New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3214896 =NA (NA)6 (0.080) 4/168 NT NA noncoding (5/33 nt) REP227 (repetitive extragenic palindromic) element; contains 1 REP sequences REP227 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 3214925 = NA (NA)intergenic (+37/+42) rpoD/mug RNA polymerase, sigma 70 (sigma D) factor/G/U mismatch‑specific DNA glycosylase; xanthine DNA glycosylase

Only 100 of 108 total aligned reads displayed.

CGCTGCGCAAACTGCGTCACCCGAGCCGTTCTGAAGTGCTGCGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACC  >  NC_000913/3214827‑3215018
                                                                                                  |                                                                                             
cgcTGCGCAAACTGCGTCACCCGAGCCGTTCTGAAGTGCTGCGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCAc                                                                                              <  1:1498254/100‑1 (MQ=255)
  cggcgcAAACTGGGTCACCCGAGCCGTTCTGAAGTGCTGCGTAGCTTCCTGGACGATGAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTa                                                                                            <  2:935984/98‑1 (MQ=255)
    gcgcAAACTGCGTCACCCGAGCCGTTCTGAAGTGCTGCGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAgg                                                                                          >  1:1072338/1‑100 (MQ=255)
    gcgcAAACTGCGTCACCCGAGCCGTTCTGAAGTGCTGCGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAgg                                                                                          <  2:1182831/100‑1 (MQ=255)
    gcgcAAACTGCGTCACCCGAGCCGTTCTGAAGTGCTGCGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAgg                                                                                          <  2:1565765/100‑1 (MQ=255)
     gctggtagtgcgtgggcgataaaaaacgccaccgaaaaggtggcgtttgtgcagagggcctagtGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGc                                                                                         >  1:1042824‑M1/65‑100 (MQ=255)
     cgcAAACTGCGTCACCCGAGCCGTTCTGAAGTGCTGCGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGc                                                                                         <  2:1875274/100‑1 (MQ=255)
     cgcAAACTGCGTCACCCGAGCCGTTCTGAAGTGCTGCGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGc                                                                                         <  2:295071/100‑1 (MQ=255)
     cgcAAACTGCGTCACCCGAGCCGTTCTGAAGTGCTGCGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGc                                                                                         >  1:1635265/1‑100 (MQ=255)
      gcAAACTGCGTCACCGGAGCCGTTCTGAAGTGCGGCGTAGCTTCCTGGAAGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGc                                                                                         >  2:870370/1‑99 (MQ=255)
      ctggtagtgcgtgggcgataaaaaacgccaccgaaaaggtggcgtttgtgcagagggcctagtGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGc                                                                                         >  1:2009500‑M1/64‑99 (MQ=255)
       cAAACTGCGTCACCCGAGCCGTTCTGAAGTGCTGCGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGccc                                                                                       <  1:614087/100‑1 (MQ=255)
       cAAACTGCGTCACCCGAGCCGTTCTGAAGTGCTGCGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGccc                                                                                       >  1:2030509/1‑100 (MQ=255)
         aaCTGCGTCACCCGAGCCGTTCTGAAGTGCTGCGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCctc                                                                                     <  1:1750318/100‑1 (MQ=255)
              cGTCACCCGAGCCGTTCTGAAGTGCTGCGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGcac                                                                                >  2:1778019/1‑100 (MQ=255)
                tCACCCGAGCCGTTCTGAAGTGCTGCGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACaa                                                                              <  2:417430/100‑1 (MQ=255)
                 cACCCGAGCCGTTCTGAAGTGCTGCGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGTGTTACGCCGCACCCGGCACTAGGCCCTCTGCACaaa                                                                             <  2:446286/100‑1 (MQ=255)
                 cACCCGAGCCGTTCTGAAGTGCTGCGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACaaa                                                                             >  1:467078/1‑100 (MQ=255)
                  aCCCGAGCCGTTCTGAAGTGCTGCGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAAc                                                                            <  2:167467/100‑1 (MQ=255)
                   cccGAGCCGTTCTGAAGTGCTGCGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAAc                                                                            <  1:1762744/99‑1 (MQ=255)
                   cccGAGCCGTTCTGAAGTGCTGCGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACg                                                                           <  1:1862736/100‑1 (MQ=255)
                    ccGAGCCGTTCTGAAGTGCTGCGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACg                                                                           <  1:159625/99‑1 (MQ=255)
                       aGCCGTTCTGAAGTGCTGCGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCAc                                                                       <  1:1671976/100‑1 (MQ=255)
                       aGCCGTTCTGAAGTGCTGCGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCAc                                                                       <  1:317351/100‑1 (MQ=255)
                            ttCTGAAGTGCTGCGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCtttt                                                                  <  1:217602/100‑1 (MQ=255)
                              cTGAAGTGCTGCGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCg                                                                <  2:628598/100‑1 (MQ=255)
                              cTGAAGTGCTGCGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACACCACCTTTTCg                                                                <  1:1914792/100‑1 (MQ=255)
                               tGAAGTGCTGCGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCgg                                                               >  2:1519643/1‑100 (MQ=255)
                                gAAGTGCTGCGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGt                                                              <  1:683845/100‑1 (MQ=255)
