New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4326250	NA (NA)	6 (0.080)	4/164	NT	NA	noncoding (449/583 nt)	REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences	REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences
	?	NC_000913	= 4326380	NA (NA)					noncoding (579/583 nt)	REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences	REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences

CCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGT‑T‑gccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4326152‑4326250 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATAAGGCGCTCGCGCCGCATCCGGCAACGGTGC  <  NC_000913/4326380‑4326343                                                                                                                                             CCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGT‑T‑G                                       <  1:1283975/100‑1   GGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGT‑T‑GCC                                     <  1:1914487/100‑1   GGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGT‑T‑GCC                                     >  1:2063480/1‑100    GATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGT‑T‑GCCG                                    <  1:1209421/100‑1    GATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGT‑T‑GCCG                                    >  2:1551059/1‑100    GATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGT‑T‑GCCG                                    <  2:1309073/100‑1    GATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGT‑T‑GCCG                                    <  1:950306/100‑1    GATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGT‑T‑GCCG                                    <  1:728135/100‑1    GATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGT‑T‑GCCG                                    <  1:1004378/100‑1      TGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGT‑T‑GCCGGA                                  <  1:175266/100‑1       GCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGT‑T‑GCCGGAT                                 >  1:445560/1‑100       GCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGT‑T‑GCCGGAT                                 <  1:387056/100‑1       GCGGCGTAAACGCCTTATCCGGCCTACGGAGGGAGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGT‑T‑GCCGGA                                  >  2:92395/1‑99           CGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCAACGG‑T‑GCCGactg                                <  1:1261826/97‑5                           GGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCAT‑T‑GCCGGATAAGGCGTTTACGCCGCATCC             <  1:1624010/100‑1                                   GAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCAT‑T‑GCCGGATAAGGCGTTTACGCCGCATCCGGCAATGG     <  2:1264439/100‑1                                   GAGGGGGGGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGT‑T‑GCCGGATAAGGCGTTTACGCCGCATCCGGC          <  1:146637/95‑1                                    AGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGTAG‑GCCGGATAAGGCGTTTACGCCGCATCCGGCAACGG     <  2:2064774/100‑1                                      GGTGCGGTAATTTGTAGGCCTGATAAGACTCTCAAGCGTCGCATCAGGCAGTCGGCACCGT‑T‑GCCGGATAAGGCGTTTACGCCGCATCCGGCAACGGTGC  <  2:694364/100‑1                                      GGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGT‑AGGCCGGATAAGGCGTTTACGCCGCATCCGGCAACGGTG   <  2:1313691/100‑1                                                                                                                                             CCGGATGCGGCGTAAACGCCTTATCCGGCCTACGGAGGGTGCGGGAATTTGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAGTCGGCACCGT‑T‑gccggat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4326152‑4326250 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGATAAGGCGCTCGCGCCGCATCCGGCAACGGTGC  <  NC_000913/4326380‑4326343

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.