New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3680409	NA (NA)	3 (0.040)	3/160	NT	NA	noncoding (43/76 nt)	REP265 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP265 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913	= 3680441	NA (NA)					noncoding (75/76 nt)	REP265 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP265 (repetitive extragenic palindromic) element; contains 2 REP sequences

CGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATAcctgatggt‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3680312‑3680409 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCTGATGGTGATGAGTTAGCACAACCATCAGGTATTTATGGATGAGCTGGATAGAGGGGTAACACTTTATCCAGCCTTTTGCATATGCTGCGTTTACGCTGGCATCGC  <  NC_000913/3680441‑3680334                                                                                                                                                                                                                CGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACC                                                                                                            <  1:1591344/100‑1     GCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGA                                                                                                         <  2:1483183/99‑1     GCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCACAAATACCTGAT                                                                                                        >  2:1035519/1‑100      CGATTATCTCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATG                                                                                                       <  2:1978580/100‑1      CGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAACGGCTGGATAACGTGTTACCCCACTATCCAGCTCATCCATAAATACCTGATG                                                                                                       >  1:553612/1‑100      CGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATG                                                                                                       <  2:1195391/100‑1       GATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGG                                                                                                      <  1:740109/100‑1       GATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGG                                                                                                      <  1:1044478/100‑1                               AGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTGATGAGTTAGCACAACCATCAGG                                                                              <  1:1447390/100‑1                                       aGCAGCATATGCAAAAGGCTGGATAGAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTGATGAGTTAGCACAACCATCAGGTATTTATG                                                                      <  1:2072125/99‑1                                         CAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTGATGAGTTAGCACAACCATCAGGTATTTATGGA                                                                    <  1:1031207/100‑1                                                                                                   CCTGATGGTGATGAGTTAGCACAACCATCAGGTATTTATGGATGAGCTGGATAGAGGGGTAACACTTTATCCCGCCTTTTGCATATGCTGCGTTTACGCT          >  1:1200493/1‑100                                                                                                   CCTGATGGTGATGAGTTAGCACAACCATCAGGTATTTATGGATGAGCTGGATAGAGGGGTAACACTTTATCCAGCCTTTTGCATATGCTGCGTTTACGCT          >  2:1648447/1‑100                                                                                                    CTGATGGTGATGAGTTAGCACAACCATCAGGTATTTATGGATGAGCTGGATAGAGGGGTAACACTTTATCCAGCCTTTTGCATATGCTGCGTTTACGCTG         <  1:28340/100‑1                                                                                                    CTGATGGTGATGAGTTAGCACAACCATCAGGTATTTATGGATGAGCTGGATAGAGGGGTAACACTTTATCCAGCCTTTTGCATATGCTGCGTTTACGCTG         >  2:284993/1‑100                                                                                                    CTGATGGTGATGAGTTAGCACAACCATCAGGTATTTATGGATGAGCTGGATAGAGGGGTAACACTTTATCCAGCCTTTTGCATATGCTGCGTTTACGCTG         <  2:1081647/100‑1                                                                                                     TGATGGTGATGAGTTAGCACAACCATCAGGTATTTATGGATGAGCTGGATAGAGGGGTAACACTTTATCCAGCCTTTTGCATATGCTGCGTTTACGCTGG        <  2:1106106/100‑1                                                                                                      GATGGTGATGAGTTAGCACAACCATCAGGTATTTATGGATGAGCTGGATAGAGGGGTAACACTTTATCCAGCCTTTTGCATATGCTGCGTTTACGCTGGC       <  2:535536/100‑1                                                                                                       ATGGTGATGAGTTAGCACAACCATCAGGTATTTATGGATGAGCTGGATAGAGGGGTAACACTTTATCCAGCCTTTTGCATATGCTGCGTTTACGCTGGCA      <  2:1065723/100‑1                                                                                                       ATGGTGATGAGTTAGCACAACCATCAGATATTTATGGATGAGCTGGCTAGAGGGGTAACACTTTATCCAGCCTTTTGCATATGCTGCGTTTACGCTGGCA      >  2:262168/1‑100                                                                                                         GGTGATGAGTTAGCACAACCATCAGGTATTTATGGATGAGCTGGATAGAGGGGTAACACTTTATCCAGCCTTTTGCATATGCTGCGTTTACGCTGGCATC    >  2:23288/1‑100                                                                                                           TGATGAGTTAGCACAACCATCAGGTATTTATGGATGAGCTGGATAGAGGGGTAACACTTTATCCAGCCTTTTGCATATGCTGCGTTTACGCTGGCATCGC  >  2:1699757/1‑100                                                                                                           TGATGAGTTAGCACAACCATCAGGTATTTATGGATGAGCTGGATAGAGGGGTAACACTTTATCCAGCCTTTTGCATATGCTGCGTTTACGCTGGCATCGC  >  1:1943532/1‑100                                                                                                                                                                                                                CGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATAcctgatggt‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3680312‑3680409 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CCTGATGGTGATGAGTTAGCACAACCATCAGGTATTTATGGATGAGCTGGATAGAGGGGTAACACTTTATCCAGCCTTTTGCATATGCTGCGTTTACGCTGGCATCGC  <  NC_000913/3680441‑3680334

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.