                                gAAGTGCTGCGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGt                                                              <  1:1778031/100‑1 (MQ=255)
                                gAAGTGCTGCGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGt                                                              >  1:1668618/1‑100 (MQ=255)
                                gAAGTGCTGCGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTCTCGGt                                                              >  2:946360/1‑100 (MQ=255)
                                 aaGTGCTGCGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTg                                                             <  2:185739/100‑1 (MQ=255)
                                  aGTGCTGCGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTgg                                                            <  1:1198804/100‑1 (MQ=255)
                                  aGTGCTGCGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTgg                                                            <  1:1072981/100‑1 (MQ=255)
                                    ttctgcTTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCg                                                          <  1:1470821/98‑1 (MQ=255)
                                    tgctgcGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCg                                                          <  2:353785/100‑1 (MQ=255)
                                     gctgcGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCTTTACGCCGCACCCTGCACTAGGCCCTCTGCACATTCGCTACCTTTTCGGTGGCGt                                                         <  2:720012/100‑1 (MQ=255)
                                      ctgcGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGtt                                                        >  2:1787366/1‑100 (MQ=255)
                                        gcGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGtttt                                                      >  1:1486175/1‑100 (MQ=255)
                                         cGTAGCTTCCTGGACGATTAATCGGTAGGCTGTATTAGGCGTTACGCCGCACCGGGCACTAGGCCCTCTGCACAAACGCCACCGAAAAGGTGGCGtttgt                                                     <  1:878825/100‑3 (MQ=25)
                                         cGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGttttt                                                     <  1:2027220/100‑1 (MQ=255)
                                          gTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGtttttt                                                    >  2:376322/1‑100 (MQ=255)
                                           tAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTa                                                   <  1:2065229/100‑1 (MQ=255)
                                           tAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTa                                                   >  1:249023/1‑100 (MQ=255)
                                             gCTTCCTGGACGATTACTCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACCAACGCCACCTTTTCGGTGGCGTTTTTTATc                                                 >  1:2185780/1‑100 (MQ=255)
                                             gCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTAt                                                  >  1:2139301/1‑99 (MQ=255)
                                             gCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATc                                                 >  2:473881/1‑100 (MQ=255)
                                                tCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGcc                                              <  1:1989623/100‑1 (MQ=255)
                                                  cTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGGGTTTTTTATCGCCCa                                            >  1:2211700/1‑100 (MQ=255)
                                                  cTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCa                                            >  2:951115/1‑100 (MQ=255)
                                                  cTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCa                                            >  2:520247/1‑100 (MQ=255)
                                                    ggACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACg                                          <  2:1669521/100‑1 (MQ=255)
                                                     gACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGc                                         <  1:663411/100‑1 (MQ=255)
                                                       cGATTAATTGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTATGCACAAACGCAACCTTTTCGGTGGCGTATTTTATCGCCCACGCAc                                       >  2:611843/1‑100 (MQ=39)
                                                       cGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCAc                                       >  1:522859/1‑100 (MQ=255)
                                                        gATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCAc                                       <  2:557791/99‑1 (MQ=255)
                                                          ttAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTAc                                    >  1:1685472/1‑100 (MQ=255)
                                                           tAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTAcc                                   <  1:1186807/100‑1 (MQ=255)
                                                           tAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTAcc                                   <  2:2017522/100‑1 (MQ=255)
                                                           tAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTAcc                                   <  1:1943133/100‑1 (MQ=255)
                                                           tAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTAcc                                   >  1:2166898/1‑100 (MQ=255)
                                                            aaTCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCa                                  >  1:1182225/1‑100 (MQ=255)
                                                             aTCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAg                                 >  1:1529866/1‑100 (MQ=255)
                                                              gcctagtgccgggtgcggcgtaacgcctgatccggcACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAgc                                >  1:1042824‑M2/37‑100 (MQ=255)
                                                              gcctagtgccgggtgcggcgtaacgcctgatccggcACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAg                                 >  1:2009500‑M2/37‑99 (MQ=255)
