New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 58076859 (0.720)11 (0.160) 6/146 NT 17.3% intergenic (‑323/‑66) ylcI/nohD DUF3950 family protein, DLP12 prophage/DLP12 prophage; DNA packaging protein
?NC_000913 = 580793 57 (0.850)intergenic (‑348/‑41) ylcI/nohD DUF3950 family protein, DLP12 prophage/DLP12 prophage; DNA packaging protein

AGGTGTTTCCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCATTCA  >  NC_000913/580694‑580892
                                                                                                   |                                                                                                   
aGGTGTTTCCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCct                                                                                                     <  1:1371129/100‑1 (MQ=255)
aGGTGTTTCCGTTCTTCTTCATCGCAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCct                                                                                                     >  2:449532/1‑100 (MQ=255)
  gtgtTTCCGTTCTTCTTCGTCGTAACGTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTct                                                                                                   >  2:1773531‑M2/1‑98 (MQ=255)
   tgtTTCCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTctg                                                                                                  <  1:691501‑M2/100‑4 (MQ=255)
      ttCCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTTGCCTctgtcg                                                                                               <  1:134655‑M2/100‑7 (MQ=255)
      ttCCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTctgtcg                                                                                               >  1:1156888‑M2/1‑94 (MQ=255)
       tCCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTctgtcgt                                                                                              <  1:1876288‑M2/100‑8 (MQ=255)
       tCCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTctgtcgt                                                                                              <  2:1287348‑M2/100‑8 (MQ=255)
        ccGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTctgtcgtt                                                                                             >  1:1080382‑M2/1‑92 (MQ=255)
        ccGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTctgtcgtt                                                                                             <  1:1868551‑M2/100‑9 (MQ=255)
         cGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTctgtcgttt                                                                                            <  1:1809714‑M2/100‑10 (MQ=255)
         cGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTctgtcgttt                                                                                            >  2:551957‑M2/1‑91 (MQ=255)
           ttcttcttcGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCGTTTTGGCCTctgtcgtttcc                                                                                          >  2:1370444‑M2/1‑89 (MQ=255)
              ttctttGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTctgtcgtttcctt                                                                                        >  1:202670‑M2/1‑86 (MQ=255)
               tcttcGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTctgtcgtttcctttc                                                                                      >  2:1562403‑M2/1‑85 (MQ=255)
                 ttcGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTtctc                                                                                    <  1:2204867/100‑1 (MQ=255)
                 ttcGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTtctc                                                                                    <  1:734894/100‑1 (MQ=40)
                 ttcGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTtctc                                                                                    <  2:678044/100‑1 (MQ=40)
                       gtAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGtttt                                                                              <  2:1090601/100‑1 (MQ=255)
                       gtAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGtttt                                                                              <  2:1415765/100‑1 (MQ=255)
                       gtAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTGCTCTGtttt                                                                              <  2:1538287/100‑1 (MQ=255)
                        tAACTTAATGTATTTATTTGAAATACCCCCTGAAAAGAAAGGCAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTGTCTCTGtt                                                                                <  2:412270/97‑1 (MQ=255)
                         aaCTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACTACAGGTCTTGAAAGCAAGCTTTTTGGCCTCTGTCGTTTCCTTTctcta                                                                                  <  2:1223652/94‑2 (MQ=14)
                          aCTTAATGGATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTg                                                                            <  1:2228315/99‑1 (MQ=255)
                              aaTGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGt                                                                       <  1:1144120/100‑1 (MQ=255)
                               aTGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTg                                                                      <  1:1539555/100‑1 (MQ=255)
                               aTGTATTTATTTAAAATACCCCCTGAAAAGAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTgg                                                                     >  2:1624611/1‑100 (MQ=255)
                                tGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTgg                                                                     <  1:1938199/100‑1 (MQ=255)
                                  tatttattTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGaa                                                                   <  1:601130/100‑1 (MQ=255)
                                   atttatttAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAAt                                                                  <  1:1548516/100‑1 (MQ=255)
