| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2726200 = | NA (NA) | 38 (0.500) | 9/166 | NT | NA | intergenic (‑12/+81) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon |
| ? | NC_000913 | 2726224 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon | |||||
TAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2726304‑2726200‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tctgatTTAATCTGTATCAGGCTGAAAATCTTCTCT‑C‑ATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAACG > NC_000913/2726224‑2726322 TAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGT > 2:226578/1‑100TAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGT > 2:1775657/1‑100TAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGT > 1:98701/1‑100 AATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTC > 2:2131492/1‑100 AATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTC > 2:1039975/1‑100 AATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTC < 1:862957/100‑1 AATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTC < 2:518361/100‑1 AATGAACCGCGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTC < 2:2159489/100‑1 ATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCT < 2:1822062/100‑1 ATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCT > 2:1351402/1‑100 ATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCT > 1:366634/1‑100 ATGAAACGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCT > 1:1340268/1‑100 TGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTG < 1:1152108/100‑1 TGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTG > 1:1606224/1‑100 TGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCT > 1:826433/1‑99 TGAACCGTGAGGCTTAACCTTAAAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTC > 2:1357038/1‑98 TGAGGCTTAAGCTTACAACGCCGAAGATGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGACCGCTTATGCGGTCTGATTTAA < 2:1290483/99‑1 CGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCT‑C‑ATCCGCCAA > 1:1024809/1‑100 GAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCT‑CAATCCGCCAAAACAc > 2:329977/1‑98 TTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCT‑CAATCCGCCAAAACACCTTCG > 1:12314/1‑97 TTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCT‑C‑ATCCGCCAAAACAGCTTCGGCGTTG > 1:1183126/1‑100 gcgTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCT‑CAATCCGCCAAAACAGCTTCGGCGTTGTA < 1:1284634/96‑1 GCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCT‑C‑ATCCGCCAAAACATCTTCGACTTTGTAA > 1:1991307/1‑99 CTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTGA‑ATCCGCCAAAACACCTTCGGCGTTGTAAGG > 2:1514389/1‑100 CTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAAAATCATCTCTGA‑ATCCGCCAAAACACCTTCGGCGTTGTAAGG > 2:1514582/1‑100 ACAGATTAAATCAGAACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCT‑CAATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAG > 2:2246556/1‑100 ACAGATTAAATCAGAACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCT‑C‑ATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGC > 2:1963767/1‑100 CAGATTAAATCAGAACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCT‑C‑ATCCGCCAAAACAACTTCGGCGTTGTAAGGTTAAGCC > 1:25829/1‑100 AGATTAAATCAGAACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCT‑CAATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCC > 2:414652/1‑100 AGATTAAATCAGAACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCT‑CAATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCC > 2:384751/1‑100 AGATTAAATCAGAACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCT‑C‑ATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCT > 1:348199/1‑100 AGATTAAATCAGAACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCT‑C‑ATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCT > 1:961990/1‑100 GATTCAATCAGAACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCT‑C‑ATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCTC > 2:574645/1‑100 GATTAAATCAGAACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCT‑CAATCCGCCAAAACACCTTCGGCGTTGTAAGGTTAAGCCT > 2:2039200/1‑100 GATTAAATCAGAACGCAGAAACGGTATGATTTAATCTGTATCAGGCTGAAAATCTTCTCT‑CAATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCT > 2:1939943/1‑100 TTAAATCAGAACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCT‑CAATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGACTCA > 1:1261444/1‑100 TTAAATCAGAACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCT‑C‑ATCCGCCAAAACATCTTCGGCGTTGTAAGGTTAAGCCTCAC > 1:954565/1‑100 AAATCAGAACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCT‑CAATCCGCCAAAACACCTTCGGCGTTGTAAGGTTAAGCCTCACG > 1:2121064/1‑100 AAATCAGAACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCT‑C‑ATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCTCACGG > 2:392635/1‑100 AAATCAGAACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCT‑C‑ATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCTCACGG > 2:1617823/1‑100 AAATCAGAACGCAGAAGCGGTCTGATTTAAGCTATATCAGGCTGAAAATCTTCTCT‑C‑ATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTCAGCCTCACGG > 2:1474446/1‑100 AATCAGAACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCT‑CAATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCTCACGG > 1:54490/1‑100 AATCAGAACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCT‑CAATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCTCACGG > 2:1419754/1‑100 AATCAGAACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCT‑CAATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCTCAC > 2:1546852/1‑98 AATCAGAACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCT‑CAATCCGCCAAAACACCTTCGGCGTTGTAAGGTTAAGCCTCA > 1:1986722/1‑97 AATCAGAACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCT‑C‑ATCCGCCAAAACATCTTCGGCGTTGTAAGGTTAAGCCTCACGG > 1:355714/1‑99 AATCAGAACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCT‑C‑ATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCTCACGGT > 1:1439177/1‑100 AATCAGAACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCT‑C‑ATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCTCACGGT > 2:1978924/1‑100 AATCAGAACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCT‑C‑ATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCTCACGGT > 2:1880945/1‑100 ATCAGAACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCT‑CAATCCGCCAAAACACCTTCGGCGTTGTAAGGTTAAGCCTCACGGT < 1:2039214/100‑1 ATCAGAACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCT‑CAATCCGCCAAAACACCTTCGGCGTTGTAAGGTTAAGCCTCACGGT > 1:379473/1‑100 AACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCT‑CAATCCGCTAAAACACCTTTGGCGTTGTAAGGTTAAGCCTCACGGTTCAgt < 1:1514399/100‑3 AACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCT‑CAATCCGCGAAAACACCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCAgt < 1:1514592/100‑3 ACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCT‑C‑ATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAG > 2:755981/1‑100 ACGCAGAAGCGGTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCT‑C‑ATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAG > 1:1685399/1‑100 CTGATTTAATCTGTATCAGGCTGAAAATCTTCTCT‑C‑ATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTC > 2:2158133/1‑100 CTGATTTAATCTGTATCAGGCTGAAAATCTTCTCT‑C‑ATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTC > 2:1323620/1‑100 CTGATTTAATCTGTATCAGGCTGAAAATCTTCTCT‑C‑ATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTC > 2:1585760/1‑100 CTGATTTAATCTGTATCAGGCTGAAAATCTTCTCT‑C‑ATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTC > 2:1585160/1‑100 TGATTTAATCTGTATCAGGCTGAAAATCTTCTCT‑C‑ATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCA > 2:2199898/1‑100 GATTTAATCTGTATCAGGCTGAAAATCTTCTCT‑C‑ATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAA > 2:59274/1‑100 GATTTAATCTGTATCAGGCTGAAAATCTTCTCT‑C‑ATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAA < 2:1319302/100‑1 GATTTAATCTGTATCAGGCTGAAAATCTTCTCT‑C‑ATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAA > 2:1544371/1‑100 GATTTAATCTGTATCAGGCTGAAAATCTTCTCT‑C‑ATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAA > 1:909823/1‑100 GATTTAATCTGTATCAGGCTGAAAATCTTCTCT‑C‑ATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAA > 1:1235197/1‑100 GATTTAATCTGTATCAGGCTGAAAATCTTCTCT‑C‑ATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAA > 1:1221372/1‑100 GATTTAATCTGTATCAGGCTGAAAATCTTCTCT‑C‑ATCCGCCAAAACAGCTTCGGCGTTGTAAGCTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAA > 1:1572622/1‑100 ATTTAATCTGTATCAGGCTGAAAATCTTCTCT‑C‑ATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAAC < 2:807870/100‑1 TTTAATCTGTATCAGGCTGAAAATCTTCTCT‑C‑ATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAACG < 1:727986/100‑1 TTTAATCTGTATCAGGCTGAAAATCTTCTCT‑C‑ATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAACG > 1:2093511/1‑100 TTTAATCTGTATCAGGCTGAAAATCTTCTCT‑C‑ATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAACG > 1:1777204/1‑100 TTTAATCTGTATCAGGCTGAAAATCTTCTCT‑C‑ATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCAGTTAGCTCAACt < 2:915407/100‑2 TTTAATCTGTATCAGGCTGAAAATCTTCTCT‑C‑ATCCGCCAAAACAGCTTCGGCGTTGTAAGGGTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAAC < 2:448379/99‑1 TAATGAACCGTGAGGCTTAACCTTACAACGCCGAAGCTGTTTTGGCGGATGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2726304‑2726200‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tctgatTTAATCTGTATCAGGCTGAAAATCTTCTCT‑C‑ATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAACG > NC_000913/2726224‑2726322 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |