| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4587878 | NA (NA) | 8 (0.110) | 5/162 | NT | NA | noncoding (7/27 nt) | REP348 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP348 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 4587891 | NA (NA) | noncoding (20/27 nt) | REP348 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP348 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
TCGAAAACGAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATGCGGCTGCGCCTTATCCGGCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTTCCTCCGGCAGCTGGATCCCGATAAACACCATCGTGCTATGC > NC_000913/4587793‑4587987 | tCGAAAACGAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATGCGGCTGCGCCTTa < 1:2174916‑M2/100‑2 (MQ=255)tCGAAAACGAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATGCGGCTGCGCCTTa > 1:856664‑M2/1‑99 (MQ=255) cGAAAACGAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGACGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATGCGGCTGCGCCTTat < 1:1095521‑M2/100‑3 (MQ=255) gAAAACGAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTTAGTGAAATATCAGGCCGGATGCGGCTGCGCCTTatc > 2:1765302‑M2/1‑97 (MQ=255) gAAAACGAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATGCGGCTGCGCCTTatc < 2:1728580‑M2/100‑4 (MQ=255) aaaaCGAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATGCGGCTGCGCCTTatcc < 1:926601‑M2/100‑5 (MQ=255) aaCGAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATGCGGCTGCGCCTTatccgg < 2:1735147‑M2/100‑7 (MQ=255) aCGAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATGCGGCTGCGCCTTatccggc > 2:2140509‑M2/1‑93 (MQ=255) aCGAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATGCGGCTGCGCCTTatccggc > 2:292422‑M2/1‑93 (MQ=255) cGAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATGCGGCTGCGCCTTatccggcc > 1:1986775‑M2/1‑92 (MQ=255) aaGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATGCGGCTGCGCCTTATCCGGCCCa > 1:1820328/1‑100 (MQ=255) aGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATGCGGCTGCGCCTTATCCGGCCCATAAc > 1:824057/1‑100 (MQ=255) gggTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATGCGGCTGCGCCTTATCCGGCCCATAAccc < 2:1677500/100‑1 (MQ=255) gggTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATGCGGCTGCGCCTTATCCGGCCCATAAccc > 2:470343/1‑100 (MQ=255) ggTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATGTGGCTGCGCCTTATCCGGCCCATAAcccc > 2:836279/1‑100 (MQ=255) ggTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATGCGGCTGCGCCTTATCCGGCCCATAAcccc < 1:2185123/100‑1 (MQ=255) tcACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATGCGGCTGCGCCTTATCCGGCCCATAACCCCTTACTTc > 1:578402/1‑100 (MQ=255) tcACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATGCGGCTGCGCCTTATCCGGCCCATAACCCCTTACTTc < 2:824057/100‑1 (MQ=255) aCGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATGCGGCTGCGCCTTATCCGGCCCATAACCCCTTACTTCCt < 1:463939/100‑1 (MQ=255) cGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCCTGCAGGATGCGGCTGCGCCTTATCCGGCACATAACCCCTTACtt > 2:801736/1‑96 (MQ=255) cGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATGCGGCTGCGCCTTATCCGGCCCATAACCCCTTACTTCCTc > 2:1484569/1‑100 (MQ=255) tgttgAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATGCGGCTGCGCCTTATCCGGCCCATAACCCCTTACTTCCTCAAcc > 2:2179907/1‑100 (MQ=255) gttgAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATGCGGCTGCGCCTTATCCGGCCCATAACCCCTTACTTCCTCAAccc < 1:190743/100‑1 (MQ=255) ttgAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATGCGGCTGCGCCTTATCCGGCCCATAACCCCTTACTTCCTCAAcccc > 1:701635/1‑100 (MQ=255) ttgAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATGCGGCTGCGCCTTATACGGCCCATAACCCCTTACTTCCTCAAcccc > 2:134015/1‑100 (MQ=255) tgAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATGCGGCTGCGCCTTATCCGGCCCATAACCCCTTACTTCCTCAACCCCg > 1:546194/1‑100 (MQ=255) gAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATGCGGCTGCGCCTTATCCGGCCCATAACCCCTTACTTCCTCAACCCCGc < 2:1967329/100‑1 (MQ=255) ggTGTCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATGCGGCTGCGCCTTATCCGGCCCATAACCCCTTACTTCCTCAACCCCGCaa < 1:1136662/99‑1 (MQ=255) ggTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATGCGGCTGCGCCTTATCCGGCCCCTAACCCCTTACTTCCTCAACCCCACaaa > 1:154015/1‑100 (MQ=255) ggTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATGCGGCTGCGCCTTATCCGGCCCATAACCCCTTACTTCCTCAACCCCGCaaa > 1:481949/1‑100 (MQ=255) tGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATGCGGCTGCGCCTTATCCGGCCCATAACCCCTTACTTCCTCAACCCCGCAAACg < 1:1354817/100‑1 (MQ=255) ccGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATGCGGCTGCGCCTTATCCGGCCCATAACCCCTTACTTCCTCAACCCCGCAAACg > 2:575227/1‑98 (MQ=255) cGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATGCGGCTGCGCCTTATCCGGCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAg > 2:591557/1‑100 (MQ=255) gAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATGCGGCTGCGCCTTATCCGGCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGc < 1:288320/100‑1 (MQ=255) aaaCTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATGCGGCTGCGCCTTATCCGGCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGcc < 2:1673938/100‑1 (MQ=255) aCTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATGCGGCTGCGCCTTATCCGGCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCg < 1:309590/100‑1 (MQ=255) cTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATGCGGCTGCGCCTTATCCGGCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGa > 2:37192/1‑100 (MQ=255) tGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATGCGGCTGCGCCTTATCCGGCCCATAACCCCTTACTTCCTCACCCCCGCAAACGCAGCCCGaa < 2:926599/100‑1 (MQ=255) gATATGGACTATTTTGAGTGAAATATCAGGCCGGATGCGGCTGCGCCTTATCCGGCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAAtc < 2:650930/100‑1 (MQ=255) gATATGGACTATTTTGAGTGAAATATCAGGCCGGATGCGGCTGCGCCTTATCCGGCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAAtc < 2:763715/100‑1 (MQ=255) atGGACTATTTTGAGTGAAATATCAGGCCGGATGCGGCTGCGCCTTATCCGGCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATctct < 1:179777/100‑1 (MQ=255) tGGCCTATTTTGAGTAAAATAACAGAACGGATGCGGCTGCGCCTTATCCGGCCTATAACCACTTACTTGCTAAACCCCGCACACGccgacagatt > 2:483447/1‑86 (MQ=255) ggACTATTTTGAGTGAAATATCAGGCCGGATGCGGCTGCGCCTTATCCGGCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCtt > 1:1206629/1‑99 (MQ=255) tATTTTGAGTGAAATATCAGGCCGGATGCGGCTGCGCCTTATCCGGCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTtcctcc < 2:1852676/100‑1 (MQ=255) aTTTTGAGTGAAATATCAGGCCGGATGCGGCTGCGCCTTATCCGGCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTTCCTCCg > 2:1882184/1‑100 (MQ=255) aTTTTGAGTGAAATATCAGGCCGGATGCGGCTGCGCCTTATCCGGCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTTCCTCCg > 1:288698/1‑100 (MQ=255) ttttGAGTGAAATATCAGGCCGGATGCGGCTGCGCCTTATCCGGCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATctct > 1:603866/1‑92 (MQ=255) tttGAGTGAAATATCAGGCCGGATGCGGCTGCGCCTTATCCGGCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTTCCTCCGGc < 1:30107/100‑1 (MQ=255) ttGANTGNAATATCAGGCCGGATGCGGCTGCGCCTTATCTGGCCCATAACACCTTACTTCCTCAACCCCGCAGAAGCAGCCCGAATCTCTTCCTCCgg > 2:200754/1‑98 (MQ=255) ttGAGTGAAATATCAGGCCGAATGCGACTGCGCCTTatccggactgatatttcactcaaaatagtccatatccagtttcgtcaccttcaacaaacgtga < 2:711265‑M2/99‑64 (MQ=255) tGAGTGAAATATCAGGCCGGATGCGGCTGCGCCTTATCCGGCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTTCCTCCGGCa < 1:1430260/99‑1 (MQ=255) gTGAAATATCAGGCCGGATGCGGCTGCGCCTTatccggcctgatatttcactcaaaatagtccatatccagtttcggcaccttcaacaaacgttaagaaa < 1:79159‑M2/100‑69 (MQ=255) gTGAAATATCAGGCCGGATGCGGCTGCGCCTTatccggcctgatatttcactcaaaatagtccatatccagtttcggcaccttcaacaaacgtgaagaaa < 1:1693060‑M2/100‑69 (MQ=255) gTGAAATATCAGGCCGGATGCGGCTGCGCCTTATCCGGCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTTCCTCCGGCAGCt > 1:2065165/1‑99 (MQ=255) gTGAAATATCAGGCCGGATGCGGCTGCGCCTTATCCGGCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTTCCTCCGGCAGCTg > 1:301331/1‑100 (MQ=255) ctGAAATATCAGGCCGGATGCGGCTGCGCCTTATCCGGCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTTCCTCCGGCAGCTg < 1:1164914/99‑1 (MQ=255) atGAAATATAAGGCAGGATGCGGCTGCGCCTTATCCGGCCCATAACCCCTTACTTTCTCAACCCCTCAAACGCATCCCGAATCTCTTCCTCCGCCAGc > 2:1873378/2‑98 (MQ=255) tGAAATATCAGGCCGGATGCGGCTGCGCCTTATCCGGCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTTCCTCCGGCAGCTgg > 2:1109779/1‑100 (MQ=255) gAAATATCAGGCCGGATGCGGCTGCGCCTTATCCGGCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTTCCTCCGGCAGCTgag > 2:1164910/1‑98 (MQ=255) gAAATATCAGGCCGGATGCGGCTGCGCCTTATCCGGCCCATAACCCCTTACTTACTCAACCCAGCAACCGCAGCACGAATCTCTtcatcagacccatg > 1:1303981/1‑89 (MQ=255) gAAATATCAGGCCGGATACGGCTGCGCCTTATACGGCCCATAACCCGTTACTTCCTCCACACCACAAACGAAACACGAATCTCTTCCTCCCGCAGCTGGa > 2:845954/1‑100 (MQ=255) tatCAGGCCGGATGCGGCTGCGCCTTATCCGGCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTTCCTCCGGCAGCTGGATccc < 1:1866500/100‑1 (MQ=255) atCAGGCCGGATGCGGCTGCGCCTTatccggcctgatatttcactcaaaatagtccatatccagtttcggcaccttcaacaaacgtgaagaaacccctac < 1:57488‑M2/100‑76 (MQ=255) atCAGGCCGGATGCGGCTGCGCCTTATCCGGCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTTCCTCCGGCAGCTGGATCCCg < 1:767832/100‑1 (MQ=255) tCAGGCCGGATGCGGCTGCGCCTTATCCGGCCCATAGCCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTTCCTCCGGCAGCTGGATCCCGa < 1:1625365/100‑1 (MQ=255) cAGGCCGGATGCGGCTGCGCCTTatccggcctgatatttcactcaaaatagtccatatccagtttcggcaccttcaacaaacgtgaagaaacccctactt < 2:2061849‑M2/100‑78 (MQ=255) cAGGCCGGATGCGGCTGCGCCTTatccggcctgatatttcactcaaaatagtccatatccagtttcggcaccttcaacaaacgtgaagaaacccctactt < 2:645708‑M2/100‑78 (MQ=255) cAGGCCGGATGCGGCTGCGCCTTatccggcctgatatttcactcaaaatagtccatatccagtttcggcaccttcaacaaacgtgaagaaacccctactt < 1:1989400‑M2/100‑78 (MQ=255) cAGGCCGGATGCGGCTGCGCCTTATCCGGCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTTCCTCCGGCAGCTGGATCCCGAt > 2:594557/1‑100 (MQ=255) aGGCCGGATGCGGCTGCGCCTTATCCGGCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTTCCTCCGGCAGCTGGATCCCGAt < 2:2072119/99‑1 (MQ=255) ggCCGGATGCGGCTGCGCCTTATCCGGCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTTCCTCCGGCAGCTGGATCCCGATaa < 1:1139096/100‑1 (MQ=255) ggCCGGATGCGGCTGCGCCTTATCCGGCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTTCCTCCGGCAGCTGGATCCCGATaa > 1:1104952/1‑100 (MQ=255) ggCCGGATGCGGCTGCGCCTTATCCGGCCCATAACCCCCTACTTCCTCAACCCCGCCAACGCAGCCCGAATCTCTTCCACCGGCAGCAAGAAACCGATaa > 1:616015/1‑100 (MQ=255) gCCGGATGCGGCTGCGCCTTatccggcctgatatttcactcaaaatagtccatatccagtttcggcaccttcaacaaacgtgaagaaacccctacttcgt < 1:1726616‑M2/100‑81 (MQ=255) gCCGGATGCGGCTGCGCCTTATCCGGCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTTCCTCCGGCAGCTGGATCCCGATaaa < 1:765474/100‑1 (MQ=255) cGGATGCGGCTGCGCCTTATCCGGCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTTCCTCCGGCAGCTGGATCCCGATAAacn < 2:1913545/100‑2 (MQ=255) ggATGCGGCTGCGCCTTATCCGGCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTTCCTCCGGCAGCTGGATCCCGATAAacac > 1:722405/1‑100 (MQ=255) ggATGCGGCTGCGCCTTATCCGGCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTTCCTCCGGCAGCTGGATCCCGATAAaca > 1:674838/1‑99 (MQ=255) ggATGCGGCTGCGCCTTATCCGGCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTTCCTCCGGCAGCTGGATCCCGATAAaca < 1:1112367/99‑1 (MQ=255) aTGCGGCTGCGCCTTATCCGGCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTTCCTCCGGCAGCTGGATCTCGATAAACACCa > 1:694112/1‑100 (MQ=255) cGGCTGCGCCTTATCCGGTCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTTCCTCCGGCAGCTGGATCCCGATAAACACCATCg < 2:879114/100‑1 (MQ=255) ggCTGCGCCTTATCCGGCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTTCCTCCGGCAGCTGGATCCCGATAAACACCATc > 1:1285666/1‑98 (MQ=255) cTGCGCCTTATCCGGCCCATAACCCCTTACTTACTCAACCCCGCAAACGCAGCCCGAATCTATTCCTACGGCAGCTGGATGCCGATAAACACCATCgcg > 2:445499/1‑97 (MQ=255) tGCGACTTATCCGGCCCATAACCCCTTACTTCCTAAACCCCGCAAACGCAGCCTGAATCTCTTGCTCCGGCAGCTGGATCCCGATAAACAGAATCGTg < 2:1973213/98‑1 (MQ=255) cTTATCCGGCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTTCCTCCGGCAGCTGGATCCCGATAAACACCATCGTGCTATGc < 2:383372/99‑1 (MQ=255) | TCGAAAACGAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATGCGGCTGCGCCTTATCCGGCCCATAACCCCTTACTTCCTCAACCCCGCAAACGCAGCCCGAATCTCTTCCTCCGGCAGCTGGATCCCGATAAACACCATCGTGCTATGC > NC_000913/4587793‑4587987 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |