| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 39151 = | NA (NA) | 4 (0.050) | 4/164 | NT | NA | noncoding (1/82 nt) | REP4 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP4 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 39181 = | NA (NA) | noncoding (31/82 nt) | REP4 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP4 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
GCAATACCGCTAAGTCCGTGCGCTGCCTGATGCGACGCTGATGCGTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAAGCGTTTACGCCGCATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/39256‑39151‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGC > NC_000913/39181‑39248 GCAATACCGCTAAGTCCGTGCGCTGCCTGATGCGACGCTGATGCGTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAAGCGTTTACGCCGCA > 1:1063863/1‑100 CAATACCGCTAAGTCCGTGCGCTGCCTGATGCGACGCTGATGCGTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAAGCGTTTACGCCGCA < 1:886220/99‑1 ATACCGCTAAGTCCGTGCGCTGCCTGATGCGACGCTGATGCGTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAAGCGTTTACGCCGCATCC > 1:1467216/1‑100 ATACCGCTAAGTCCGTGCGCTGCCTGATGCGACGCTGATGCGTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAAGCGTTTACGCCGCATCC > 1:757250/1‑100 TACCGCTAAGTCCGTGCGCTGCCTGATGCGACGCTGATGCGTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAAGAGTTTACGCCGCATCCG > 2:1311824/1‑100 TACCGCTAAGTCCGTGCGCTGCCTGATGCGACGCTGATGCGTCTTATCAGGCCTACCGGAGCACGAATGTAGGCCGGATAAAGCGTTTACGCCGCA > 2:1078973/1‑96 nCGCTAAGTCCGTGCGCTGCCTGATGCGACGCTGATGCGTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAAGCGTTTACGCCGCATCCGGC > 1:164927/2‑100 CCGCTAAGTCCGTGCGCTGCCTGATGCGACGCTGATGCGTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAAGCGTTTACGCCGCATCCGGC > 1:1405800/1‑100 CCGCTAAGTCCGTGCGCTGCCTGATGCGACGCTGATGCGTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAAGCGTTTACGCCGCATCCGGC < 2:1868454/100‑1 CCGCTAAGTCCGTGCGCTGCCTGATGCGACGCTGATGCGTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAAGCGTTTACGCCGCATCCGGC > 1:960200/1‑100 CCGCTAAGTCCGTGCGCTGCCTGATGCGACGCTGATGCGTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAAGCGTTTACGCCGCATCCGGC < 1:2172100/100‑1 CCGCTAAGTCCGTGCGCTGCCTGATGCGACGCTGATGCGTCTTATCAGGCCTACGGGAGCACGAATCTAGGCCGGATAAAGCGTTTACGCCGCATCCGGC > 2:848679/1‑100 CGCTAAGTCCGTTCGCTGCCTGATGCGACGCTGATGCGTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAAGCGTTTACGCCGCATCCGG > 2:689334/1‑98 CGCTAAGTCCGTGCGCTGCCTGATGCGACGCTGATGCGTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAAGCGTTTACGCCGCATCCGGC < 1:2028376/99‑1 AATGTAGGCCGGATAAAGCGTTTACGCCGCATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGAC > 1:2238327/1‑100 ATGTAGGCCGGATAAAGCGTTTACGCCGCATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACT > 2:346620/1‑100 TAGGCCGGATAAAGCGTTTACGCCGCATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAG > 1:294897/1‑100 AGGCCGGATAAAGCGTTTACGCCGCATCCGGCCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGC > 2:66651/1‑100 GCAATACCGCTAAGTCCGTGCGCTGCCTGATGCGACGCTGATGCGTCTTATCAGGCCTACGGGAGCACGAATGTAGGCCGGATAAAGCGTTTACGCCGCATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/39256‑39151‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcCTACATTCGTGCTCCCGTAGGCCTGATAAGACGCATCAGCGTCGCATCAGGCAGCGCACGGACTTAGC > NC_000913/39181‑39248 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |