New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3488981	NA (NA)	7 (0.090)	9/166	NT	NA	coding (1200/1221 nt)	argD	bifunctional acetylornithine aminotransferase and succinyldiaminopimelate aminotransferase
	?	NC_000913	= 3488989	NA (NA)					coding (1192/1221 nt)	argD	bifunctional acetylornithine aminotransferase and succinyldiaminopimelate aminotransferase

GGATTCGAAGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCCCCAACCACCTTCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3488878‑3488981 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgccCACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGCAAAAGATGTCGGATGCGGCGTGAATGCCTTATCCGATGGTTTAGCCTGCATTA  <  NC_000913/3488989‑3488891                                                                                                                                                                                                             GGATTCGAAGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCCCCAACCACCTT                                                                                                         >  1:436733/1‑100  GATTCGAAGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCCCCAACCACCTTC                                                                                                        >  2:293028/1‑100  GATTCGAAGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCCCCAACCACCTTC                                                                                                        <  1:533295/100‑1   ATTCGAAGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCCCCAACCACCTTCG                                                                                                       >  2:1961805/1‑100   ATTCGAAGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCCCCAACCACCTTCG                                                                                                       <  2:1157547/100‑1   ATTCGAAGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCCCCAACCACCTTCG                                                                                                       <  1:1660513/100‑1   ATTCGAAGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCCCCAACCACCTTCG                                                                                                       <  1:1282357/100‑1     TCGAAGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCCCCAACCACCTTCGCC                                                                                                     <  1:752080/100‑1                     GGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCCCCAACCACCTTCGCCCACGCGGTGGCGAAGG                                                                                     <  1:650505/100‑1                       CTAAACCATCGGATCAGTGATTAACGCCGCATCCGACATCTTTTGCCTTATGCTTCGTATTTCCGCCCCAACCACCTTCGCCCACGCGGTGGCGAAGGT                                                                                    <  2:338339/99‑1                                                        CGACATCTTTTGCCTGATGCTTCGTATTTACGCCCCAACCACCTTCGCCACCGCGTTTGCGAAGGTGGTTGAAGCGTAAATACGAAGCATCAGGCAAAAG                                                  >  1:600149/1‑100                                                                                 ATTTACGCCCCAACCACCTTCGCCACCGCGTGGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGCAAAAGATGTCGGATGCGGCGTGAATGCCTT                         >  2:1158496/1‑100                                                                                         CCCAACCACCTTCGCCACCGCGTGGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGCAAAAGATGTCGGATGCGGCGTGAATGCCTTATCCGATG                 >  1:691528/1‑100                                                                                            AACCACCTTCGCCACCGCGTGGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGCAAAAGATGTCGGATGCGGCGTGAATGCCTTATCCGATGGTT              >  1:1298712/1‑100                                                                                             ACCACCTTCGCCACCGCGTGGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGCAAAAGATGTCGGATGCGGCGTGAATGCCTTATCCGATGGTTT             >  1:1194783/1‑100                                                                                              CCACCTTCGCCACCGCGTGGACGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGCAAAAGATGTCGGATGCGGCGTGAATGCCTTATCCGATGGTTTA            >  2:265099/1‑100                                                                                               CACCTTCGCCACCGCGTGGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGCAAAAGATGTCGGATGCGGCGTGAATGCCTTATCCGATGGTTTAG           >  2:829411/1‑100                                                                                                     CGCCCACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGCAAAAGATGTCGGATGCGGCGTGAATGCCTTATCCGATGGTTTAGCCTGCA     >  1:508068/1‑100                                                                                                     CGCCCACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGCAAAAGATGTCGGATGCGGCGTGAATGCCTTATCCGATGGTTTAGCCTGCA     <  1:425260/100‑1                                                                                                      GCCCACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGCAAAAGATGTCGGATGCGGCGTGAATGCCTTATCCGATGGTTTAGCCTGCAT    <  2:2247687/100‑1                                                                                                       CCCACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGCAAAAGATGTCGGATGCGGCGTGAATGCCTTATCCGATGGTTTAGCCTGCATT   >  1:702086/1‑100                                                                                                       CCCACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGCAAAAGATATCGGATGCGGCGTGAATGCCTTATCCGATGGTTTAGCCTGCAT    >  2:508522/1‑99                                                                                                        CCACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGCAAAAGATGTCGGATGCGGCGTGAATGCCTTATCCGATGGTTTAGCCTGCATTA  >  1:553892/1‑100                                                                                                        CCACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGCAAAAGATGTCGGATGCGGCGTGAATGCCTTATCCGATGGTTTAGCCTGCATT   <  2:1613541/99‑1                                                                                                                                                                                                             GGATTCGAAGGCGTAATGCAGGCTAAACCATCGGATAAGGCATTCACGCCGCATCCGACATCTTTTGCCTGATGCTTCGTATTTACGCCCCAACCACCTTCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3488878‑3488981 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgccCACGCGGTGGCGAAGGTGGTTGGGGCGTAAATACGAAGCATCAGGCAAAAGATGTCGGATGCGGCGTGAATGCCTTATCCGATGGTTTAGCCTGCATTA  <  NC_000913/3488989‑3488891

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.