New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1432761	NA (NA)	8 (0.100)	4/170	NT	NA	coding (351/576 nt)	tfaR	Rac prophage; putative tail fiber assembly protein
	?	NC_000913	= 1432785	NA (NA)					coding (375/576 nt)	tfaR	Rac prophage; putative tail fiber assembly protein

TGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGCACAGCCTGGGTGAAGGATA‑CGGAAGCAGAAAAACTGTTCCGGATCCGGGAGGCGGAAGAAACAAA  >  NC_000913/1432674‑1432808                                                                                        |                                                 tGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGCACAGCCTGGGTGAAGGAGATCGGAAgagcg                                      >  2:1841582/1‑96 (MQ=1)                                     atcttcgtaaGGGGAGTTTCAGAGGTGGAAGGGCAGAGCCTGGGTGAAGGATA‑CGGAAGCAGAAAATCTGTTCCGGATTCGGGAGGCGGAAGAAACaaa  <  2:1777596/91‑1 (MQ=1)                                                                                        |                                                 TGAACTCGGTCCGTTACCGGAAAATGTTACCTGGTTATCGCCGGAAGGGGAGTTTCAGAAGTGGAACGGCACAGCCTGGGTGAAGGATA‑CGGAAGCAGAAAAACTGTTCCGGATCCGGGAGGCGGAAGAAACAAA  >  NC_000913/1432674‑1432808

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.