| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3428910 = | 10 (0.120) | 11 (0.140) | 9/168 | NT | 53.8% | intergenic (‑148/‑326) | rrsD/yrdA | 16S ribosomal RNA of rrnD operon/bacterial transferase hexapeptide domain protein |
| ? | NC_000913 | = 4207974 | NA (NA) | intergenic (‑442/‑173) | purH/rrsE | IMP cyclohydrolase and phosphoribosylaminoimidazolecarboxamide formyltransferase/16S ribosomal RNA of rrnE operon | |||||
ACTCTTGAGACTTGGTATTCATTTTTCGTCTTGCGACGTTAAGAATCCGTATCTTCGAGTGCCCACACAGATTGTCTGATAAATTGTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTC > NC_000913/3428811‑3429009 | atgtgaatcacttcacacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcg > 2:643764‑M1/100‑100 (MQ=255)atgtgaatcacttcacacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcg > 1:1465542‑M1/100‑100 (MQ=255)atgtgaatcacttcacacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcg > 1:1726880‑M1/100‑100 (MQ=255)atgtgaatcacttcacacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcg > 1:2151889‑M1/100‑100 (MQ=255) tgtgaatcacttcacacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcgc > 2:53900‑M1/99‑100 (MQ=255) gtgaatcacttcacacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcgcg > 1:1286136‑M1/98‑100 (MQ=255) gtgaatcacttcacacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcgcg > 2:370980‑M1/98‑100 (MQ=255) tgaatcacttcacacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGa < 2:739432‑M1/4‑1 (MQ=255) tgaatcacttcacacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGa < 1:117691‑M1/4‑1 (MQ=255) gaatcacttcacacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGAc > 1:407723‑M1/96‑100 (MQ=255) gaatcacttcacacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGAc < 2:754315‑M1/5‑1 (MQ=255) gaatcacttcacacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGAc > 2:1983869‑M1/96‑100 (MQ=255) gaatcacttcacacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGAc > 2:1197320‑M1/96‑100 (MQ=255) gaatcacttcacacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGAc < 1:612737‑M1/5‑1 (MQ=255) gaatcacttcacacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGAc > 1:1025659‑M1/96‑100 (MQ=255) gaatcacttcacacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGAc > 1:1028265‑M1/96‑100 (MQ=255) gaatcacttcacacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGAc > 1:1337869‑M1/96‑100 (MQ=255) gaatcacttcacacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGAc < 1:1546633‑M1/5‑1 (MQ=255) gaatcacttcacacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGAc > 1:1741572‑M1/96‑100 (MQ=255) gaatcacttcacacaaacagacggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcataatatacgccacctcGCGAc < 2:1359445‑M1/5‑1 (MQ=255) ctacaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGACACGGCTTTCa > 2:1878704‑M1/86‑100 (MQ=255) acaaacagccggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGACACGGCTTtcaag < 1:1878716‑M1/17‑3 (MQ=255) cggttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGACGCGGCTTTCAGCTCACTGTcg > 1:1653276‑M1/75‑100 (MQ=255) gttcggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGTGACGCGGCTTTCAGCTCACTGTcgcg > 2:1344893‑M1/73‑100 (MQ=255) caacgaagagaaaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGACGCGGCTTTCAGCTCACTGTCGCGAg > 2:1564597‑M1/71‑100 (MQ=255) cggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGACGCG‑CTTT‑AGCGCACTGTCGCGAGGTg > 1:2129916‑M1/70‑100 (MQ=255) aacgaagagaaaaaaagcctgaaagtcagggttgactctgaaagaggaaagcgtaatatacgccacctcGCGACGCGGCTTTCAGCTCACTGTCGCGAg > 2:1063732‑M1/70‑99 (MQ=255) ggttgaagagaaaaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccaccttGCGACGCGGCTTTCAGCTCACTGTCGCGAGGt > 1:970900‑M1/69‑100 (MQ=255) ttgaagagaaaaatcctgaacttcggggttgactctgaaagaggaaagcgtaatatacgccacctcGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTgg > 1:972442‑M1/67‑100 (MQ=255) aaatcctgaaattcagggttgactctgaaagaggaaagcgtaatatacgccaccttGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTAc > 2:228677‑M1/57‑100 (MQ=255) gtctgTATCTTCGAGTGCCCACACAGATTGTCTGTTAAATTGTTAAAGAGCAGTTGCGACGCTGCTTTCAGCTCATTGTCGTGAGGTGGCGTAGATTACg < 2:645498/96‑1 (MQ=1) agggCCCACACAGATTGGCTGATAAATTGGTAAAGAGCATTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCttt < 1:191415/95‑1 (MQ=1) aagcgtaatatacgccacctcGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAgg > 1:1119381‑M1/22‑100 (MQ=255) gTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGAtttttt > 1:2079718/1‑100 (MQ=11) gTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGAtttttt > 1:1957904/1‑100 (MQ=11) tAATGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTtc < 2:157236/100‑1 (MQ=17) tAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTtc > 1:407656/1‑100 (MQ=32) aaaGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTtct < 1:22522/100‑1 (MQ=32) aaaGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTtct < 1:2151787/100‑1 (MQ=32) gagCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCtt < 1:304010/100‑1 (MQ=38) gagCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCtt > 1:2218919/1‑100 (MQ=38) cAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCgt < 2:633175/100‑1 (MQ=40) aGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCgtt < 1:422818/100‑1 (MQ=255) gTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCgttg < 2:371234/100‑1 (MQ=255) tGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCgttgtt < 2:1178061/100‑1 (MQ=255) tGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGGCAACCCTGAATTTCGGGATTTTTTTCTCTTCgttgtt > 2:1512691/1‑100 (MQ=255) GCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTc > 1:1915035‑M1/1‑100 (MQ=255) | ACTCTTGAGACTTGGTATTCATTTTTCGTCTTGCGACGTTAAGAATCCGTATCTTCGAGTGCCCACACAGATTGTCTGATAAATTGTTAAAGAGCAGTTGCGACGCGGCTTTCAGCTCACTGTCGCGAGGTGGCGTATATTACGCTTTCCTCTTTCAGAGTCAACCCTGAATTTCAGGATTTTTTTCTCTTCGTTGTTC > NC_000913/3428811‑3429009 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |