New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_000913 | = 3423822 | 0 (0.000) | 20 (0.260) | 6/166 | NT | 100% | intergenic (‑35/+58) | rrfD/rrlD | 5S ribosomal RNA of rrnD operon/23S ribosomal RNA of rrnD operon |
? | NC_000913 | 4040506 = | NA (NA) | intergenic (+83/‑11) | rrlA/rrfA | 23S ribosomal RNA of rrnA operon/5S ribosomal RNA of rrnA operon |
ACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTATCAGACCGCTTCTGCGTTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAACG > NC_000913/3423723‑3423921 | aCGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTATCAGACCGCTTCTGCGTTCTGAT < 1:1503063‑M1/100‑1 (MQ=255) aCGGCGTTTCACTACTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTATCAGACCGCTTCTGCGTTCTGAT < 1:1301497‑M1/100‑1 (MQ=255) tttCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTATCAGAACGCAGAAGCGGTCTGATaaaaca < 2:2133248‑M1/100‑7 (MQ=255) tttCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTATCAGAACGCAGAAGCGGTCTGATaaaaca < 1:156480‑M1/100‑7 (MQ=255) ttCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTATCAGAACGCAGAAGCGGTCTGATaaaaca < 2:1819468‑M1/99‑7 (MQ=255) tCTGTTTTATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtga > 1:903495‑M1/1‑32 (MQ=255) cTGTTTTATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaa > 2:643330‑M1/1‑31 (MQ=255) cTGTTTTATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaa > 2:2117830‑M1/1‑31 (MQ=255) tGTTTTATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaa > 1:145451‑M1/1‑30 (MQ=255) tGTTTTATCAGACCGCTTCTGCGTTCTGATaaaaaagaatttgcctggcggcagtagagcggtggtcccaactgaccccatgcagaactaagaagtgaaa > 2:1509026‑M1/1‑30 (MQ=255) gTTTTATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaac > 1:1411123‑M1/1‑29 (MQ=255) gTTTTATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaac > 1:407289‑M1/1‑29 (MQ=255) gTTTTATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaac > 1:1382434‑M1/1‑29 (MQ=255) gTTTTATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaac > 1:1614548‑M1/1‑29 (MQ=255) gTTTTATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaacacaaaagtgaaac > 1:337838‑M1/1‑29 (MQ=255) ttttATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacg > 1:1700251‑M1/1‑28 (MQ=255) ttcatcaGACCGCTTCTGCGTTCTGATgaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgc > 1:116844‑M1/4‑27 (MQ=255) ttcatcaGACCGCTTCTGCGTTCTGATgaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgc > 2:841798‑M1/4‑27 (MQ=255) ttATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgcc > 2:649897‑M1/1‑26 (MQ=255) tATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccg > 1:1384040‑M1/1‑25 (MQ=255) tATCAGACCGCTTCTGCGATCTGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgcc > 2:455277‑M1/1‑25 (MQ=255) cTTCTGCGGTCTGATaaaacagaatttgcctggtggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgat > 2:1459181‑M1/1‑15 (MQ=255) tCTGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtg > 2:1034195‑M1/1‑6 (MQ=255) cTGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccctatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgg < 2:1238651‑M1/100‑96 (MQ=255) cTGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgg > 2:387554‑M1/1‑5 (MQ=255) cTGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtg > 1:1829980‑M1/1‑5 (MQ=255) tGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtggg > 1:1533261‑M1/1‑4 (MQ=255) tGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtggg > 2:1423697‑M1/1‑4 (MQ=255) tGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgg > 1:675322‑M1/1‑4 (MQ=255) gATaaaacagagtttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggcagtgtggg > 2:1722426‑M1/1‑3 (MQ=255) gATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgggg > 2:120908‑M1/1‑3 (MQ=255) gATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgggg > 1:1250531‑M1/1‑3 (MQ=255) gATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgggg < 2:760984‑M1/100‑98 (MQ=255) gATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgggg < 1:153745‑M1/100‑98 (MQ=255) gATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgggg < 1:162310‑M1/100‑98 (MQ=255) gATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgggg > 1:1681098‑M1/1‑3 (MQ=255) gATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgggg < 1:1716095‑M1/100‑98 (MQ=255) gATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgggg < 1:311833‑M1/100‑98 (MQ=255) gATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgggg < 1:313488‑M1/100‑98 (MQ=255) gATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgggg < 2:1883776‑M1/100‑98 (MQ=255) gATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgggg > 2:1687562‑M1/1‑3 (MQ=255) gATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgggg > 1:497854‑M1/1‑3 (MQ=255) gATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgggg < 1:57434‑M1/100‑98 (MQ=255) gATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgggg > 1:834427‑M1/1‑3 (MQ=255) gATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgggg > 1:834435‑M1/1‑3 (MQ=255) aTaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtggggt > 1:495728‑M1/1‑2 (MQ=255) taaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtggggtc > 2:1477116‑M1/1‑1 (MQ=255) taaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgggg > 2:1143574‑M1/1‑1 (MQ=255) | ACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTATCAGACCGCTTCTGCGTTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAACG > NC_000913/3423723‑3423921 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |