New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4323250 =NA (NA)5 (0.070) 4/164 NT NA noncoding (5/87 nt) REP324 (repetitive extragenic palindromic) element; contains 2 REP sequences REP324 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 4323280 = NA (NA)noncoding (35/87 nt) REP324 (repetitive extragenic palindromic) element; contains 2 REP sequences REP324 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 104 total aligned reads displayed.

GAAGCGAGAACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCGCGCTTAGCGCGT  >  NC_000913/4323182‑4323379
                                                                                                  |                                                                                                   
gcggtgcagtaaatcgtaggtcggataagacgccccggcgtcgcatccgacaatgtgcaggcgttgatGCCGGATAAGGTGCTTGCACCGCATCCGGCAt                                                                                                    >  1:826035‑M1/69‑100 (MQ=255)
gAAGCGAGAACCAACTGCGCTTGGGTGGGGCGATGGTGGTGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCAt                                                                                                    >  2:1384379/1‑100 (MQ=255)
 aaGCGAGAACCAGCTGCGCTTGGGTGGGGCGATGGTTATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATc                                                                                                   >  1:1578160/1‑100 (MQ=255)
  aGCGAGAACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCa                                                                                                  >  1:860563/1‑100 (MQ=255)
   gtgcagtaaatcgtaggtcggataagacgccccggcgtcgcatccgacaatgtgcaggcgttgatGCCGGATAAGGTGCTTGCACCGCATCCGGCATCaa                                                                                                 >  2:1024828‑M1/66‑100 (MQ=255)
    tgcagtaaatcgtaggtcggataagacgccccggcgtcgcatccgacaatgtgcaggcgttgatgccggataaggtgcttgcaccgcatccggcATCAAc                                                                                                <  1:2198146‑M2/6‑1 (MQ=255)
    tgcagtaaatcgtaggtcggataagacgccccggcgtcgcatccgacaatgtgcaggcgttgatGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAAc                                                                                                >  1:1161778‑M1/65‑100 (MQ=255)
    cGAGAACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAAc                                                                                                >  2:372326/1‑100 (MQ=255)
    cGAGAACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAAc                                                                                                >  2:1448615/1‑100 (MQ=255)
     gagaACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACg                                                                                               <  2:1892498/100‑1 (MQ=255)
     gagaACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACg                                                                                               >  2:189678/1‑100 (MQ=255)
      cagtaaatcgtaggtcggataagacgccccggcgtcgcatccgacaatgtgcaggcgttgatGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGc                                                                                              >  1:862582‑M1/63‑100 (MQ=255)
       gaACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGcc                                                                                             <  2:804975/100‑1 (MQ=255)
       gaACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGcc                                                                                             >  1:481460/1‑100 (MQ=255)
       gaACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGcc                                                                                             <  1:1820219/100‑1 (MQ=255)
         aCCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCt                                                                                            <  1:1362286/99‑1 (MQ=255)
         aCCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTg                                                                                           >  1:1040016/1‑100 (MQ=255)
           cAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGca                                                                                         >  1:81608/1‑100 (MQ=255)
             gCTGGGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGcaca                                                                                       <  2:86956/100‑1 (MQ=255)
              cTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACAt                                                                                      >  2:1590528/1‑100 (MQ=255)
               tGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACAtt                                                                                     >  2:1980292/1‑100 (MQ=255)
                 cgcTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGt                                                                                   >  2:2022844/1‑100 (MQ=255)
                    ttGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCg                                                                                 <  2:1163912/99‑1 (MQ=255)
                       ggtgggGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATg                                                                             >  2:2162593/1‑100 (MQ=255)
                       ggtgggGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATg                                                                             <  2:1011690/100‑1 (MQ=255)
                           gggCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGAc                                                                         >  1:584337/1‑100 (MQ=255)
                            ggCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACg                                                                        >  2:1615522/1‑100 (MQ=255)
                            ggCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACg                                                                        >  2:1229054/1‑100 (MQ=255)
                             gCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGc                                                                       >  1:2077045/1‑100 (MQ=255)
                              cGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGcc                                                                      >  2:1605669/1‑100 (MQ=255)
                               gatggtgatggtTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGcc                                                                      <  1:1306883/99‑1 (MQ=255)
