New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 34238220 (0.000)20 (0.260) 6/166 NT 100% intergenic (‑35/+58) rrfD/rrlD 5S ribosomal RNA of rrnD operon/23S ribosomal RNA of rrnD operon
?NC_000913 4040506 = NA (NA)intergenic (+83/‑11) rrlA/rrfA 23S ribosomal RNA of rrnA operon/5S ribosomal RNA of rrnA operon

ACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTATCAGACCGCTTCTGCGTTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAACG  >  NC_000913/3423723‑3423921
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aCGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTATCAGACCGCTTCTGCGTTCTGAT                                                                                                     <  1:1503063‑M1/100‑1 (MQ=255)
aCGGCGTTTCACTACTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTATCAGACCGCTTCTGCGTTCTGAT                                                                                                     <  1:1301497‑M1/100‑1 (MQ=255)
      tttCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTATCAGAACGCAGAAGCGGTCTGATaaaaca                                                                                               <  2:2133248‑M1/100‑7 (MQ=255)
      tttCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTATCAGAACGCAGAAGCGGTCTGATaaaaca                                                                                               <  1:156480‑M1/100‑7 (MQ=255)
       ttCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTATCAGAACGCAGAAGCGGTCTGATaaaaca                                                                                               <  2:1819468‑M1/99‑7 (MQ=255)
                                                                    tCTGTTTTATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtga                                 >  1:903495‑M1/1‑32 (MQ=255)
                                                                     cTGTTTTATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaa                                >  2:643330‑M1/1‑31 (MQ=255)
                                                                     cTGTTTTATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaa                                >  2:2117830‑M1/1‑31 (MQ=255)
                                                                      tGTTTTATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaa                               >  1:145451‑M1/1‑30 (MQ=255)
                                                                      tGTTTTATCAGACCGCTTCTGCGTTCTGATaaaaaagaatttgcctggcggcagtagagcggtggtcccaactgaccccatgcagaactaagaagtgaaa                               >  2:1509026‑M1/1‑30 (MQ=255)
                                                                       gTTTTATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaac                              >  1:1411123‑M1/1‑29 (MQ=255)
                                                                       gTTTTATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaac                              >  1:407289‑M1/1‑29 (MQ=255)
                                                                       gTTTTATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaac                              >  1:1382434‑M1/1‑29 (MQ=255)
                                                                       gTTTTATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaac                              >  1:1614548‑M1/1‑29 (MQ=255)
                                                                       gTTTTATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaacacaaaagtgaaac                              >  1:337838‑M1/1‑29 (MQ=255)
                                                                        ttttATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacg                             >  1:1700251‑M1/1‑28 (MQ=255)
                                                                         ttcatcaGACCGCTTCTGCGTTCTGATgaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgc                            >  1:116844‑M1/4‑27 (MQ=255)
                                                                         ttcatcaGACCGCTTCTGCGTTCTGATgaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgc                            >  2:841798‑M1/4‑27 (MQ=255)
                                                                          ttATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgcc                           >  2:649897‑M1/1‑26 (MQ=255)
                                                                           tATCAGACCGCTTCTGCGTTCTGATaaaacagaatttgcctggcggccgtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccg                          >  1:1384040‑M1/1‑25 (MQ=255)
                                                                           tATCAGACCGCTTCTGCGATCTGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgcc                           >  2:455277‑M1/1‑25 (MQ=255)
                                                                                     cTTCTGCGGTCTGATaaaacagaatttgcctggtggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgat                >  2:1459181‑M1/1‑15 (MQ=255)
                                                                                              tCTGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtg       >  2:1034195‑M1/1‑6 (MQ=255)
                                                                                               cTGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccctatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgg      <  2:1238651‑M1/100‑96 (MQ=255)
                                                                                               cTGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgg      >  2:387554‑M1/1‑5 (MQ=255)
                                                                                               cTGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtg       >  1:1829980‑M1/1‑5 (MQ=255)
                                                                                                tGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtggg     >  1:1533261‑M1/1‑4 (MQ=255)
                                                                                                tGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtggg     >  2:1423697‑M1/1‑4 (MQ=255)
                                                                                                tGATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgg      >  1:675322‑M1/1‑4 (MQ=255)
                                                                                                 gATaaaacagagtttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggcagtgtggg     >  2:1722426‑M1/1‑3 (MQ=255)
                                                                                                 gATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgggg    >  2:120908‑M1/1‑3 (MQ=255)
                                                                                                 gATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgggg    >  1:1250531‑M1/1‑3 (MQ=255)
                                                                                                 gATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgggg    <  2:760984‑M1/100‑98 (MQ=255)
                                                                                                 gATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgggg    <  1:153745‑M1/100‑98 (MQ=255)
                                                                                                 gATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgggg    <  1:162310‑M1/100‑98 (MQ=255)
                                                                                                 gATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgggg    >  1:1681098‑M1/1‑3 (MQ=255)
                                                                                                 gATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgggg    <  1:1716095‑M1/100‑98 (MQ=255)
                                                                                                 gATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgggg    <  1:311833‑M1/100‑98 (MQ=255)
                                                                                                 gATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgggg    <  1:313488‑M1/100‑98 (MQ=255)
                                                                                                 gATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgggg    <  2:1883776‑M1/100‑98 (MQ=255)
                                                                                                 gATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgggg    >  2:1687562‑M1/1‑3 (MQ=255)
                                                                                                 gATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgggg    >  1:497854‑M1/1‑3 (MQ=255)
                                                                                                 gATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgggg    <  1:57434‑M1/100‑98 (MQ=255)
                                                                                                 gATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgggg    >  1:834427‑M1/1‑3 (MQ=255)
                                                                                                 gATaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgggg    >  1:834435‑M1/1‑3 (MQ=255)
                                                                                                  aTaaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtggggt   >  1:495728‑M1/1‑2 (MQ=255)
                                                                                                   taaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtggggtc  >  2:1477116‑M1/1‑1 (MQ=255)
                                                                                                   taaaacagaatttgcctggcggcagtagcgcggtggtcccacctgaccccatgccgaactcagaagtgaaacgccgtagcgccgatggtagtgtgggg    >  2:1143574‑M1/1‑1 (MQ=255)
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ACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTATCAGACCGCTTCTGCGTTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAACG  >  NC_000913/3423723‑3423921

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.