New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4606558 =NA (NA)5 (0.070) 5/164 NT NA noncoding (1/92 nt) REP351 (repetitive extragenic palindromic) element; contains 2 REP sequences REP351 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 4606590 = NA (NA)noncoding (33/92 nt) REP351 (repetitive extragenic palindromic) element; contains 2 REP sequences REP351 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 132 total aligned reads displayed.

GCTTTTCGTCAATAGTTAATTATCGACAGAGGTGTAATTGCTGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATT  >  NC_000913/4606459‑4606657
                                                                                                   |                                                                                                   
gccaggcgaagaaaggttaattatctcgccgaataccgtgtcggatgcggcgtgaacgccttatccgacctacaaaacctgcacgttagcccttcgtagg                                                                                                     >  1:1200741‑M1/100‑100 (MQ=255)
  ttttCGTCAATAGTTAATTATCGACAGAGGTGTAATTGCTGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGcagatgcc                                                                                                   <  1:2210797/100‑1 (MQ=255)
  ttttCGTCAATAGTTAATTATCGACAGAGGTGTAATTGCTGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGcagatgcc                                                                                                   >  2:508111/1‑100 (MQ=255)
  ttttCGTCAATAGTTAATTATCGACAGAGGTGTAATCGCTGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGcagatgcc                                                                                                   >  1:1584675/1‑100 (MQ=255)
  ttttCGTAAATAGTTAATTATCGACAGAGGTGAAATAAAAAAAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGcagatgcc                                                                                                   <  2:396389/100‑1 (MQ=255)
    ttCGTCAATAGTTAATTATCGACAGAGGTGTAATTGCTGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGcagatgccag                                                                                                 <  1:1142138/100‑1 (MQ=255)
    ggcgaagaaaggttaattatctcgccgaataccgtgtcggatgcggcgtgaacgccttatccgacctacaaaacctgcacgttagcccttcgtagGCCa                                                                                                  <  2:2228095‑M1/4‑1 (MQ=255)
    ggcgaagaaaggttaattatctcgccgaataccgtgtcggatgcggcgtgaacgccttatccgacctacaaaacctgcacgttagcccttcgtagGCCAg                                                                                                 >  2:1946578‑M1/96‑100 (MQ=255)
     gcgaagaaaggttaattatctcgccgaataccgtgtcggatgcggcgtgaacgccttatccgacctacaaaacctgcacgttagcccttcgtagGCCAGa                                                                                                >  2:2233590‑M1/95‑100 (MQ=255)
     gcgaagaaaggttaattatctcgccgaataccgtgtcggatgcggcgtgaacgccttatacgacctacaacacctgcacgttagccctccgtagCCCAGa                                                                                                <  2:1762251‑M1/6‑1 (MQ=255)
      cGTCAATAGTTAATTATCGACAGAGGTGTAATTGCTGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGcagatgccagat                                                                                               >  2:1635614/1‑100 (MQ=255)
      cGTCAATAGTTAATTATCGACAGAGGTGTAATTGCTGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGcagatgccagat                                                                                               >  2:1646028/1‑100 (MQ=255)
      cGTCAATAGTTAATTATCGACAGAGGTGTAATTGCTGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGcagatgccagat                                                                                               >  2:1225975/1‑100 (MQ=255)
      cGTCAATAGTTAATTATCGACAGAGGTGTAATTGCTGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGcagatgccagat                                                                                               >  1:1405385/1‑100 (MQ=255)
      cGTCAATAGTTAATTATCGACAGAGGTGTAATTGCTGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGcagatgccagat                                                                                               >  2:33450/1‑100 (MQ=255)
       gTCAATAGTTAATTATCGACAGAGGTGTAATTGCTGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGcagatgccagatg                                                                                              <  2:2157625/100‑1 (MQ=255)
       gTCAATAGTTAATTATCGACAGAGGTGTAATTGCTGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGcagatgccagatg                                                                                              <  1:79398/100‑1 (MQ=255)
       gTCAATAGTTAATTATCGACAGAGGTGTAATTGCTGGAAAAATGTCAATCAGGAAACTAGCGTGCAGGATTGGTATGCATGCGGGGGaagatgccagat                                                                                               >  2:1498392/1‑99 (MQ=255)
        tCAATAGTTAATTATCGACAGAGGTGTAATTGCTGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGcagatgccagatgc                                                                                             <  1:2203373/100‑1 (MQ=255)
         cAATAGTTAATTATCGACAGAGGTGTAATTGCTGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCg                                                                                            >  2:2119353/1‑100 (MQ=255)
          aaTAGTTAATTATCGACAGAGGTGTAATTGCTGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCGGATGCGa                                                                                           <  1:1173481/100‑1 (MQ=255)
           aTAGTTAATTATCGACAGAGGTGTAATTGCTGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGAc                                                                                          <  1:1599573/100‑1 (MQ=255)
                tAATTATCGACAGAGGTGTAATTGCTGAAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTgg                                                                                     >  1:482382/1‑100 (MQ=255)
                 aaTTATCGACAGAGGTGTAATTGCTGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGgc                                                                                    <  1:371071/100‑1 (MQ=255)
                    tATCGACAGAGGTGTAATTGCTGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGgcg                                                                                   >  1:670732/1‑98 (MQ=255)
                    tATCGACAGAGGTGTAATTGCTGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGcgcg                                                                                 >  1:1078385/1‑100 (MQ=255)
                    tATCGACAGAGGTGTAATTGCTGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGcgcg                                                                                 <  2:283822/100‑1 (MQ=255)
                    tATCGACAGAGGTGTAATTGCTGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGcgcg                                                                                 <  2:1222783/100‑1 (MQ=255)
                      tCGACAGAGGTGTAATTGCTGGAAAAATGTCCATCAGGAAACTAGCGTGCTGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTc                                                                               <  1:1424403/100‑1 (MQ=255)
                      tCGACAGAGGTGTAATTGCTGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTc                                                                               <  1:1005269/100‑1 (MQ=255)
                       cGACAGAGGTGTAATTGCTGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCt                                                                              <  2:1293613/100‑1 (MQ=255)
                       cGACAGAGGTGTAATTGCTGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCt                                                                              <  1:1269374/100‑1 (MQ=255)
                        gACAGAGGTGTAATTGCTGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCtt                                                                             >  2:2224101/1‑100 (MQ=255)
                        gACAGAGGTGTAATTGCTGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCtt                                                                             >  2:360201/1‑100 (MQ=255)
                         aCAGAGGTGTAATTGCTGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTa                                                                            <  2:1405375/100‑1 (MQ=255)
                           agagGTGTAATTGCTGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATc                                                                          <  2:2070309/100‑1 (MQ=255)
                           agagGTGTAATTGCTGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATc                                                                          <  2:450353/100‑1 (MQ=255)
                           agagGTGTAATTGCTGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATc                                                                          <  2:1549822/100‑1 (MQ=255)
                            gagGTGTAATTGCTGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCt                                                                         <  1:1583731/100‑1 (MQ=255)
                            gagGTGTAATTGCTGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCt                                                                         >  2:925057/1‑100 (MQ=255)
                            gagGTGTAATTGCTGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCt                                                                         <  1:1260897/100‑1 (MQ=255)
                            gagGTGTAATTGCTGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCt                                                                         >  1:876118/1‑100 (MQ=255)
                               gtgtAATTGCTGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGc                                                                      >  1:1276907/1‑100 (MQ=255)
                               aataccgtgtcggatgcggcgtgaacgccttatccgacctacaaaacctgcacgttagcccttcgtagGCCAGATGCGACGCTGGCGCGTCTTATCTGGc                                                                      >  1:786706‑M1/69‑100 (MQ=255)
                                ataccgtgtcggatgcggcgtgaacgccttatccgacctacaaaacctgcacgttagcccttcgtagGCCAGATGCGACGCTGGCGCGTCTTATCTGGcc                                                                     >  1:1504370‑M1/68‑100 (MQ=255)
                                 taccgtgtcggatgcggcgtgaacgccttatccgacctacaaaacctgcacgttagcccttcgtagGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCt                                                                    >  2:997907‑M1/67‑100 (MQ=255)
                                  tAATTGCTGTAAAAATGTCCATCAGGAAACTGGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCt                                                                    <  1:1751778/99‑1 (MQ=255)
                                   aaTTGCTGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTAc                                                                  >  1:1762262/1‑100 (MQ=255)
                                   aaTTGCTGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTAc                                                                  >  1:1703601/1‑100 (MQ=255)
                                       ncTGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAg                                                              >  2:1608642/2‑100 (MQ=255)
                                       gCTGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAg                                                              <  2:785799/100‑1 (MQ=255)
                                        cTGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAgg                                                             <  1:1424050/100‑1 (MQ=255)
                                         tGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAggg                                                            >  1:895270/1‑100 (MQ=255)
                                         tGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAggg                                                            >  1:613962/1‑100 (MQ=255)
                                          ggAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGTCCTACGAAGGGc                                                           >  1:422088/1‑100 (MQ=255)
                                          ggAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGc                                                           >  2:1041557/1‑100 (MQ=255)
                                          ggAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGc                                                           >  2:985935/1‑100 (MQ=255)
                                          ggAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGc                                                           <  2:166677/100‑1 (MQ=255)
                                          ggAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGAGGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGc                                                           >  1:1719615/1‑100 (MQ=255)
                                               aaTGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACg                                                      <  2:1120366/100‑1 (MQ=255)
                                                  gTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGc                                                   <  1:985937/100‑1 (MQ=255)
                                                    ccATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAg                                                 >  1:1709657/1‑100 (MQ=255)
                                                    ccATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAg                                                 >  1:1912299/1‑100 (MQ=255)
                                                     cATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAgg                                                >  1:1457232/1‑100 (MQ=255)
                                                     cATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAgg                                                >  2:1810967/1‑100 (MQ=255)
                                                     cATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAg                                                 >  1:567268/1‑99 (MQ=255)
                                                      aacgccttatccgacctacaaaacctgcacgttagcccttcgtagGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAgg                                                >  1:2124270‑M1/46‑99 (MQ=255)
                                                       tCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGCCCTACGAACGGCTAACGTGCAGCtt                                              >  2:47934/1‑100 (MQ=255)
                                                        cAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGttt                                             <  2:1812467/100‑1 (MQ=255)
                                                           gAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGt                                          <  1:2242984/100‑1 (MQ=255)
                                                            aaaCTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGt                                          >  2:1986597/1‑99 (MQ=255)
                                                            aaaCTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTa                                         <  2:690707/100‑1 (MQ=255)
                                                                tAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTc                                     <  1:789730/100‑1 (MQ=255)
                                                                   cGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGa                                  <  1:1041559/100‑1 (MQ=255)
                                                                    gTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGGTGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGAt                                 >  1:1069813/1‑100 (MQ=255)
                                                                     tGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATa                                >  2:1461829/1‑100 (MQ=255)
                                                                        aGGTTTGGTATGCATGCGGGGGCATATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCgg                                   <  2:10813/94‑1 (MQ=255)
                                                                        aGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAgg                             <  1:33473/100‑1 (MQ=255)
                                                                         ggTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGc                            >  2:51501/1‑100 (MQ=255)
                                                                          gTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTAGCGCGTCTTATCGGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAg                              <  1:846578/97‑1 (MQ=255)
                                                                              ggTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCa                       >  2:339837/1‑100 (MQ=255)
                                                                               gTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGTATAAGGCGTTctc                      <  1:1521293/100‑3 (MQ=255)
                                                                                tATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCAcg                     <  2:253110/100‑1 (MQ=255)
                                                                                  tgcatgcGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCAcgcc                   >  1:870730/1‑100 (MQ=255)
                                                                                   gcatgcGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCAcgccg                  >  2:1649255/1‑100 (MQ=255)
                                                                                   gcatgcGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCAcgccg                  >  1:649257/1‑100 (MQ=255)
                                                                                   gcatgcGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCAcgccg                  <  1:1905918/100‑1 (MQ=255)
                                                                                     atgcGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCAcgcc                   <  1:1386248/97‑1 (MQ=255)
                                                                                     atgcGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCa                <  1:1548107/100‑1 (MQ=255)
                                                                                        cGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATcc             <  2:1584664/100‑1 (MQ=255)
                                                                                          ggggCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGa           >  2:860147/1‑100 (MQ=255)
                                                                                          ggggCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATACGa           >  1:2016093/1‑100 (MQ=255)
                                                                                           gggCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGac          <  2:154526/100‑1 (MQ=255)
                                                                                            ggCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATGCGGCGTGAACGCCTTATCCGacc         <  2:283612/100‑2 (MQ=18)
                                                                                             gcagatggcagatgCGACGCTGGCGCGTCTTAGCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATGCGGCGTGAACGCCTTATCCGacct        <  2:1107057/100‑3 (MQ=17)
                                                                                              cagatgccagatgcGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGacac        >  1:1390749/1‑99 (MQ=255)
                                                                                               agatgccagatgcGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACgg      <  1:925059/100‑1 (MQ=255)
                                                                                                gatgccagatgcGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGt     >  2:492113/1‑100 (MQ=255)
                                                                                                 atgccagatgcGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTa    >  1:2061880/1‑100 (MQ=255)
                                                                                                   GCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTAtt  <  1:297493‑M1/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
GCTTTTCGTCAATAGTTAATTATCGACAGAGGTGTAATTGCTGGAAAAATGTCCATCAGGAAACTAGCGTGCAGGTTTGGTATGCATGCGGGGGCAGATGCCAGATGCGACGCTGGCGCGTCTTATCTGGCCTACGAAGGGCTAACGTGCAGGTTTTGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACACGGTATT  >  NC_000913/4606459‑4606657

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.