                                  ggtgatggtTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCgggg                                                                  <  2:2212219/100‑1 (MQ=255)
                                  ggtgatggtTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCgggg                                                                  >  1:1226884/1‑100 (MQ=255)
                                  ggtgatggtTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCgggg                                                                  <  1:1657494/100‑1 (MQ=255)
                                  ggtgatggtTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCgggg                                                                  <  2:1146304/100‑1 (MQ=255)
                                     gatggtTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGt                                                               >  1:2107086/1‑100 (MQ=255)
                                       tggtTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCt                                                             >  2:124634/1‑100 (MQ=255)
                                       tggtTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCt                                                             <  1:2051234/100‑1 (MQ=255)
                                        ggtTTGCATGTTTGGCTCCGGTCTGTCGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCtt                                                            >  2:881191/1‑100 (MQ=255)
                                        ggtTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCtt                                                            >  2:37423/1‑100 (MQ=255)
                                        ggtTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCtt                                                            >  2:398787/1‑100 (MQ=255)
                                         gtTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTa                                                           >  1:1578395/1‑100 (MQ=255)
                                          tttGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTAt                                                          >  2:595627/1‑100 (MQ=255)
                                           ttGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATc                                                         <  1:1949933/100‑1 (MQ=255)
                                           ttGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATc                                                         <  1:1372469/100‑1 (MQ=255)
                                           ttGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATc                                                         >  2:1445098/1‑100 (MQ=255)
                                            tGCATGTTTGGCTCCGGTCTGTAGGCCTGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCTGATTCGACGCCGGTGCGTCTTATcg                                                        <  2:132525/100‑2 (MQ=39)
                                            tGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATcn                                                        <  2:801916/100‑2 (MQ=255)
                                            tGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATcc                                                        <  1:1384385/100‑1 (MQ=255)
                                            tGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATcc                                                        <  2:1399470/100‑1 (MQ=255)
                                             gCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCg                                                       >  1:392375/1‑100 (MQ=255)
                                               aTGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGAc                                                     >  2:231399/1‑100 (MQ=255)
                                               aTGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGAc                                                     <  2:1446781/100‑1 (MQ=255)
                                                tGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGAcc                                                    >  1:1821963/1‑100 (MQ=255)
                                                  tttGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTa                                                  >  1:529251/1‑100 (MQ=255)
                                                  tttGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATAAGTCGCCCCGGCGTCGCATCCGAcaat                                                  <  2:851410/100‑4 (MQ=25)
                                                     ggCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGa                                               >  2:587241/1‑100 (MQ=255)
                                                     ggCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGa                                               >  1:1785294/1‑100 (MQ=255)
                                                     ggCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGa                                               >  2:332751/1‑100 (MQ=255)
                                                      gCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCAACCTACGAt                                              >  1:1316090/1‑100 (MQ=255)
                                                         ccGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTa                                           >  1:387191/1‑100 (MQ=255)
                                                          cGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTAc                                          <  2:860563/100‑1 (MQ=255)
                                                          cGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTAc                                          >  1:1207831/1‑100 (MQ=255)
                                                           ggTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACt                                         <  1:1980306/100‑1 (MQ=255)
                                                            gcgttgatgccggatgcggtgcaagcaccttatccggcATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTg                                        >  1:862582‑M2/39‑100 (MQ=255)
                                                            gTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTg                                        >  1:745047/1‑100 (MQ=255)
                                                              gttgatgccggatgcggtgcaagcaccttatccggcATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCa                                      >  1:1161778‑M2/37‑100 (MQ=255)
                                                              gttgatGCCGGATGCGGTGCAAGCACCTTATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCa                                      <  1:2198146‑M1/94‑1 (MQ=255)
                                                               ttgatgccggatgcggtgcaagcaccttatccggcATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCAc                                     >  2:1024828‑M2/36‑100 (MQ=255)
                                                                gTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCAcc                                    <  1:1638570/100‑1 (MQ=255)
                                                                 tAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCg                                   >  1:2098103/1‑100 (MQ=255)
                                                                  aGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGc                                  >  2:2031568/1‑100 (MQ=255)
                                                                  aGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACACCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGc                                  >  1:1329207/1‑100 (MQ=255)
                                                                   ggCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTagatcggaaga                                 >  2:1554225/1‑90 (MQ=255)
                                                                   aGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCTACGCCGTGTCGTCTTATCCGACCTACGATTTACTacac                                     <  1:1254477‑M1/95‑1 (MQ=255)
                                                                    GCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCtt                                <  2:1472187‑M1/100‑1 (MQ=255)
                                                                     CCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCttt                               >  1:766801‑M1/1‑100 (MQ=255)
                                                                     CCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCttt                               >  2:53099‑M1/1‑100 (MQ=255)
                                                                         ATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTAc                             >  1:51079‑M1/1‑98 (MQ=255)
                                                                         ATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTc                           <  2:1415913‑M1/100‑1 (MQ=255)
                                                                            aGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCAcc                        <  1:1248116/100‑1 (MQ=255)
                                                                             ggTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCAcc                        >  1:216845/1‑99 (MQ=255)
                                                                             ggTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCg                       >  2:1840751/1‑100 (MQ=255)
                                                                               tGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGa                      <  1:568859/99‑1 (MQ=255)
                                                                                 cTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACt                   >  2:1713650/1‑100 (MQ=255)
                                                                                 cTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACt                   >  1:2102491/1‑100 (MQ=255)
                                                                                 cTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACt                   <  2:2080779/100‑1 (MQ=255)
                                                                                 cTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACt                   >  1:27014/1‑100 (MQ=255)
                                                                                   tGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCa                 >  1:1435153/1‑100 (MQ=255)
                                                                                     cACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATc               >  1:932136/1‑100 (MQ=255)
                                                                                       ccGCATCCGGTATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTCCTGCTCCGCTTTACTCACCGAACt                   <  2:1843016/94‑1 (MQ=255)
                                                                                        cGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATcgcg            <  1:1820322/100‑1 (MQ=255)
                                                                                         gCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCgcgc           >  2:859877/1‑100 (MQ=255)
                                                                                          cATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCGCGCt          <  1:384881/100‑1 (MQ=255)
                                                                                            tgcggcATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCGCGCTTa        >  1:1509808‑M2/7‑100 (MQ=255)
                                                                                               ggcATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCACTTTACTCACCGAACTCATCGCGCTTAg       >  1:175455‑M2/4‑98 (MQ=255)
                                                                                                 cATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCGCGCTTAGcgcg   >  1:442622‑M2/2‑100 (MQ=255)
                                                                                                  aTCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCGCGCTTAGCGCgt  <  1:2162608/100‑1 (MQ=255)
                                                                                                  aTCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCGCGCTTAGCGCgt  <  1:1561618/100‑1 (MQ=255)
                                                                                                  aTCAACGCATGCACATTGTCGGATGCGACGCCGGGTCTTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCTCCGAACTCAACGCGCTAAGcgcga  <  2:168328/100‑2 (MQ=38)
                                                                                                  |                                                                                                   
GAAGCGAGAACCAGCTGCGCTTGGGTGGGGCGATGGTGATGGTTTGCATGTTTGGCTCCGGTCTGTAGGCCGGATAAGGTGCTTGCACCGCATCCGGCATCAACGCCTGCACATTGTCGGATGCGACGCCGGGGCGTCTTATCCGACCTACGATTTACTGCACCGCTTTACTCACCGAACTCATCGCGCTTAGCGCGT  >  NC_000913/4323182‑4323379

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.