New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	225277 =	NA (NA)	11 (0.140)	7/168	NT	NA	noncoding (1507/1542 nt)	rrsH	16S ribosomal RNA of rrnH operon
	?	NC_000913	225299 =	NA (NA)					noncoding (1529/1542 nt)	rrsH	16S ribosomal RNA of rrnH operon

GTAGAGGTTTTACTGCTCATTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/225380‑225277 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggttGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGTCTGAT‑GAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCAGGT  >  NC_000913/225299‑225397                                                                                                                                                                                                              GTAGAGGTTTTACTGCTCATTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTAC                                                                                                          <  1:803778/100‑1  TAGAGGTTTTACTGCTCATTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACG                                                                                                         >  2:936715/1‑100  TAGAGGTTTTACTGCTCATTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACG                                                                                                         >  2:223765/1‑100   AGAGGTTTTACTGCTCATTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGG                                                                                                        <  2:1666155/100‑1    GAGGTTTTACTGCTCATTTTCATCAGACCATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGT                                                                                                       <  2:1004284/100‑1     agggggTACTGCGCATTTTCATCAGACAATCTGTGTGAGCACTTCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGT                                                                                                       <  2:1779855/93‑1     AGGTTTTACTGCTCATTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTT                                                                                                      >  1:102960/1‑100           TACTGCTCATTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGTAGGGGAACCTGCGGTTGGATCA                                                                                                <  2:240543/100‑1                                                   AAGAACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGAAGTGCTCACAC                                                        >  1:1389893/1‑100                                                        CGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGA                                                     >  1:660702/1‑98                                                                  AGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTTGGATCACCTCCTTACCTTAAAGAAGCGTTCTTTGCAGTGCTCACACAGATTGTCTAATagg                                         >  2:651778/1‑97                                                                        GGAGGTGATCCAACCGCAGGTTCCCCTACGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATagaaagtga                                   >  2:1759528/1‑91                                                                              GATCCAACCGCAGGTTCCCCTACGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGTAGTGCTCACACAGATTGTCTGATAGAAAGTGAaaagca                             >  2:1778132/1‑94                                                                              GATCCAACCGCAGGTTCCCCTACGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGTCTGAT‑GAAAATGAGCAGTAA                            >  1:1179812/1‑100                                                                                 CCAACCGCAGGTTCCCCTACGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGTCTGAT‑GAAAATGAGCAGTAAAAC                         >  1:1002214/1‑100                                                                                  CAACCGCAGGTTCCCCTACGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGTCTGAT‑GAAAATGAGCATTAAAAC                         >  1:1909561/1‑99                                                                                   AACCGCAGGTTCCCCTACGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGTCTGAT‑GAAAATGAGCAGTAAAAC                         >  1:780665/1‑98                                                                                            TTCCCCTACGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGTCTGAT‑GAAAATGAGCAGTAAAACCTCTACAGGCT              <  2:1002212/100‑1                                                                                                    CGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGTCTGAT‑GAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTC      >  1:135951/1‑100                                                                                                    CGGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGTCTGAT‑GAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTC      >  1:1858521/1‑100                                                                                                     GGTTGGATCACCTCCTTACCTTAAAGAAGCTTACTTTGCAGTGCTCACACAGATTGTCTGAT‑GAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCA     <  2:769925/100‑1                                                                                                     GGTTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATGTTCTGAT‑GAAAATGAGCAGTAAAACCTCTACAGGCTTGT           <  2:1420391/94‑1                                                                                                       TTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGTCTGAT‑GAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCAGG   >  2:1320070/1‑100                                                                                                       TTGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGTCTGAT‑GAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCAGG   >  1:456060/1‑100                                                                                                        TGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGTCTGAT‑GAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCAGGT  <  2:1889184/100‑1                                                                                                                                                                                                              GTAGAGGTTTTACTGCTCATTTTCATCAGACAATCTGTGTGAGCACTGCAAAGTACGCTTCTTTAAGGTAAGGAGGTGATCCAACCGCAGGTTCCCCTACGGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/225380‑225277 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggttGGATCACCTCCTTACCTTAAAGAAGCGTACTTTGCAGTGCTCACACAGATTGTCTGAT‑GAAAATGAGCAGTAAAACCTCTACAGGCTTGTAGCTCAGGT  >  NC_000913/225299‑225397

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.