New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2139702 =	NA (NA)	7 (0.090)	6/164	NT	NA	noncoding (1/37 nt)	REP146 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP146 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913	2139735 =	NA (NA)					noncoding (34/37 nt)	REP146 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP146 (repetitive extragenic palindromic) element; contains 1 REP sequences

AGATTCCCGTAATGGCAAAGATGTGAAGAAGTTGCTGGAGAAGATGTAGGTTACCAGGTGACCAGTCCTGTAGGCCTGATAAGACGCGTAAAGCGTCGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2139807‑2139702 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCATTCAG  >  NC_000913/2139735‑2139833                                                                                                                                                                                                               AGATTCCCGTAATGGCAAAGAAGTGAAGAAGTTGATGGAGAAGATGTAGGTTACCAGGTGACCAGTCAAGTAGGCCTGATAAGACGCGTAAAGCGTCGCA                                                                                                           >  2:857750/1‑100  GATTCCCGTAATGGCAAAGATGTGAAGAAGTTGCTGGAGAAGATGTAGGTTACCAGGTGACCAGTCCTGTAGGCCTGATAAGACGCGTAAAGCGTCGCAT                                                                                                          <  1:1655842/100‑1    TTCCCGTAATGGCAAAGATGTGAAGAAGTTGCTGGAGAAGATGTAGGTTACCAGGTGACCAGTCCTGTAGGCCTGATAAGACGCGTAAAGCGTCGCATCA                                                                                                        >  2:2062682/1‑100    TTCCCGTAATGGCAAAGATGTGAAGAAGTTGCTGGAGAAGATGTAGGTTACCAGGTGACCAGTCCTGTAGGCCTGATAAGACGCGTAAAGCGTCGCATCA                                                                                                        <  1:581626/100‑1      CCCGTAATGGCAAAGATGTGAAGAAGTTGCTGGAGAAGATGTAGGTTACCAGGTGACCAGTCCTGTAGGCCTGATAAGACGCGTAAAGCGTCGCATCAGG                                                                                                      >  2:97978/1‑100      CCCGTAATGGCAAAGATGTGAAGAAGTTGCTGGAGAAGATGTAGGTTACCAGGTGACCAGTCCTGTAGGCCTGATAAGACGCGTAAAGCGTCGCATCAGG                                                                                                      >  1:77027/1‑100      CCCGTAATGGCAAAGATGTGAAGAAGTTGCTGGAGAAGATGTAGGTTACCAGGTGACCAGTCCTGTAGGCCTGATAAGACGCGTAAAGCGTCGCATCAGG                                                                                                      <  1:334643/100‑1      CCCGTAATGGCAAAGATGTGAAGAAGTTGCTGGAGAAGATGTAGGTTACCAGGTGACCAGTCCTGTAGGCCTGATAAGACGCGTAAAGCGTCGCATCAGG                                                                                                      <  1:2199788/100‑1                                                              CCAGTCCTGTAGGCCTGATAAGACGCGTAAAGCGTCGCATCAGGCGTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCT                                              >  2:1707351/1‑100                                                                        AGGCCTGATAAGACGCGTAAAGCGTCGCATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTAC                                    >  1:2173992/1‑100                                                                        AGGCCTGATAAGACGCGTAAAGCGTCGCATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTAC                                    >  1:1540854/1‑100                                                                          GCCTGATAAGACGCGTAAAGCGTCGCATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGG                                  >  2:732740/1‑100                                                                           CCTGATAAGACGCGTAAAGCGTCGCATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGG                                 >  1:400422/1‑100                                                                             TGATAAGACGCGTAAAGCGTCGCATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAA                               >  1:576367/1‑100                                                                                      GCGTAAAGCGTCGCATCAGGCGTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTC                      <  1:1707362/100‑1                                                                                                    nTCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTC        >  1:1551641/2‑100                                                                                                     TCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCAAGTCA       <  2:1772470/100‑1                                                                                                       AGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCATT     >  2:1703761/1‑100                                                                                                       AGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCATT     >  2:572299/1‑100                                                                                                       AGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCATT     >  2:595097/1‑100                                                                                                          CCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCATTCAG  <  1:2133287/100‑1                                                                                                                                                                                                               AGATTCCCGTAATGGCAAAGATGTGAAGAAGTTGCTGGAGAAGATGTAGGTTACCAGGTGACCAGTCCTGTAGGCCTGATAAGACGCGTAAAGCGTCGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2139807‑2139702 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCATTCAG  >  NC_000913/2139735‑2139833

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.