                                                               cGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAgcg                               <  1:2216492/100‑1 (MQ=255)
                                                               cGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAgcg                               >  1:2124924/1‑100 (MQ=255)
                                                               cGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAgcg                               <  2:1005826/100‑1 (MQ=255)
                                                                ggTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCTCCTACCCACTACCAgcgc                              >  2:718040/1‑100 (MQ=255)
                                                                ctagtgccgggtgcggcgtaacgcctgatccggcACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAgcgc                              >  2:2160597‑M2/35‑100 (MQ=255)
                                                                 gTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGcc                             >  1:726283/1‑100 (MQ=255)
                                                                 gTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGcc                             >  2:803312/1‑100 (MQ=255)
                                                                     gccgggtgcggcgtaacgcctgatccggcACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTg                           >  1:202932‑M2/30‑98 (MQ=255)
                                                                      ccgggtgcggcgtaacgcctgatccggcACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGt                         >  1:989941‑M2/29‑99 (MQ=255)
                                                                        GGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAACCGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTcc                       >  2:1734609‑M1/1‑99 (MQ=255)
                                                                         GATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAg                     >  1:922356‑M1/1‑100 (MQ=255)
                                                                         GATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAg                     >  2:1680234‑M1/1‑100 (MQ=255)
                                                                          aTCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAGCGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAg                     <  2:1797117/99‑1 (MQ=255)
                                                                          aTCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGc                    <  1:473880/100‑1 (MQ=255)
                                                                          aTCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGc                    >  1:1344927/1‑100 (MQ=255)
                                                                          aTCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTGTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGc                    <  1:2089611/100‑1 (MQ=255)
                                                                            cAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTc                  >  1:1995680/1‑100 (MQ=255)
                                                                             aGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCTAGCTcg                 >  1:2137701/1‑100 (MQ=255)
                                                                             aGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGACTGGTCCACCTc                  >  1:1300968/1‑99 (MQ=255)
                                                                              ggCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCATCTcgc                >  2:2042196/1‑100 (MQ=255)
                                                                              ggCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTcgc                >  1:1852974/1‑100 (MQ=255)
                                                                              ggCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTcgc                <  2:946753/100‑1 (MQ=255)
                                                                               gCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTcgcg               >  1:254364/1‑100 (MQ=255)
                                                                               gCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTcgcg               >  2:2037753/1‑100 (MQ=255)
                                                                                 gTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGAt             <  2:2228178/100‑1 (MQ=255)
                                                                                    aCGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACg          >  2:616570/1‑100 (MQ=255)
                                                                                      gccgcACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCt        <  1:2127733/100‑1 (MQ=255)
                                                                                       ccgcACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCtt       >  1:395135/1‑100 (MQ=255)
                                                                                       ccgcACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATAAGCtt       >  1:769351/1‑100 (MQ=255)
                                                                                        cgcACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTc      <  2:438819/100‑1 (MQ=255)
                                                                                        cgcACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTc      <  2:726283/100‑1 (MQ=255)
                                                                                          cACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCaa    <  2:346369/100‑1 (MQ=255)
                                                                                            cccGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCTTTGTCCAGCTCGCGATACGCTTCAAcc  <  2:516195/100‑1 (MQ=255)
                                                                                            cccGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAAcc  >  2:1513925/1‑100 (MQ=255)
                                                                                                  |                                                                                             
CGCTGCGCAAACTGCGTCACCCGAGCCGTTCTGAAGTGCTGCGTAGCTTCCTGGACGATTAATCGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACC  >  NC_000913/3214827‑3215018

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.