New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 2617939 =NA (NA)6 (0.080) 4/164 NT NA intergenic (+2/+136) yfgD/hda putative oxidoreductase/ATPase regulatory factor involved in DnaA inactivation
?NC_000913 2617967 = NA (NA)intergenic (+30/+108) yfgD/hda putative oxidoreductase/ATPase regulatory factor involved in DnaA inactivation

TGGATAATCCGAAGCTGATGGAGCGCCCGATTGTGGTCGCGAATGGCAAAGCGCGGATTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATA  >  NC_000913/2617840‑2618038
                                                                                                   |                                                                                                   
ttattgtcggatgcggcgcgaacgccttatccgaactacgcgaagttaatccatagtattcgtaggccggataagacgtggcaagcgtcgcatccggcaa                                                                                                     <  2:1126374‑M1/1‑1 (MQ=255)
tggGTAATCCGAAGCTGATGGAGCGCCCGATTGTGGTCGCGAATGGCAAAGCGCGGATTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGa                                                                                                     <  1:606510/100‑1 (MQ=255)
  gATAATCCGAAGCTGATGGAGCGCCCGATTGTGGTCGCGAATGGCAAAGCGCGGATTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGAtg                                                                                                   <  2:2220135/100‑1 (MQ=255)
  gATAATCCGAAGCTGATGGAGCGCCCGATTGTGGTCGCGAATGGCAAAGCGCGGATTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGAt                                                                                                    <  2:249246/99‑1 (MQ=255)
   ttgtcggatgcggcgcgaacgccttatccgaactacgcgaagttaatccatagtattcgtaggccggataagacgtggcaagcgtcgcatccggcaAtgt                                                                                                  >  1:2168281‑M1/97‑100 (MQ=255)
   ttgtcggaggccgcgcgaatgccttattcgaactacgcgaagttaatccatagtattcgtaggccggataagttgtggcaagcgtcgcatccggcaAtg                                                                                                   >  2:1969489‑M1/97‑99 (MQ=255)
    tAATCCGAAGCTGATGGAGCGCCCGATTGTGGTCGCGAATGGCAAAGCGCGGATTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGAtgtg                                                                                                 >  2:1137441/1‑100 (MQ=255)
     gtcggatgcggcgcgaacgccttatccgaactacgcgaagttaatccatagtattcgtaggccggataagacgtggcaagcgtcgcatccggcaATGTGc                                                                                                <  2:806241‑M1/6‑1 (MQ=255)
      tcggatgcggggcgaacgccttatccgaactacgcgaagttaatccatagtattcgtaggccggataagacgtggcaagcgtcgcatccggcaATGTGCt                                                                                               >  2:1934286‑M1/94‑100 (MQ=255)
      aTCCGAAGCTGATGGAGCGCCCGATTGTGGTCGCGAATGGCAAAGCGCGGATTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCt                                                                                               <  1:172525/100‑1 (MQ=255)
        ccGAAGCTGATGGAGCGCCCGATTGTGGTCGCGAATGGCAAAGCGCGGATTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTcc                                                                                             >  2:1316192/1‑100 (MQ=255)
           aaGCTGATGGAGCGCCCGATTGTGGTCGCGAATGGCAAAGCGCGGATTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATc                                                                                          <  2:2170027/100‑1 (MQ=255)
           aaGCTGATGGAGCGCCCGATTGTGGTCGCGAATGGCAAAGCGCGGATTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATc                                                                                          <  1:1769613/100‑1 (MQ=255)
            aGCTGATGGAGCGCCCGATTGTGGTCGCGAATGGCAAAGCGCGGATTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCg                                                                                         >  2:405466/1‑100 (MQ=255)
            aGCTGATGAAGCGCCCGATTGTGGTCGCGAATGGCAAAGCGCGGATTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCg                                                                                         <  1:591210/100‑1 (MQ=255)
             gCTGATGGAGCGCCCGATTGTGGTCGCGAATGGCAAAGCGCGGATTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGc                                                                                        <  1:1485258/100‑1 (MQ=255)
              cTGATGGAGCGCCCGATTGTGGTCGCGAATGGCAAAGCGCGGATTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCt                                                                                       <  2:1419593/100‑1 (MQ=255)
               tGATGGAGCGCCCGAATGAGGTCGCGAATGGCAAAGCGCGGATTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGCTAAGATGTGCTCCATCGCTa                                                                                      >  2:1089130/1‑100 (MQ=255)
                gATGGAGCGCCCGATTGTGGTCGCGAATGGCAAAGCGCGGATTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAg                                                                                     <  1:790298/100‑1 (MQ=255)
                 aTGGAGCGCCCGATTGTGGTCGCGAATGGCAAAGCGCGGATTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGt                                                                                    <  1:2211645/100‑1 (MQ=255)
                   ggAGCGCCCGATTGTGGTCGCGAATGGCAAAGCGCGGATTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTg                                                                                  <  2:1956138/100‑1 (MQ=255)
                   ggAGCGCCCGATTGTGGTCGCGAATGGCAAAGCGCGGATTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTg                                                                                  <  1:2175068/100‑1 (MQ=255)
                    gAGCGCCCGATTGTGGTCGCGAATGGCAAAGCGCGGATTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGa                                                                                 <  1:1676621/100‑1 (MQ=255)
                      gcgcCCGATTGTGGTCGCGAATGGCAAAGCGCGGATTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAg                                                                               >  2:813439/1‑100 (MQ=255)
                             tccgaactacgcgaagttaatccatagtattcgtaggccggataagacgtggcaagcgtcgcatccggcaATGTGCTCCATCGCTAGTTGAAGCACATTg                                                                        >  1:1503207‑M1/71‑100 (MQ=255)
                             aTTGTGGTCGCGAATGGCAAAGCGCGGATTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTg                                                                        <  1:745031/100‑1 (MQ=255)
                              ccgaactacgcgaagttaatccatagtattcgtaggccggataagacgtggcaagcgtcgcatccggcaATGTGCTCCATCGCTAGTTGAAGCACATTGc                                                                       >  1:1697267‑M1/70‑100 (MQ=255)
                              ccgaactacgcgaagttaatccatagtattcgtaggcccgataagacgtggcaagcgtcgcatccggcaATGTGCTCCATCGCTAGTTGAAGCACATTGc                                                                       >  2:487365‑M1/70‑100 (MQ=255)
                               tgtgGTCGCGAATGGCAAAGCGCGGATTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGcc                                                                      <  2:1040151/100‑1 (MQ=255)
                               cgaactacgtggagttaatccatagtattcgtacgccggataagacgtggcaagcgtcgcatccggcaATGTGCTCCATCGCTAGTTGAAGCACATTGcc                                                                      >  2:1046988‑M1/69‑100 (MQ=255)
                                gtgGTCGCGAATGGCAAAGCGCGGATTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGcc                                                                      >  2:1050267/1‑99 (MQ=255)
                                gtgGTCGCGAATGGCAAAGCGCGGATTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCg                                                                     <  1:195186/100‑1 (MQ=255)
                                gaactacgcgaagttaatccatagtattcgtaggccggataagacgtggcaagcgtcgcatccggcaATGTGCTCCATCGCTAGTTGAAGCACATTGCCg                                                                     >  1:2228208‑M1/68‑100 (MQ=255)
                                 aactacgcgaagttaatccatagtattcgtaggccggataagacgtggcaagcgtcgcatccggcaATGTGCTCCATCGCTAGTTGAAGCACATTGc                                                                       >  1:1174918‑M1/67‑97 (MQ=255)
                                   gTCGCGAATGGCAAAGCGCGGATTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGa                                                                   >  2:771054/1‑99 (MQ=255)
                                   gTCGCGAATGGCAAAGCGCGGATTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGAt                                                                  >  1:1685601/1‑100 (MQ=255)
                                     cgcgAATGGCAAAGCGCGGATTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGc                                                                >  1:1515324/1‑100 (MQ=255)
                                      gcgAATGGCAAAGCGCGGATTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGc                                                                <  1:1226386/99‑1 (MQ=255)
                                       cgAATGGCAAAGCGCGGATTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGa                                                              >  2:5256/1‑100 (MQ=255)
                                        gAATGGCAAAGCGCGGATTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGAc                                                             <  1:1020526/100‑1 (MQ=255)
                                        gAATGGCAAAGCGCGGATTAGTCGTCCACCGGAGAAGGGACGGGAAATCATGGGTTAAGATGTGCTCCATCCCTGGATGAAGCACATTg                                                                        >  2:1897799/1‑89 (MQ=255)
                                           tGGCAAAGCGCGGATTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATTGCTAGTTGAAGCACATTGCCGGATGCGACGCt                                                          <  2:1043328/100‑1 (MQ=255)
                                           tGGCAAAGCGCGGATTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCt                                                          >  2:529077/1‑100 (MQ=255)
                                             gCAAAGCGCGGATTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTg                                                        >  1:436106/1‑100 (MQ=255)
                                             gCAAAGCGCGGATTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTg                                                        >  1:579268/1‑100 (MQ=255)
                                             gCAAAGCGCGGATTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACACTTg                                                        >  2:1021945/1‑100 (MQ=255)
                                              cAAAGCGCGGATTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGc                                                       >  1:806241/1‑100 (MQ=255)
                                               aaaGCGCGGATTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGcc                                                      <  2:306543/100‑1 (MQ=255)
                                               aaaGCGCGGATTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGcc                                                      <  1:135519/100‑1 (MQ=255)
                                               aaaGCGCGGATTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGcc                                                      <  1:992063/100‑1 (MQ=255)
                                                 aGCGCGGATTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCAc                                                    >  1:2010649/1‑100 (MQ=255)
                                                 aGCGCGGATTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCAc                                                    <  2:358291/100‑1 (MQ=255)
                                                  gcgcGGATTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACg                                                   <  1:1322512/100‑1 (MQ=255)
                                                  gcgcGGATTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACg                                                   <  2:1428714/100‑1 (MQ=255)
                                                   cgcgGATTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGt                                                  <  1:159087/100‑1 (MQ=255)
                                                     cgGATTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTc                                                 <  1:209325/99‑1 (MQ=255)
                                                     cgGATTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCt                                                <  2:787782/100‑1 (MQ=255)
                                                       gATTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTGGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCtt                                               >  2:1634261/1‑99 (MQ=255)
                                                        aTTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGATAAAATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTAt                                             >  2:1251873/1‑100 (MQ=255)
                                                          tGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTAt                                             >  1:783157/1‑98 (MQ=255)
                                                           ggTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCg                                          >  1:1238485/1‑100 (MQ=255)
                                                            gtggtcCACTGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGACGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCgg                                         <  2:202733/97‑1 (MQ=255)
                                                              cgtcCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGcc                                       <  2:1950600/100‑1 (MQ=255)
                                                              cgtcCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGcc                                       <  1:1089486/100‑1 (MQ=255)
                                                              cgtcCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGcc                                       <  1:356626/100‑1 (MQ=255)
                                                              cgtcCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGcc                                       >  1:679454/1‑100 (MQ=255)
                                                              cgtcCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGcc                                       >  1:997584/1‑100 (MQ=255)
                                                               gtcCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCt                                      >  2:1389054/1‑100 (MQ=255)
                                                                  cACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACg                                   >  2:79110/1‑100 (MQ=255)
                                                                  cACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACg                                   <  1:1120846/100‑1 (MQ=255)
                                                                    ccGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGCAGCACATTGCCGGATGCCACGCTTGCCACGTCTTATCCGTCCTACGaa                                 >  1:18972/1‑100 (MQ=255)
                                                                      ggAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATa                               <  2:827890/100‑1 (MQ=255)
                                                                          cAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTAt                           >  1:1151982/1‑100 (MQ=255)
                                                                          cAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTAt                           <  1:521655/100‑1 (MQ=255)
                                                                          cAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTAt                           >  2:949580/1‑100 (MQ=255)
                                                                           tggTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATg                          <  1:2224948/99‑1 (MQ=255)
                                                                            ggTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATgg                         >  1:2082501/1‑100 (MQ=255)
                                                                            ggTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATga                         >  2:2224933/1‑99 (MQ=255)
                                                                            ggTACTGGAAATCGTGGGTTAAGAGGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATgg                         <  2:1952577/100‑1 (MQ=255)
                                                                             gTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGa                        <  1:1523267/100‑1 (MQ=255)
                                                                                cTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTa                     <  1:1503260/100‑1 (MQ=255)
                                                                                 tGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTaa                    >  2:1910198/1‑100 (MQ=255)
                                                                                  ggAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAAc                   >  2:1353503/1‑100 (MQ=255)
                                                                                   gAAATCGTGGGTTAAGATGTGCCCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTAACCGGCCTACGAAGACTATGGATTAACt                  >  1:750713/1‑100 (MQ=255)
                                                                                      aTCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTcg               <  1:257018/100‑1 (MQ=255)
                                                                                        cGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTcgcg             <  1:2041871/100‑1 (MQ=255)
                                                                                        cGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTcgcg             <  1:405465/100‑1 (MQ=255)
                                                                                        cGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTcgc              <  2:1208789/99‑1 (MQ=255)
                                                                                         gTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGt            <  2:1515314/100‑1 (MQ=255)
                                                                                            ggTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGt         >  2:1264241/1‑100 (MQ=255)
                                                                                                aaGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCgg     <  1:1611355/100‑1 (MQ=255)
                                                                                                aaGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCgg     <  1:1255317/100‑1 (MQ=255)
                                                                                                 aGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGa    >  2:1077286/1‑100 (MQ=255)
                                                                                                   ATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGTATTAACTTCGCGTAGTTCGGATa  >  2:578468‑M1/1‑100 (MQ=255)
                                                                                                   |                                                                                                   
TGGATAATCCGAAGCTGATGGAGCGCCCGATTGTGGTCGCGAATGGCAAAGCGCGGATTGGTCGTCCACCGGAGCAGGTACTGGAAATCGTGGGTTAAGATGTGCTCCATCGCTAGTTGAAGCACATTGCCGGATGCGACGCTTGCCACGTCTTATCCGGCCTACGAATACTATGGATTAACTTCGCGTAGTTCGGATA  >  NC_000913/2617840‑2618038

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.