New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 792267NA (NA)5 (0.070) 5/164 NT NA noncoding (4/34 nt) REP71 (repetitive extragenic palindromic) element; contains 1 REP sequences REP71 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 = 792297 NA (NA)noncoding (34/34 nt) REP71 (repetitive extragenic palindromic) element; contains 1 REP sequences REP71 (repetitive extragenic palindromic) element; contains 1 REP sequences

GTTTATGAATGATTGCGCTTTTTATCTGAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGGCCGGAGAGGGTGCTAAGGCCGCCTCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCACGAACTCAAGACGATGGGTAATACAGGCAGGCGC  >  NC_000913/792199‑792396
                                                                                                  |                                                                                                   
gTTTATGAATGATTGCGCTTTTTATCTGAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGGCCGGAGAGGGTGCTAAGGCCGCCTCCGGCa                                                                                                    >  1:2061580/1‑100 (MQ=255)
  ttATGAATGATTTCGCTTTTTTTCTGAAAAAAGATGCTGTTTCATGCCTGCATGCGTCGAACCGTTGGCCGGAGAGGTTGCTAAGGCCGCCTCCGGCa                                                                                                    <  2:1122060/98‑1 (MQ=255)
    atgaatgaTTGCGCTTTTTATCTGAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGGCCGGAGAGGGTGCTAAGGCCGCCTCCGGCAAgg                                                                                                 >  1:1126461/1‑99 (MQ=255)
    atgaatgaTTGCGCTTTTTATCTGAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGGCCGGAGAGGGTGCTAAGGCCGCCTCCGGCAAGGt                                                                                                >  1:1523705/1‑100 (MQ=255)
    atgaatgaTTGCGCTTTTTATCTGAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGGCCGGAGAGGGTGCTAAGGCCGCCTCCGGCAAGGt                                                                                                >  2:54101/1‑100 (MQ=255)
     tgaatgaTTGCGCTTTTTATCTGAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAGCCGTTGGCCGGAGAGGGTGCTAAGGCCGCCTCCGGCAAGGTc                                                                                               >  2:643235/1‑100 (MQ=255)
     tgaatgaTTGCGCTTTTTATCTGAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGGCCGGAGAGGGTGCTAAGGCCGCCTCCGGCAAGGTc                                                                                               <  1:151555/100‑1 (MQ=255)
       aatgaTTGCGCTTTTTATCTGAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGGCCGGAGAGGGTGCTAAGGCCGCCTCCGGCAAGGTCAg                                                                                             <  1:1698824/100‑1 (MQ=255)
         tgaTTGCGCTTTTTATCTGAAAAAATACGCTGTTTCAGGCCTGCATGCGTCGAACCGTTGGCCGGAGAGGGTGCTAAGGCCGCCGCCGGCAAGGTCAGc                                                                                            <  2:1357018/99‑1 (MQ=255)
         tgaTTGCGCTTTTTATCTGAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGGCCGGAGAGGGTGCTAAGGCCGCCTCCGGCAAGGTCAGCa                                                                                           >  1:2063686/1‑100 (MQ=255)
         tgaTTGCGCTTTTTATCTGAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGGCCGGAGAGGGTGCTAAGGCCGCCTCCGGCAAGGTCAGCa                                                                                           >  2:1293027/1‑100 (MQ=255)
           aTTGCGCTTTTTATCTGAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGGCCGGAGAGGGTGCTAAGGCCGCCTCCGGCAAGGTCAGCACt                                                                                         >  2:17450/1‑100 (MQ=255)
             tGCGCTTTTTATCTGAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGGCCGGAGAGGGTGCTAAGGCCGCCTCCGGCAAGGTCAGCACTAc                                                                                       >  1:1225130/1‑100 (MQ=255)
               cgcTTTTTATCTGAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGGCCGGAGAGGGTGCTAAGGCCGCCTCCGGCAAGGTCAGCACTACCg                                                                                     <  1:1542658/100‑1 (MQ=255)
               cgcTTTTTAGCTGAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGGCCGGAGAGGGTGCTAAGGCCGCCTCCGGCAAGGTCAGCACTACCg                                                                                     <  1:2071964/100‑1 (MQ=255)
                 cTTTTTATCTGAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGGCCGGAGAGGGTGCTAAGGCCGCCTCCGGCAAGGTCAGCACTACCGAc                                                                                   >  2:955381/1‑100 (MQ=255)
                 cTTTTTATCTGAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGGCCGGAGAGGGTGCTAAGGCCGCCTCCGGCAAGGTCAGCACTACCGAc                                                                                   >  2:674188/1‑100 (MQ=255)
                 cTTTTTATCTGAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGGCCGGAGAGGGTGCTAAGCCCGCCTCCGGCAAGGTCAGCACTACCGa                                                                                    >  2:674187/1‑99 (MQ=255)
                  tttttATCTGAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGGCCGGAGAGGGTGCTAAGGCCGCCTCCGGCAAGGTCAGCACTACCGACt                                                                                  <  1:95256/100‑1 (MQ=255)
                  tttttATCTGAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGGCCGGAGAGGGTGCTAAGGCCGCCTCCGGCAAGGTCAGCACTACCGACt                                                                                  <  1:523689/100‑1 (MQ=255)
                  tttttATCTGAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGGCCGGAGAGGGTGCTAAGGCCGCCTCCGGCAAGGTCAGCACTACCGACt                                                                                  >  1:1976411/1‑100 (MQ=255)
                         cTGAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGGCCGGAGAGGGTGCTAAGGCCGCCTCCGGCAAGGTCAGCACTACCGACTCAatata                                                                           >  1:1670348/1‑100 (MQ=255)
                          tGAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGGCCGGAGAGGGTGCTAAGGCCGCCTCCGGCAAGGTCAGCACTACCGACTCAatatat                                                                          >  1:491701/1‑100 (MQ=255)
                          tGAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGGCCGGAGAGGGTGCTAAGGCCGCCTCCGGCAAGGTCAGCACTACCGACTCAatatat                                                                          >  2:881788/1‑100 (MQ=255)
                           gAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGGCCGGAGAGGGTGCTAAGGCCGCCTCCGGCAAGGTCAGCACTACCGACTCAATATAtt                                                                         >  2:1954245/1‑100 (MQ=255)
                           gAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGGCCGGAGAGGGTGCTAAGGCCGCCTCCGGCAAGGTCAGCACTACCGACTCAATATAtt                                                                         >  2:73895/1‑100 (MQ=255)
                               aaaGATGCTTTTTCTTGCCTGCTTGCGTCGAACCGTTGGCCGGAGAGGGTGCTAAGGCCGCCTCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTg                                                                     <  1:703482/100‑1 (MQ=255)
                               aaaGACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGGCCGGAGAGGGTGCTAAGGCCGCCTCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTg                                                                     <  1:1887790/100‑1 (MQ=255)
                                aaGACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGGCCGGAGAGGGTGCTAAGGCCGCCTCCGGCAAGGTCAGCACTACCGACTCAATATAttttt                                                                      >  2:1361690/1‑98 (MQ=255)
                                 aGACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGGCCGGAGAGGGTGCTAAGGCCGCCTCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTc                                                                   <  2:67412/100‑1 (MQ=255)
                                  gACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGGCCGGAGAGGGTGCTAAGGCCGCCTCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCa                                                                  >  2:729029/1‑100 (MQ=255)
                                    cgcgGTTTCATGCCTGCATGCGTCGAACCGTTGGCCGGAGAGGGTGCTAAGGCCGCGTCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTc                                                                   <  2:2096688/97‑1 (MQ=255)
                                    cgcgGTTTCATGCCTGCATGCGTCGAACCGTTGGCCGGAGAGGGTGCTAAGGCCGCCTCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGc                                                                >  2:452068/1‑100 (MQ=255)
                                        gTTTCATGCCTGCATGCGTCGAACCGTTGGCCGGAGAGGGTGCTAAGGCCGCCTCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACAt                                                            >  1:707758/1‑100 (MQ=255)
                                         tttCATGCCTGCATGCGTCGAACCGTTGGCCGGAGAGGGTGCTAAGGCCGCCTCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATa                                                           <  1:1992381/100‑1 (MQ=255)
                                           tCATGCCTGCATGCGTCGAACCGTTGGCCGGAGAGGGTGCTAAGGCCGCCTCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGc                                                         <  1:6926/100‑1 (MQ=255)
                                            cctGCCTGCATGCGTTGAAAAGTTAGACGGAGAGGGTGCTAAGTCCGCGGCCAACAAGTTCAGCATTAACGACTAAATATATTTTTGTCAGCACTTAgta                                                        >  2:2069810/3‑98 (MQ=255)
                                             aTGCCTGCATGCGTCGAACCGTTGGCCGGAGAGGGTGCTAAGGCCGCCTCCGGCAAGGTTAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGa                                                       >  1:564635/1‑100 (MQ=255)
                                               gCCTGCATGCGTCGAACCGTTGGCCGGAGAGGGTGCTAAGGCCGCCTCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATa                                                     <  2:2033942/100‑1 (MQ=255)
                                                  tGCATGCGTCGAACCGTTGGCCGGAGAGGGTGCTAAGGCCGCCTCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATagag                                                  >  2:1423299/1‑100 (MQ=255)
                                                   gCATGCGTCGAACCGTTGGCCGGAGAGGGTGCTAAGGCCGCCTCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATagag                                                  <  2:26615/99‑1 (MQ=255)
                                                   gCATGCGTCGAACCGTTGGCCGGAGAGGGTGCTAAGGCCGCCTCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGt                                                 <  1:1881881/100‑1 (MQ=255)
                                                       gCGTCGAACCGTTGGCCGGAGAGGGTGCTAAGGCCGCCTCCGGCaaacggttcgacgcatgcaggcatgaaaccgcgtcttttttcagataaaaagcgca                                             <  1:1629795‑M2/100‑57 (MQ=255)
                                                          tCGAACCGTTGGCCGGAGAGGGTGCTAAGGCCGCCTCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGt                                          <  2:2019273/100‑1 (MQ=255)
                                                          tCGAACCGTTGGCCGGAGAGGGTGCTAAGGCCGCCTCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGt                                          <  2:982418/100‑1 (MQ=255)
                                                            gAACCGTTGGCCGGAGAGGGTGCTAAGGCCGCCTCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTcc                                        >  2:42078/1‑100 (MQ=255)
                                                            gAACCGTTGGCCGGAGAGGGTGCTAAGGCCGCCTCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTcc                                        >  2:905434/1‑100 (MQ=255)
                                                            gAACCGTTGGCCGGAGAGGGTGCTAAGGCCGCCTCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTc                                         >  2:2175895/1‑99 (MQ=255)
                                                             aaCCGTTGGCCGGAGAGGGTGCTAAGGCCGCCTCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCg                                       <  1:30646/100‑1 (MQ=255)
                                                              aCCGTTGGCCGGAGAGGGTGCTAAGGCCGCCTCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCgg                                      >  1:55087/1‑100 (MQ=255)
                                                               ccGTTGGCCGGAGAGGGTGCTAAGGCCGCCTCCGGCcaacggttcgacgcatgcaggcatgaaaccgcgtcttttttcagataaaaagcgcaatcattca                                     <  2:1000243‑M2/100‑65 (MQ=255)
                                                                 gTTGGCCGGAGAGGGTGCTAAGGCCGCCTCCGGCcaacggttcgacgcatgcaggcatgaaaccgcgtcttttttcagataaaaagcgcaatcattcata                                   <  1:24117‑M2/100‑67 (MQ=255)
                                                                 gTTGGCCGGAGAGGGTGCTAAGGCCGCCTCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCAc                                   >  1:1307471/1‑100 (MQ=255)
                                                                 gTTGGCCGGAGAGGGTGCTAAGGCCGCCTCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCAc                                   <  1:1339871/100‑1 (MQ=255)
                                                                  ttGGCCGGAGAGGGTGCTAAGGCCGCCTCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCACg                                  <  1:955383/100‑1 (MQ=255)
                                                                    ggCCGGAGAGGGTGCTAAGGCCGCCTCCGGCcaacggttcgacgcatgcaggcatgaaaccgcgtcttttttcagataaaaagcgcaatcattcataaac                                <  1:1732153‑M2/100‑70 (MQ=255)
                                                                    ggCCGGAGAGGGTGCTAAGGCCGCCTCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCACGaa                                <  1:1989495/100‑1 (MQ=255)
