New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3622466 =NA (NA)15 (0.190) 7/170 NT 100% coding (3275/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
?NC_000913 3622497 = 0 (0.000)coding (3306/4236 nt) rhsB Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor

CAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCC  >  NC_000913/3622399‑3622595
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taGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTgg                                                                                                   >  1:974771/2‑100 (MQ=18)
caggccgcaggaggccagccagcggcggctttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcggg                                                                                                   <  2:1277008‑M2/2‑1 (MQ=255)
caggccgcacgttgtcagccagcggcggctttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcgg                                                                                                    <  1:164221‑M2/1‑1 (MQ=255)
caggccgcacgatgccagccagcggcggctttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcggg                                                                                                   <  2:1001248‑M2/2‑1 (MQ=255)
caggccgcacgatgccagccagcggcggctttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcggg                                                                                                   <  2:573412‑M2/2‑1 (MQ=255)
caggccgcacgatgccagccagcggcggctttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcggg                                                                                                   <  2:479775‑M2/2‑1 (MQ=255)
caggccgcacgatgccagccagcggcggctttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcggg                                                                                                   <  2:1712521‑M2/2‑1 (MQ=255)
caggccgcacgatgccagccagcggcggctttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcggg                                                                                                   >  2:477415‑M2/99‑100 (MQ=255)
caggccgcaccatgccagccagcggcggctttcctcactcacccggtcagccaggatttcactttctagtcggtctagcatctgcaccagcaccggcggg                                                                                                   <  2:1475257‑M2/2‑1 (MQ=255)
 aggccgcacgatgccagccagcggcggctttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcgGGa                                                                                                  <  2:403977‑M2/3‑1 (MQ=255)
 aggccgcacgatgccagccagcggcggctttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcgGGa                                                                                                  <  1:1800062‑M2/3‑1 (MQ=255)
 aggccgcacgatgccagccagcggcggctttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcgGGa                                                                                                  >  1:776351‑M2/98‑100 (MQ=255)
 aggccgcacgatgccagccagcggcggctttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcgGGa                                                                                                  <  1:1677030‑M2/3‑1 (MQ=255)
 aggccgcacgatgccagccagcggcggctttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcgGGa                                                                                                  <  1:1504391‑M2/3‑1 (MQ=255)
 aggccgcacgatgccagccagcggcggctttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcgGGa                                                                                                  >  1:1426479‑M2/98‑100 (MQ=255)
 aggccgcacgatgccagccagcggcggctttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcgGGa                                                                                                  <  1:1370655‑M2/3‑1 (MQ=255)
 aggccgcacgatgccagccagcggcggctttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcgGGa                                                                                                  <  1:1247564‑M2/3‑1 (MQ=255)
  ggccgcacgatggcagccagcggcggctgtcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcggg                                                                                                   <  1:1232695‑M2/2‑1 (MQ=255)
  ggccgcacgatgccagccagcggcggctttcctcactcacccggtcagcccggatttcactttccagccggtcgagcatctgcaccagcaccggcggg                                                                                                   <  2:1537943‑M2/2‑1 (MQ=255)
  ggccgcacgatgccagccagcggcggctttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcactagcaccggcgGGaa                                                                                                 >  2:423446‑M2/97‑100 (MQ=255)
  ggccgcacgatgccagccagcggcggctttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcgGGaa                                                                                                 >  1:901473‑M2/97‑100 (MQ=255)
  ggccgcacgatgccagccagcggcggctttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcgGGaa                                                                                                 >  2:1198187‑M2/97‑100 (MQ=255)
  ggccgcacgatgccagccagcggcggctttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcgGGaa                                                                                                 >  1:1567107‑M2/97‑100 (MQ=255)
  ggccgcacgatgccagccagcggcggctttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcgGGaa                                                                                                 >  1:1582025‑M2/97‑100 (MQ=255)
  ggccgcacgatgccagccagcggcggctttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcgGGaa                                                                                                 >  2:1679393‑M2/97‑100 (MQ=255)
  ggccgcacgatgccagccagcggcggctttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcgGGaa                                                                                                 <  2:1772636‑M2/4‑1 (MQ=255)
  ggccgcacgatgccagccagcggcggctttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcgGGaa                                                                                                 >  1:451797‑M2/97‑100 (MQ=255)
  ggccgcacgatgccagccagcggcggctttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcgGGaa                                                                                                 >  2:1949835‑M2/97‑100 (MQ=255)
  ggccgcacgatgccagccagcagaggctttactcactcacccggtcagccaggatttcactttccagccggacgagcatcagcaccagcaacggcgggga                                                                                                 >  2:260296‑M2/97‑98 (MQ=255)
  ggccgcacgatgccagccaacagcggctttcctcactcacccggtcagccaggctttcaatttccagccggtcgagcatctgcaccagcaccggcgGGaa                                                                                                 >  2:588273‑M2/97‑100 (MQ=255)
   gccgcacgatgccagccagcggcggctttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatttgcaccagcaccggcgGGa                                                                                                  <  2:438768‑M2/3‑1 (MQ=255)
   gccgcacgatgccagccagcggcggctttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcgGGaa                                                                                                 >  1:787993‑M2/96‑99 (MQ=255)
    ccgcacgatgccagccagcggcggctttcctcactcacccggtcagccaggatttcactttccagccggtcgagcatctgcaccagcaccggcgGGa                                                                                                  <  2:2070170‑M2/3‑1 (MQ=255)
                                                agccaggatatcactttccagccgatcgagcatctgcaccagcaccggcgGGAAAGCGAAATCCTGGCTGACCGGCTGAGTGAGGAAAGCCGCCgctggc                                                   >  2:1227149‑M2/51‑100 (MQ=255)
                                                          tcactttccagccggtcgagcatctgcaccagcaccggcgGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTg                                         >  1:964776‑M2/41‑100 (MQ=255)
                                                            cactttccagccggtcgagcatctgcaccgtgccggcgGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCg                                       >  2:2170206‑M2/39‑100 (MQ=255)
                                                            actttccagccggtctagcatctgcaacagcaccggcgGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCg                                       >  2:1553837‑M2/39‑100 (MQ=255)
                                                            actttccagccggtcgagcatctgcaccagcaccggcgGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCg                                       >  1:1246444‑M2/39‑100 (MQ=255)
                                                            actttccagccggtcgagcatctgcaccagcaccggcgGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCg                                       >  1:909227‑M2/39‑100 (MQ=255)
                                                             ntttccagccggtcgagcatctgcaccagcaccggcgGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCgg                                      >  1:2166752‑M2/38‑100 (MQ=255)
                                                             ctttccagccggtcgagcatctgcaccagcaccggcgGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCgg                                      >  1:1130453‑M2/38‑100 (MQ=255)
                                                             actttccagccggtcgagcatctgcaccgtgccggctGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCgg                                      >  2:1211611‑M2/38‑100 (MQ=255)
                                                               ttccagccggtcgagcatctgcaccagcaccggcgGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGcc                                    >  1:1243644‑M2/36‑100 (MQ=255)
                                                                ttccagccggtcgagcatctgcaccgtgccggcgGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCt                                   >  1:1965289‑M2/35‑100 (MQ=255)
                                                                 tccagccggtcgagcatctgcaccgtgccggcgGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTg                                  >  1:1411978‑M2/34‑100 (MQ=255)
                                                                 ccagccggtcgagcatctgcaccagcaccggctGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTg                                  >  1:999318‑M2/34‑100 (MQ=255)
                                                                  cagccggtcgagcatctgcaccagcaccggcgGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGa                                 >  1:918090‑M2/33‑100 (MQ=255)
                                                                    agccggtcgagcatctgcaccgtgccggcgGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGAcc                               >  1:2066571‑M2/31‑100 (MQ=255)
                                                                             ggTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAG                      <  2:945065‑M2/100‑1 (MQ=255)
                                                                             ggTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAG                      >  1:1719879‑M2/1‑100 (MQ=255)
                                                                             ggTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAG                      >  2:1991720‑M2/1‑100 (MQ=255)
                                                                             ggTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAG                      <  2:161304‑M2/100‑1 (MQ=255)
                                                                             ggTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAG                      <  2:1498107‑M2/100‑1 (MQ=255)
                                                                               tGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGAT                    <  1:1966644‑M2/100‑1 (MQ=255)
                                                                               tGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGAT                    <  1:928961‑M2/100‑1 (MQ=255)
                                                                                gCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATG                   >  1:636965‑M2/1‑100 (MQ=255)
                                                                                gCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATG                   >  1:1698150‑M2/1‑100 (MQ=255)
                                                                                gCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATG                   <  2:687575‑M2/100‑1 (MQ=255)
                                                                                  aGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGC                  <  1:725599‑M2/99‑1 (MQ=255)
                                                                                                  GGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGAccc  >  2:1740931‑M2/1‑99 (MQ=255)
                                                                                                  GGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGAccc  >  1:1370081‑M2/1‑99 (MQ=255)
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CAGCGCCGCAGCCTGGCGGATGCCCTTCAGCAGTCCGGCGGCGAAGACGGTGGCAGTGTGGTGTTCCCGCCGGTGCTGGTGCAGATGCTCGACCGGCTGGAAAGTGAAATCCTGGCTGACCGGGTGAGTGAGGAAAGCCGCCGCTGGCTGGCATCGTGCGGCCTGACCGTGGAGCAGATGCAAAACCAGATGGACCC  >  NC_000913/3622399‑3622595

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.