTTATGCGGCAGCTGGCCGAGATAGATGTGTTCCGCGAc < 1:1701012/100‑1 (MQ=255) cAAGATGTTTAAGTTGTAAACCCGCCTCATAATTCAGCAATGAGCGATTCACAATGCCACCTTTATGCGGCAGCTGGCCGAGATAGATGTTTTCCGCGAc > 2:407993/1‑100 (MQ=255) cAAGATGTTTAAGTTGTAAACCCGCCTCATAATTCAGCAATGAGCGATTCACAATGCCACCTTTATGCGGCAGCTGGCCGAGATAGATGTTTTCCGCGAc > 2:408100/1‑100 (MQ=255) cAAGATGTTTAAGTTGTAAACCCGCCTCATAATTCAGCAATGAGCGATTCACAATGCCACCTTTATGCGGCAGCTGGCCGAGATAGATGTTTTCCGCGAc > 1:932205/1‑100 (MQ=255) tGTTTAAGTTGTAAACCCGCCTCATAATTCAGCAATGAGCGATTCACAATGCCGCCTTTATGCGGCAGCTGGCCGAGATAGATGTTTTCCGCGACGGTCa > 2:1270309/1‑100 (MQ=255) tttAAGTTGTAAACCCGCCTCATAATTCAGCAATGAGCGATTCACAATGCCGCCTTTATGCGGCAGCTGGCCGAGATAGATGTTTTCCGCGACGGTCAtt > 1:136658/1‑100 (MQ=255) tttAAGTTGTAAACCCGCCTCATAATTCAGCAATGAGCGATTCACAATGCCACCTTTATGCGGCAGCTGGCCGAGATAGATGTTTTCCGCGACGGTCAtt > 2:43727/1‑100 (MQ=255) tAAGTTGTAAACCCGCCTCATAATTCAGCAATGAGCGATTCACAATGCCACCTTTATGCGGCAGCTGGCCGAGATAGATGTTTTCTGCGACGGTCATTTc > 1:625646/1‑100 (MQ=255) aaGTTGTAAACCCGCCTCATAATTCAGCAATAAGCGATTCACAATGCCACCTTTATGCGGCAGCTGGCCGAGATAGATGTTTTCCGCGACGGTCATTTcc > 1:145028/1‑100 (MQ=255) aGTTGTAAACCCGCCTCATAATTCAGCAATGAGCGATTCACAATGCCACCTTTATGCGGCAGCTGGCCGAGATAGATGTTTTCCGCGACGGTCATTTCCg > 2:1775673/1‑100 (MQ=255) gTTGTAAACCCGCCTCATAATTCAGCAATGAGCGATTCACAATGCCACCTTTATGCGGCAGCTGGCCGAGATAGATGTTTTCCGCGACGGTCATTTCCgg < 2:1461166/100‑1 (MQ=255) ttGTAAACCCGCCTCATAATTCAGCAATGAGCGATTCACAATGCCACCTTTATGCGGCAGCTGGCCGAGATAGATGTTTTCCGCGACGGTCATTTCCGGc < 1:475681/100‑1 (MQ=255) aaaCCCGCCTTATAATTCATCAATGAGCGATTCACAATGCCACCTTTATGCGGCAGCTGGCCGAGATAGATGTTTTCCGCGACGGTCATTTCCGGCACg > 1:1097614/1‑99 (MQ=255) aaaCCCGCCTCATAATTCAGCAATGAGCGATTCACAATGCCGCCTTTATGCGGCAGCTGGCCGAGATAGATGTTTTCCGCGACGGTCATTTCCGGCACga < 1:1270298/100‑1 (MQ=255) aaCCCGCCTCATAATTCAGCAATGAGCGATTCACAATGCCACCTTTATGCGGCAGCTGGCCGAGATAGATGTTTTCCGCGACGGTCATTTCCGGCACgag < 2:1031726/100‑1 (MQ=255) aaCCCGCCTCATAATTCAGCAATGAGCGATTCACAATGCCACCTTTATGCGGCAGCTGGCCGAGATAGATGTTTTCCGCGACGGTCATTTCCGGCACgag > 1:867549/1‑100 (MQ=255) cGCCTCATAATTCAGCAATGAGCGATTCACAATGCCACCTTTATGCGGCAGCTGGCCGAGATAGATGTTTTCCGCGACGGTCATTTCCGGCACGAGATGc < 1:1069095/100‑1 (MQ=255) ccTCATAATTCAGCAATGAGCGATTCACAATGCCACCTTTATGCGGCAGCTGGCCGAGATAGATGTTTTCCGCGACGGTCATTTCCGGCACgag < 2:637755/94‑1 (MQ=255) ccTCATAATTCAGCAATGAGCGATTCACAATGCCACCTTTATGCGGCAGCTGGCCGAGATAGATGTTTTCCGCGACGGTCATTTCCGGCACGAGATGCAg < 2:1296727/100‑1 (MQ=255) tCATAATTCAGCAATGAGCGATTCACAATGCCACCTTTATGCGGCAGCTGGCCGAGATAGATGTTTTCCGCGACGGTCATTTCCGGCACGAGATGCAGtt < 2:867555/100‑1 (MQ=255) cATAATTCAGCAATGAGCGATTCACAATGCCACCTTTATGCGGCAGCTGGCCGAGATAGATGTTTTCCGCGACGGTCATTTCCGGCACGAGATGCAGTTc > 1:1737164/1‑100 (MQ=255) cATAATTCAGCAATGAGCGATTCACAATGCCACCTTTATGCGGCAGCTGGCCGAGATAGATGTTTTCCGCGACGGTCATTTCCGGCACGAGATGCAGTTc > 1:1263203/1‑100 (MQ=255) cATAATTCAGCAATGAGCGATTCACAATGCCACCTTTATGCGGCAGCTGGCCGAGATAGATGTTTTCCGCGACGGTCATTTCCGGCACGAGATGCAGTTc < 2:452297/100‑1 (MQ=255) cATAATTCAGCAATGAGCGATTCACAATGCCACCTTTATGCGGCAGCTGGCCGAGATAGATGTTTTCCGCGACGGTCATTTCCGGCACGAGATGCAGTTc > 1:554830/1‑100 (MQ=255) tAATTCAGCAATGAGCGATTCACAATGCCACCTTTATGCGGCAGCTGGCCGAGATAGATGTTTTCCGCGACGGTCATTTCCGGCACGAGATGCAGTTcc > 1:1311708/1‑99 (MQ=255) tAATTCAGCAATGAGCGATTCACAATGCCACCTTTATGCGGCAGCTGGCCGAGATAGATGTTTTCCGCGACGGTCATTTCCGGCACGAGATGCAGTTCCt > 2:53418/1‑100 (MQ=255) aaTTCAGCAATGAGCGATTCACAATGCCACCTTTATGCGGCAGCTGGCCGAGATAGATGTTTTCCGCGACGGTCATTTCCGGCACGAGATGCAGTTCCt > 2:806030/1‑99 (MQ=255) aaTTCAGCAATGAGCGATTCACAATGCCACCGTTATGCGGCAGCTGGCCGAGATAGATGTTTTCCGCGACGGTCATTTCCGGCACGAGATGCAGTTCCTg < 1:1224771/100‑1 (MQ=255) aTTCAGCAATGAGCGATTCACAATGCCACCTTTATGCGGCAGCTGGCCGAGATAGATGTTTTCCGCGACGGTCATTTCCGGCACGAGATGCAGTTCCTgg > 1:1514794/1‑100 (MQ=255) ttCAGCAATGAGCGATTCACAATGCCACCTTTATGCGGCAGCTGGCCGAGATAGATGTTTTCCGCGACGGTCATTTCCGGCACGATATGCAGTTCCTGGt < 1:553319/100‑1 (MQ=255) tCAGCAATGAGCGATTCACAATGCCACCTTTATGCGGCAGCTGGCCGAGATAGATGTTTTCCGCGACGGTCATTTCCGGCACGAGATGCAGTTCCTGGTa > 2:1123445/1‑100 (MQ=255) tCAGCAATGAGCGATTCACAATGCCACCTTTATGCGGCAGCTGGCCGAGATAGATGTTTTCCGCGACGGTCATTTCCGGCACGAGATGCAGTTCCTGGTa < 2:74130/100‑1 (MQ=255) tCAGCAATGAGCGATTCACAATGCCACCTTTATGCGGCAGCTGGCCGAGATAGATGTTTTCCGCGACGGTCATTTCCGGCACGAGATGCAGTTCCTGGTa > 1:199776/1‑100 (MQ=255) aGCAATGAGCGATTCACAATGCCACCTTTATGCGGCAGCTGGCCGAGATAGATGTTTTCCGCGACGGTCATTTCCGGCACGAGATGCAGTTCCTGGTaaa > 2:1597845/1‑100 (MQ=255) gCAATGAGCGATTCACAATGCCACCTTTATGCGGCAGCTGGCCGAGATAGATGTTTTCCGCGACGGTCATTTCCGGCACGAGATGCAGTTCCTGGTAaat > 2:1303052/1‑100 (MQ=255) gCAATGAGCGATTCACAATGCCACCTTTATGCGGCAGCTGGCCGAGATAGATGTTTTCCGCGACGGTCATTTCCGGCACGAGATGCAGTTCCTGGTAaat < 2:1247970/100‑1 (MQ=255) tGATCGATTTACAATGTCACCTTTATGCGGCAGCTGGCCGAGATAGATGTTTTCCGCGACGGTCATTTCCGGCACGAGATGCAGTTCCTGGTAaat < 2:1589713/96‑1 (MQ=255) tGAGCGATTAACAATGCCCCCTTTATGCGGCAGCTGGCCGAGATAGATGTTTTCTGCGACGGTCATTTTCGGCACGTGTTGCAGTTCCTGTTAaataa < 1:1243612/98‑1 (MQ=255) gAGCGATTCACAATGCCACCTTTATGCGGCAGCTGGCCGAGATAGATGTTTTCCGCGACGGTCATTTCCGGCACGAGATGCAGTTCCTGGTAAATAATCg > 2:208840/1‑100 (MQ=255) cGATTCACAATGCCACCTTTATGCGGCAGCTGGCCGAGATAGATGTTTTCCGCGACGGTCATTTCCGGCACGAGATGCAGTTCCTGGTAAATAATCGCCa > 1:357111/1‑100 (MQ=255) gcttCACAATGCCACCTTTATGCGGAAGCTGGGCGAGATAGATGGTTGCCGCGACGGTCATTTCCGGCACTAGATGCAGTTCCTCGTAAATAATCTCCAc > 1:148549/3‑100 (MQ=255) aaTGCCACCTTTATGCGGCAGCTGGCCTAGATAGATGTTTTCCGCGACGGTCATTTCCGGCACGAGATGCAGTTCCTGGTAAATAATCGCCACGCCcgcg < 2:428171/100‑1 (MQ=255) | GAGATATTTCAGCGGCGTGTCCGGGTCAATATCCATACCAAGATGTTTAAGTTGTAAACCCGCCTCATAATTCAGCAATGAGCGATTCACAATGCCGCCTTTATGCGGCAGCTGGCCGAGATAGATGTTTTCCGCGACGGTCATTTCCGGCACGAGATGCAGTTCCTGGTAAATAATCGCCACGCCCGCG > NC_000913/1984638‑1984827 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |