New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2430980	NA (NA)	8 (0.110)	6/164	NT	NA	noncoding (52/84 nt)	REP169 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP169 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913	= 2431012	NA (NA)					noncoding (84/84 nt)	REP169 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP169 (repetitive extragenic palindromic) element; contains 2 REP sequences

TTCAACGCCATCGACTTTTTATGCCTTTGCGGCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGgcctgat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2430882‑2430980 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGCAGGGGTAGAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACACGCATTGCCCGATGCCGCAAA  <  NC_000913/2431012‑2430907                                                                                                                                                                                                               TTCAACGCCATCGACTTTTTATGCCTTTGCGGCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGG                                                                                                           <  2:2121556/100‑1   CAACGCCATCGACTTTTTATGCCTTTGCGGCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCC                                                                                                         >  1:1473356/1‑100   CAACGCCATCGACTTTTTATGCCTTTGCGGCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCC                                                                                                         >  1:1656189/1‑100   CAACGCCATCGACTTTTTATGCCTTTGCGGCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCC                                                                                                         <  1:627316/100‑1      CGCCATCGACTTTTTATGCCTTTGCGGCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGTCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGA                                                                                                      <  2:1375796/100‑1      CGCCATCGACTTTTTATGCCTTTGCGGCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATTCGACCTACGGTTCTACCCCTGCGTAGGCCTGA                                                                                                      >  2:1894932/1‑100      CGCCATCGACTTTTTATGCCTTTGCGGCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGA                                                                                                      <  2:1679665/100‑1       GCCATCGACTTTTTATGTCTTTGCGGCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGAT                                                                                                     <  1:1419499/100‑1       GCCATCGACTTTTTATGCCTTTGCGGCATAGGGCAATGTGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGAT                                                                                                     <  2:1216444/100‑1                            TGCGGCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATGCGACGCTGGCGCGTCTTATC                                                                                <  1:198341/100‑1                             GCGGCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATGCGACGCTGGCGCGTCTTATCA                                                                               <  1:666694/100‑1                               GGCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATGCGACGCTGGCGCGTCTTATCAGG                                                                             <  1:325611/100‑1                               GGCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATGCGACGCTGGCGCGTCTTATCAGG                                                                             <  2:1002806/100‑1                                GCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATGCGACGCTGGCGCGTCTTATCAGGC                                                                            <  1:939657/100‑1                                 CATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATGCGACGCTGGCGCGTCTTATCAGGCC                                                                           <  2:1074298/100‑1                                      GGCAATGCGTGTCGGATGCCGCGTAAACGCCTTTTCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGC                                                                      <  2:719322/100‑1                                       GCAATGCGTGTCGGATGCGGCGTAAACGCCTTACCCGACCTACGGTTCTACCCCTGCGTAGGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGC                                                                      <  1:1403831/99‑1                                                                                                    GCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGCAGGGGTAGAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACACGCATTGCCCGATGC        >  1:1919461/1‑100                                                                                                    GCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGCAGGGGTAGAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACACGCATTGCCCGATGC        >  1:1395556/1‑100                                                                                                    GCCTGATGCGACGCTGGCGCGTCTTATCAGGCATACGCAGGGGTAGAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACACGCATTGCCCGATGC        >  1:2134500/1‑100                                                                                                     CCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGCAGGGGTAGAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACACGCATTGCCCGATGCC       >  1:1048966/1‑100                                                                                                      CTGATGCGACGCTGGCGTGTCTTATCAGGCCTACGCAGGGGTAGAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACACGCATTGCCCGATGCCG      <  1:1671516/100‑1                                                                                                      CTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGCAGGGGTAGAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACACGCATTGCCCGATGCCG      >  2:1702308/1‑100                                                                                                      CTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGCAGGGGTAGAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACACGCATTGCCCGATGCCG      <  2:800990/100‑1                                                                                                       TGATGCGACGCTGGGGCGTCTTATCAGGCCTACGCAGGGGTAGAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACACGCATTGCCCGATGCCG      <  2:253468/99‑1                                                                                                         ATGCGACGCTGGCGCGTCTTATCAGGCCTACGCAGGGGTAGAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACACGCATTGCCCGATGCCGCAA   >  1:1054496/1‑100                                                                                                          TGCGACGCTGGCGCGTCTTATCAGGCCTACGCAGGGGTAGAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACACGCATTGCCCGATGCCGCAAA  >  2:884547/1‑100                                                                                                                                                                                                               TTCAACGCCATCGACTTTTTATGCCTTTGCGGCATCGGGCAATGCGTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTACCCCTGCGTAGgcctgat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2430882‑2430980 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACGCAGGGGTAGAACCGTAGGTCGGATAAGGCGTTTACGCCGCATCCGACACGCATTGCCCGATGCCGCAAA  <  NC_000913/2431012‑2430907

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.