                                                                     gCCGGAGAGGGTGCTAAGGCCGCCTCCGGCcaacggttcgacgcatgcaggcatgaaaccgcgtcttttttcagataaaaagcgcaatcattcataaacc                               <  1:724279‑M2/100‑71 (MQ=255)
                                                                     gCCGGAGAGGGTGCTAAGGCCGCCTCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCACGAAc                               <  1:1303160/100‑1 (MQ=255)
                                                                     gCCGGAGAGGGTGCTAAGGCCGCCTCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCACGAAc                               >  1:1849803/1‑100 (MQ=255)
                                                                     gCCGGAGAGGGTGCTAAGGCCGCCTCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCACGAAc                               <  1:2004771/100‑1 (MQ=255)
                                                                       cGGAGAGGGTGCTAAGGCCGCCTCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCACGAACTc                             >  1:1815584/1‑100 (MQ=255)
                                                                         gagaGGGTGCTCAGCCCGCCTCCGGCAAGGTCAGCACTCCCGACTCAATATCTTTTTCTCAGCACATCGCGCCACACTCCACCGTCCgccccgccc                               >  2:2185088/1‑88 (MQ=255)
                                                                          agagGGTGCTAAGGCCGCCTCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCACGAACTCAAg                          <  1:686436/100‑1 (MQ=255)
                                                                          agagGGTGCTAAGGCCGCCTCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCACGAACTCAAg                          <  1:686435/100‑1 (MQ=255)
                                                                           gagGGTGCTAAGGCCGCCTCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCACGAACTCAAGa                         >  1:266913/1‑100 (MQ=255)
                                                                           gagGGTGCTAAGGCCGCCTCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCACGAACTCAAGa                         >  1:2214362/1‑100 (MQ=255)
                                                                             gggTGCTAAGGCCGCCTCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATCGAGTCCACCGTCCGGCACGAACTCAAg                          >  1:1100544/1‑97 (MQ=255)
                                                                             gggTGCTAAGGCCGCCTCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCACGAACTCAAGACg                       >  1:1439870/1‑100 (MQ=255)
                                                                             gggTGCTAAGGCCGCCTCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCACGAACTCAAGACg                       >  1:480390/1‑100 (MQ=255)
                                                                              ggTGCTAAGGCCGCCTCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCACGAACTCAAGACg                       >  1:2190671/1‑99 (MQ=255)
                                                                              ggTGCTAAGGCCGCCTCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCACGAACTCAAGACGa                      >  1:1381507/1‑100 (MQ=255)
                                                                                tGCTAAGGCCGCCTCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCACGAACTCAAGACGATg                    <  1:663514/100‑1 (MQ=255)
                                                                                 gCTAAGGCCGCCTCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCACGAACTCAAGACGATgg                   >  2:774614/1‑100 (MQ=255)
                                                                                  cTAAGGCCGCCTCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCACGAACTCAAGACGATggg                  <  1:519011/100‑1 (MQ=255)
                                                                                  cTAAGGCCGCCTCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCACGAACTCAAGACGATggg                  >  1:2086435/1‑100 (MQ=255)
                                                                                  cTAAGGCCGCCTCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCACGAACTCAAGACGATggg                  <  1:1659238/100‑1 (MQ=255)
                                                                                   tAAGGCCGCCTCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCACGAACTCAAGACGATGGGt                 <  2:217416/100‑1 (MQ=255)
                                                                                   tAAGGCCGCCTCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCACGAACTCAAGACGATGGGt                 >  1:1572807/1‑100 (MQ=255)
                                                                                    aaGTCCGCCTCCGGCAAGATCAACACTACAAAATCATTTTGTTTTTGTCAGCACAAAGAGATAGAGTCCACCGCCCGGCACGAACTCAAGACGATgg                   <  2:1904212/97‑1 (MQ=255)
