New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4171803	71 (0.870)	29 (0.360)	9/174	NT	29.5%	intergenic (+47/‑254)	rrfB/murB	5S ribosomal RNA of rrnB operon/UDP‑N‑acetylenolpyruvoylglucosamine reductase, FAD‑binding
	?	NC_000913	= 4213162	NA (NA)					intergenic (+3/‑72)	rrfE/yjaA	5S ribosomal RNA of rrnE operon/stress‑induced protein

ACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGG‑CCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTC  >  NC_000913/4213068‑4213261                                                                                               |                                                                                                     aCCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAg                                                                                                 <  2:810714/100‑1 (MQ=11) aCCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAg                                                                                                 <  2:1553137/100‑1 (MQ=11)  ccTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGa                                                                                                >  2:138619/1‑100 (MQ=31)       ccccATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAAc                                                                                           >  1:775480/1‑100 (MQ=38)       ccccATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTAGCAGGCATCAAATTAGAAAAAc                                                                                           >  1:448814/1‑100 (MQ=255)        cacATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAAcc                                                                                          >  1:1522650/3‑100 (MQ=38)          cATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAAcccc                                                                                        <  1:1736557/100‑1 (MQ=40)           aTGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCg                                                                                       >  2:1695665/1‑100 (MQ=255)               cGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTcc                                                                                   <  2:1466682/100‑1 (MQ=255)               cGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTcc                                                                                   >  2:730638/1‑100 (MQ=255)               cGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTcc                                                                                   <  1:1459191/100‑1 (MQ=255)               cGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTcc                                                                                   <  1:1617127/100‑1 (MQ=255)                  aCTCAGAAGTGAAACGCCGTAGAGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATa                                                                                <  2:1185240/100‑1 (MQ=255)                   cTCAGAAGTGAAACGCCGTAGCGGCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGt                                                                                     <  2:161115/94‑1 (MQ=255)                    tCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAg                                                                              <  2:373991/100‑1 (MQ=255)                    tCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAg                                                                              >  1:1082380/1‑100 (MQ=255)                    tCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAg                                                                              >  1:104630/1‑100 (MQ=255)                     cAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTATAAAAACCCCGGTCCATAAgg                                                                             >  2:1510154/1‑100 (MQ=255)                        aaGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGG‑CCg                                                                         >  2:620052/1‑100 (MQ=255)                           tGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGG‑CCgggg                                                                      >  2:1162244/1‑100 (MQ=255)                            gAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGG‑CCggg                                                                       >  2:875816/1‑98 (MQ=255)                            gAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGG‑CCGGGGt                                                                     >  1:1331721/1‑100 (MQ=255)                            gAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTACCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAAAACCGGTCCATAAGG‑CCggg                                                                       >  2:2239899/1‑98 (MQ=255)                             aaaCGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGG‑CCGGGGtt                                                                    >  2:1991189/1‑100 (MQ=255)                                cGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGG‑CCGGGGttttt                                                                 <  1:1877975/100‑1 (MQ=255)                                 tccGGAGCGCCTATGGTATTGTGGGGTCTCCTCAGGCGAGAGTAGGGAACGGCTAGGCATCAAATTATAAAAACCCCGGTCCATAAGG‑CCGGGGtttttt                                                                <  2:2142975/99‑1 (MQ=18)                                 gCCGTAGCGCCGATGGTAGTGTGGGGTTTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGG‑CCTTATGGACCGGGGtttttc                                                                <  2:627265/100‑2 (MQ=14)                                 gCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGG‑CCGGGGtttttt                                                                >  2:2000503/1‑100 (MQ=255)                                  ccGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGG‑CCGGGGTTTTTTg                                                               <  1:88364/100‑1 (MQ=255)                                  ccGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGG‑CCGGGGTTTTTTg                                                               >  2:521531/1‑100 (MQ=255)                                   cGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGG‑CCGGGGTTTTTTGc                                                              <  2:1691363/100‑1 (MQ=255)                                   cGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGG‑CCGGGGTTTTTTGc                                                              <  1:2000517/100‑1 (MQ=255)                                    gTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGG‑CCTTATGGACCGGGGtttttctaa                                                             <  2:6990/100‑5 (MQ=14)                                     tAGCGTCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGG‑CCGGGGTTTTTTGCat                                                            <  1:14698/100‑1 (MQ=255)                                     tAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGG‑CCGGGGTTTTTTGCat                                                            >  2:736481/1‑100 (MQ=255)                                               ggTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGG‑CCGGGGTTTTTTGCATATCAattatt                                                  <  2:104630/100‑1 (MQ=255)                                               ggTAGTGTGGGGTCTACCTATGCGAGAGTAGGGAAGTGTCAGGTATCAAATTAGAAAAACCCAGGTCTATAAGG‑CCGGGGTTTTTTGCATATTAattatt                                                  <  2:1082378/100‑1 (MQ=25)                                                gTAGTGTGGGATCTCCCCATGCGAGAGTAGGGAAATGCCAGGCATCAAATTAGAAAAACACCGGTCCATAAGG‑CCGGGGTTTTTTGCATATCAATTAttt                                                 >  2:454100/1‑100 (MQ=255)                                                 tAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGG‑CCGGGGTTTTTTGCATATCAATTATTTg                                                <  1:66304/100‑1 (MQ=255)                                                 tAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGG‑CCGGGGTTTTTTGCATATCAATTATTTg                                                <  1:1710625/100‑1 (MQ=255)                                                   gtgtGGGGTCTCTCCATGCGAGAGTAGGGAACTGGCATGCATCATATTATAAAATCCCCTTTCCATAAGT‑CCGTGGTTTTTTGCATATCAATGATTTg                                                <  2:2109178/98‑1 (MQ=18)                                                   gtgtGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGG‑CCGGGGTTTTTTGCATATCAATTATTTGCa                                              >  1:466809/1‑100 (MQ=255)                                                   gtgtGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGG‑CCGGGGTTTTTTGCATATCAATTATTTGCa                                              <  1:387553/100‑1 (MQ=255)                                                   gtgtGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGG‑CCGGGGTTTTTTGCATATCAATTATTTGCa                                              <  2:126044/100‑1 (MQ=255)                                                    tgtgGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGG‑CCGGGGTTTTTTGCATATCAATTATTTGCat                                             <  2:231213/100‑1 (MQ=255)                                                    tgtgGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGG‑CCGGGGTTTTTTGCATATCAATTATTTGCat                                             >  2:931971/1‑100 (MQ=255)                                                    tgtgGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGG‑CCGGGGTTTTTTGCATATCAATTATTTGCat                                             <  1:338213/100‑1 (MQ=255)                                                     gtgGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTATAAAAACCCCGGTCCATAAGG‑CCGGGGTTTTTTGCATATCAATTATTTGCatg                                            <  1:1510164/100‑1 (MQ=255)                                                      tgGGGTCTCCCCATGCGAGAGTAGGGAACTACCAGGCCTCAAACTAGAAAACCCCCGGTCCATAAAG‑CCCGCGTCGTCCACCTATCAATTCTTTGCat                                             >  2:1866085/1‑98 (MQ=12)                                                       ggggTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGG‑CCGGGGTTTTTTGCATATCAATTATTTGCatgat                                          <  2:750723/100‑1 (MQ=255)                                                       ggggTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGG‑CCGGGGTTTTTTGCATATCAATTATTTGCatgat                                          <  2:1331715/100‑1 (MQ=255)                                                       ggggTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGG‑CCGGGGTTTTTTGCATATCAATTATTTGCatgat                                          <  2:1877037/100‑1 (MQ=255)                                                         ggTCTCCCCATGCGAGAGTAGGGAACTGCCTGGAATCAAATTAGAAAAACCCCGGTCCATAAGG‑CCGGGGTTTTTTGCATATCAATTATGTGCAtgatga                                        >  2:1474656/1‑100 (MQ=255)                                                            ctcCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGG‑CCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAgg                                     <  1:2198550/100‑1 (MQ=255)                                                            ctcCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGG‑CCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAgg                                     <  2:69819/100‑1 (MQ=255)                                                             tcCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGG‑CCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAggg                                    >  2:618387/1‑100 (MQ=255)                                                             tcCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGG‑CCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAggg                                    >  1:942853/1‑100 (MQ=255)                                                              ccccATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGG‑CCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGa                                   >  2:523544/1‑100 (MQ=255)                                                                   ngCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGG‑CCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAAtctc                              >  2:20904/2‑100 (MQ=255)                                                                    ttccgatctgggAACTGCCAGGCATCAAACTAGAAAAACCCCGGTCCATAAGG‑CCGGGGTTTTTTGTATATCAATTATTTGCATGATGAAGGGAATCTCa                             <  2:1345521/91‑1 (MQ=255)                                                                    gCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGG‑CCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCa                             <  1:1474666/100‑1 (MQ=255)                                                                    gCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGG‑CCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCa                             >  1:139064/1‑100 (MQ=255)                                                                    gCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGG‑CCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCa                             <  2:1095487/100‑1 (MQ=255)                                                                     cGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGG‑CCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCAt                            >  1:452052/1‑100 (MQ=255)                                                                         agTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGG‑CCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCa                        >  1:2113203/1‑100 (MQ=255)                                                                          gTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGG‑CCGGGGTTTTTTGCATATCAATTATTTGCATGATGAGGGGAATCTCATGTCAg                       <  1:543009/100‑1 (MQ=255)                                                                          gTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGG‑CCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCa                        >  2:538376/1‑99 (MQ=255)                                                                          gTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGG‑CCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAg                       >  1:787585/1‑100 (MQ=255)                                                                            aGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGG‑CCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGtt                     >  2:763373/1‑100 (MQ=255)                                                                            aGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGG‑CCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGtt                     >  1:978377/1‑100 (MQ=255)                                                                             gggAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGG‑CCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCaagatcggaa                    >  1:1345527/1‑91 (MQ=255)                                                                             gggAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGG‑CCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTc                    >  2:613446/1‑100 (MQ=255)                                                                             gggAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGG‑CCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTc                    >  2:1805922/1‑100 (MQ=255)                                                                             gggAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGG‑CCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTc                    >  1:620674/1‑100 (MQ=255)                                                                             gggAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGG‑CCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTc                    >  2:1674065/1‑100 (MQ=255)                                                                              ggAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGG‑CCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCt                   >  2:1194406/1‑100 (MQ=255)                                                                                aaCTCCCAGGAATGAAATGAGAAAGAGCCCGTTCCATAAGG‑CCGGGGTTTTTTTCATAGCAAGTATTTGCATGATGAAGGGAAGCTCATGTCAGTTCTg                  <  2:629728/99‑1 (MQ=255)                                                                                 aCTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATCAGG‑CCGGGGTTTATTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGttattta                <  2:656718/100‑6 (MQ=255)                                                                                 aCTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGG‑CCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGta                <  1:887970/100‑1 (MQ=255)                                                                                  cTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGG‑CCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGtat               >  2:872448/1‑100 (MQ=255)                                                                                   tgtcAGGCATTAAATTAGAAAAACACCGGTCCACAAGG‑CCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGtata              <  1:1336214/97‑1 (MQ=255)                                                                                    gCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGG‑CCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTatat             >  1:1596370/1‑100 (MQ=255)                                                                                     ccAGGCATCAAATTAGAAAAACCCCGGTCCATAAGG‑CCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTatat             >  1:1051040/1‑99 (MQ=255)                                                                                     ccAGGCATCAAATTAGAAAAACCCCGGTCCATAAGG‑CCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATc            <  2:826812/100‑1 (MQ=255)                                                                                      cAGGCATCAAATTAGAAAAACCCCGGTCCATAAGG‑CCTGGGTTTTTTGCATATCAATTATTTGCATGATGAATGGAATTTCATGTCAGTTCTGTATATc            <  2:759347/99‑1 (MQ=255)                                                                                       aGGTATCAAATTAGAAAATCCCCGGTACATAAGG‑GCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATc            <  2:1809033/98‑1 (MQ=255)                                                                                       aGGCATCAAATTAGAAAAACCCCGGTCCATAAGG‑CCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATc            >  2:1633861/1‑98 (MQ=255)                                                                                       aGGCATCAAATTAGAAAAACCCCGGTCCATAAGG‑CCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCa          >  1:864835/1‑100 (MQ=255)                                                                                       aGGCATCAAATCAGAAAAACCCCGGTCCATAAGG‑CCGGGGTTTTTTGCATATCAATTATTTCCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCa          <  1:195375/100‑1 (MQ=255)                                                                                          cATCAAATTAGAAAAACCCCGGTCCATAAGG‑CCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAAt       >  1:526555/1‑100 (MQ=255)                                                                                           aTCAAATTAGAAAAACCCCGGTCCATAAGG‑CCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAAtt      <  1:625045/100‑1 (MQ=255)                                                                                           aTCAAATTAGAAAAACCCCGGTCCATAAGG‑CCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAAtt      >  2:1464305/1‑100 (MQ=255)                                                                                            tCAAATTAGAAAAACCCCGGTCCATAAGG‑CCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATtc     >  2:1236181/1‑100 (MQ=255)                                                                                             cAAATTAGAAAAACCCCGGTCCATAAGG‑CCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATtcg    >  2:755210/1‑100 (MQ=255)                                                                                             cAAATTAGAAAAACCCCGGTCCATAAGG‑CCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATtcg    >  2:1137398/1‑100 (MQ=255)                                                                                              aaaTTAGAAAAACCCCGGTCCATAAGG‑CCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGCATCTCATGTCAGTTCTGTATATCCAAATtcgt   >  1:587981/1‑100 (MQ=255)                                                                                              aaaTTAGAAAAACCCCGGTCCATAAGG‑CCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAAtt      >  1:171602/1‑97 (MQ=255)                                                                                               aaTTAGAAAAACCCCGGTCCATAAGG‑CCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATtcgtc  >  1:1332871/1‑100 (MQ=255)                                                                                               |                                                                                                     ACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATTAGAAAAACCCCGGTCCATAAGG‑CCGGGGTTTTTTGCATATCAATTATTTGCATGATGAAGGGAATCTCATGTCAGTTCTGTATATCCAAATTCGTC  >  NC_000913/4213068‑4213261

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.