                                      tatttaAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAAtgtg                                                               <  2:566390/100‑1 (MQ=255)
                                       atttaAAATACCCCCTGAAAAGAAAGGAAACGACAGATGATGAAAGAAAACATTTTGGCCTCTGTCGTTTCCTTTATCTGTTTTTGTCTATGGAAtgt                                                                >  2:103037/1‑98 (MQ=14)
                                          taAAATACTTTCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAAt                                                           <  1:1298215/100‑1 (MQ=255)
                                          taAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAAt                                                           >  2:487976/1‑100 (MQ=255)
                                            aaaTACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATgg                                                         <  2:642174/100‑1 (MQ=255)
                                               tACCCCCTGAAAAGAAAGGAAACGACATGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAg                                                      <  2:1308702/100‑1 (MQ=255)
                                               tACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCGATGGAAg                                                      <  1:1174638/100‑1 (MQ=255)
                                                 cccccTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGaa                                                       >  1:1336801/1‑97 (MQ=255)
                                                  ccccTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTca                                                   >  2:565565/1‑100 (MQ=255)
                                                  ccccTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTca                                                   >  2:51833/1‑100 (MQ=255)
                                                   cccTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTcaa                                                  >  1:2185102/1‑100 (MQ=255)
                                                   cccTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTcaa                                                  >  1:2111408/1‑100 (MQ=255)
                                                   cccTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTcaa                                                  <  1:1606673/100‑1 (MQ=255)
                                                    ccTGAAATGAAAGAAAACGACAGGTGCAGAAAGCAAGCTTTCTGGCTTCTGTCGTTTCCTTTCTATGCTGTTGTCCGTGAAATGTGCCATGGATGTccac                                                 >  2:563409/1‑100 (MQ=12)
                                                    ccTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTcaac                                                 <  1:1760623/100‑1 (MQ=255)
                                                    ccTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTcaac                                                 >  2:2210388/1‑100 (MQ=255)
                                                    ccTGAAAAGAAAGGAAACGACAGGTGCTGAAAACGAGCTTTTGGGCCTctgtcgtttcctttcttttcagggggtattttaaataaaaacattaagtta                                                  <  1:1422308‑M2/99‑52 (MQ=255)
                                                      tGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTTTTTTTTTTTGTTTCCTTTATCTGTTATTGTACGTGGAAAGTACAATGGAAGTcaa                                                  >  2:219880/1‑97 (MQ=14)
                                                      tGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTcaacaa                                               <  2:6040/100‑1 (MQ=255)
                                                      tGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTcaacaa                                               <  2:1925784/100‑1 (MQ=255)
                                                       gAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTctgtcgtttcctttcttttcagggggtattttaaataaatacattaagttacgac                                              <  1:204542‑M2/100‑56 (MQ=255)
                                                         aaagaaagGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACaaaaa                                            >  1:1458143/1‑100 (MQ=255)
                                                         aaagaaagGAAACGACAGGTGCTGAAAGCGAGCTATTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGTAGTCAACaaaaa                                            >  2:529132/1‑100 (MQ=255)
                                                         aaagaaagGAAACGACAGGTGCCGAAAGCGGGCTTTTTGGCCGCTGTCGTTTCCTTTCTCTGTTGTTGTCAGTGGGCTGTGCAATGGAAGTca                                                   <  2:1930334/93‑1 (MQ=17)
                                                          aagaaagGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAag                                           <  2:203882/100‑1 (MQ=255)
                                                           agaaagGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAagc                                          <  1:980562/100‑1 (MQ=255)
                                                             aaagGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAagcag                                        <  1:487975/100‑1 (MQ=255)
                                                              aagGAAACGTCAGTTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAagcagc                                       <  2:2091006/100‑1 (MQ=255)
                                                              aagGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAagcagc                                       >  1:2170120/1‑100 (MQ=255)
                                                               agGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTctgtcgtttcctttcttttcagggggtattttaaataaatacattaagttacgacgaagaaga                                      <  1:553988‑M2/100‑64 (MQ=255)
                                                               agGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAgct                                      <  2:2122726/100‑1 (MQ=255)
                                                                ggAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTctgtcgtttcctttcttttcagggggttttttaaataaatacattaagttacgacgcccaag                                       <  1:308137‑M2/98‑63 (MQ=255)
                                                                ggAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTctgtcgtttcctttcttttcagggggtattttaaataaatacattaagttacgacgaagaagaa                                     <  2:1150207‑M2/100‑65 (MQ=255)