                                                                                    aaGGCCGCCTCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCACGAACTCAAGACGATGGGTa                <  2:117340/100‑1 (MQ=255)
                                                                                      ggCCGCCTCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCATCGTCCGGCACGAACTCAAGACGATGGGTAAt              >  1:2084613/1‑100 (MQ=255)
                                                                                      ggCCGCCTCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCACGAACTCAAGACGATGGGTAAt              >  1:283693/1‑100 (MQ=255)
                                                                                      ggCCGCCTCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCACGAACTCAAGACGATGGGTAAt              >  1:1603969/1‑100 (MQ=255)
                                                                                         cgccTCCGGCAAGGTCAGCACTACCGACTTAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCACGAACTCAAGACGATGGGTAATAca           <  1:270339/100‑1 (MQ=255)
                                                                                         cgccTCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCACGAACTCAAGACGATGGGTAATAca           >  2:1962032/1‑100 (MQ=255)
                                                                                         cgccTCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCACGAACTCAAGACGATGGGTAATAca           <  2:174094/100‑1 (MQ=255)
                                                                                         cgccTCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATACAGTCCACCGTCCGGCACGAACTCAAGACGATGGGTAATAca           <  2:1225126/100‑1 (MQ=255)
                                                                                          gccTCCGGCAAGGTCAGCACTACCGACTCAATGTATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCACGAACTCAAGACGATGGGTAATAcag          >  1:2134373/1‑100 (MQ=255)
                                                                                          gccTCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCACGAACTCAAGACGATGGGTAATAcag          <  2:833937/100‑1 (MQ=255)
                                                                                            cTCCGGCcaacggttcgacgcatgcaggcatgaaaccgcgtcttttttcagataaaaagcgcaatcattcataaaccctctgttttataatcacttaatc        <  2:2156371‑M2/100‑94 (MQ=255)
                                                                                            cTCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCACGAACTCAAGACGATGGGTAATAcaggc        >  1:628975/1‑100 (MQ=255)
                                                                                            cTCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCACGAACTCAAGACGATGGGTAATAcaggc        >  1:1877984/1‑100 (MQ=255)
                                                                                             tCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCACGAACTCAAGACGATGGGTAATAcaggca       <  2:2063672/100‑1 (MQ=255)
                                                                                               cGGCcaacggttcgacgcatgcaggcatgaaaccgcgtcttttttcagataaaaagcgcaatcattcataaaccctctgttttataatcacttaatcgcg     <  1:1652857‑M2/100‑97 (MQ=255)
                                                                                               cGGCcaacggttcgacgcatgcaggcatgaaaccgcgtcttttttcagataaaaagcgcaatcattcataaaccctctgttttataatcacttaatcgcg     >  2:428326‑M2/1‑4 (MQ=255)
                                                                                                  ccaacggttcgacgcatgcaggcatgaaaccgcgtcttttttcagataaaaagcgcaatcattcataaaccctctgttttataatcacttaatcgcgcat  <  2:2154955‑M2/100‑100 (MQ=255)
                                                                                                  cAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCACGAACTCAAGACGATGGGTAATACAGGCAGgcgc  <  1:1804992/100‑1 (MQ=255)
                                                                                                  cAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCACGAACTCAAGACGATGGGTAATACAGGCAGgcgc  <  1:1805757/100‑1 (MQ=255)
                                                                                                  |                                                                                                   
GTTTATGAATGATTGCGCTTTTTATCTGAAAAAAGACGCGGTTTCATGCCTGCATGCGTCGAACCGTTGGCCGGAGAGGGTGCTAAGGCCGCCTCCGGCAAGGTCAGCACTACCGACTCAATATATTTTTGTCAGCACATAGCGATAGAGTCCACCGTCCGGCACGAACTCAAGACGATGGGTAATACAGGCAGGCGC  >  NC_000913/792199‑792396

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.