                                                                ggAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTctgtcgtttcctttcttttcagggggtattttaaataaatacattaagttacgacgaagaagaa                                     <  2:1150216‑M2/100‑65 (MQ=255)
                                                                ggAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAgctg                                     >  1:337302/1‑100 (MQ=255)
                                                                 gAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCTTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAgctgg                                    <  1:810704/100‑1 (MQ=255)
                                                                 gAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTctgtcgtttcctttcttttcagggggtattttaaataaatacattaagttacgacgaagaagaac                                    <  1:33905‑M2/100‑66 (MQ=255)
                                                                  aaaCGACAGGTGCTGAAAGCGAGCTTTTTGGCCTctgtcgtttcctttcttttcagggggtattttaaataaatacattaagttacgacgaagaagaacg                                   >  1:1150220‑M2/1‑34 (MQ=255)
                                                                  aaaCGACAGGTGCTGAAAGCGAGCTTTTTGGCCTctgtcgtttcctttcttttcagggggtattttaaataaatacattaagttacgacgaagaagaacg                                   >  1:1150211‑M2/1‑34 (MQ=255)
                                                                  aaaCGACAGGTGCTGAAAACGAGCTTTTGGGCCTctgtcgtttcctttcttttcagggggtattttaaataaaaacattaagttacgacgaagaagaacg                                   <  1:1458832‑M2/100‑67 (MQ=255)
                                                                          ggTGCTGAAAGCGAGCTTTTTGACCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACAttt                           >  2:305037/1‑100 (MQ=255)
                                                                             gctgttaGCGAGCTTTTTGGCCTCTTTCGTTGCCTTGCTCTGTTTTTGTCCGTCGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCg                        <  1:1795406/94‑1 (MQ=14)
                                                                             gCTGAAAGCTAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCg                        <  1:1239524/100‑1 (MQ=255)
                                                                             gCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCg                        >  1:1112768/1‑100 (MQ=255)
                                                                              cTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGAAAGTCAACAAAAAGCAGCTGGCTGACATTTTCgg                       >  1:1213458/1‑100 (MQ=255)
                                                                               tGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGt                      >  2:1700203/1‑100 (MQ=255)
                                                                               tGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGt                      >  1:1387216/1‑100 (MQ=255)
                                                                               tGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGt                      >  1:1745786/1‑100 (MQ=255)
                                                                                gAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTg                     <  1:1267874/100‑1 (MQ=255)
                                                                                  aaGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCg                   <  1:694343/100‑1 (MQ=255)
                                                                                    gCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCg                   >  1:456255/1‑98 (MQ=255)
                                                                                    gCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAg                 >  1:1348168/1‑100 (MQ=255)
                                                                                       aGCTTTTTTGCATCTGTCGTTTCCTTTCTTTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGTTGACATTTTCGGTGCGAg                 <  2:492966/97‑1 (MQ=14)
                                                                                        gCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATc             >  1:1959418/1‑100 (MQ=255)
                                                                                          tttttGGCCTCTGTCATTTACTTTCTCTGTTCTTGTCCGTGGAATGTGCAATGGAATTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGAGAGTATCCg           >  2:1748108/1‑100 (MQ=14)
                                                                                           ttttGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGt          <  1:1618273/100‑1 (MQ=255)
                                                                                             ttGGCCTctgtcgtttcctttcttttcagggggtattttaaataaatacattaagttacgacgaagaagaacggaaacaccttaaaccggaaaattttca        >  2:1134862‑M2/1‑7 (MQ=255)
                                                                                             ttGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTAc        <  1:1012652/100‑1 (MQ=255)
                                                                                               ggCCTctgtcgtttcctttcttttcagggggtattttaaataaatacattaagttacgacgaagaagaacggaaacaccttaaaccggaaaattttcata      >  2:553989‑M2/1‑5 (MQ=255)
                                                                                                gCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCAt     >  1:560797/1‑100 (MQ=40)
                                                                                                 ccTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCAtt    <  1:908441/100‑1 (MQ=255)
                                                                                                  ctctGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCATTc   <  1:543785/100‑1 (MQ=255)
                                                                                                   tctGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCATTCa  <  1:634519/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
AGGTGTTTCCGTTCTTCTTCGTCGTAACTTAATGTATTTATTTAAAATACCCCCTGAAAAGAAAGGAAACGACAGGTGCTGAAAGCGAGCTTTTTGGCCTCTGTCGTTTCCTTTCTCTGTTTTTGTCCGTGGAATGTGCAATGGAAGTCAACAAAAAGCAGCTGGCTGACATTTTCGGTGCGAGTATCCGTACCATTCA  >  NC_000913/580694‑580892

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.