| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1852545 = | NA (NA) | 4 (0.060) | 4/156 | NT | NA | intergenic (+17/+76) | pncA/ydjE | nicotinamidase/pyrazinamidase/putative MFS sugar transporter, membrane protein |
| ? | NC_000913 | 1852562 = | NA (NA) | noncoding (1/36 nt) | REP132 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP132 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
GGAGATGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGAAATCTCTTCCAACGACACCTTCCGC > NC_000913/1852465‑1852660 | gagatttctgaggtgaattaaatctttcgttgatggcatcaattgccagatgtgccactgacgtgttttatttgtcctacaatgccagtacagaattGTa > 2:1469576‑M2/98‑100 (MQ=255) agatttctgaggtgaattaaatctttcgttgatggcatcaattgccagatgtgccactgacgtgttttatttggcctacaatgccagtacagaattGTAg < 2:861691‑M2/4‑1 (MQ=255) agatttctgaggtgaattaaatctttcgttgatggcatcaattgccagatgtgccactgacgtgttttatttggcctacaatgccagtacagaattGTAg < 2:2244278‑M2/4‑1 (MQ=255) agatttctgaggtgaattaaatctttcgttgatggcatcaattgccagatgtgccactgacgtgttttatttggcctacaatgccagtacagaattGTAg > 2:2106447‑M2/97‑100 (MQ=255) gatttctgaggtgaattaaatctttcgttgatggcatcaattgccagatgtgccactgacgtgttttatttggcctacaatgccagtacagaattGTAgg < 1:105817‑M2/5‑1 (MQ=255) gatttctgaggtgaattaaatctttcgttgatggcatcaattgccagatgtgccactgacgtgttttatttggcctacAATTCTGTACTGGCATTGTAgg > 1:332827‑M1/79‑100 (MQ=255) atttctgaggtgaattaaatctttcgttgatggcatcaattgccagatgtgccactgacgtgttttatttggcctacaatgccagtacagaattGTAGGc < 2:157261‑M2/6‑1 (MQ=255) atttctgaggtgaattaaatctttcgttgatggcatcaattgccagatgtgccactgacgtgttttatttggcctacaatgccagtacagaattGTAGGc < 2:1204849‑M2/6‑1 (MQ=255) tttctgaggtgaattaaatctttcgttgatggcatcaattgccagatgtgccactgacgtgttttatttggcctacaatgccagtacagaattGTAGGcc < 2:1926705‑M2/7‑1 (MQ=255) tttctgaggtgaattaaatctttcgttgatggcatcaattgccagatgtgccactgacgtgttttatttggcctacaatgccagtacagaattGTAGGcc > 2:2225751‑M2/94‑100 (MQ=255) tttctgaggtgaattaaatctttcgttgatggcatcaattgccagatgtgccactgacgtgttttatttggcctacAATTCTGTACTGGCATTGTAGGcc > 1:977232‑M1/77‑100 (MQ=255) gTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCaa > 1:150963/1‑100 (MQ=255) tgaggtgaattaaatctttcgttgatggcatcaattgccagatgtgccactgacgtgttttatttggcctacAATTCTGTACTGGCATTGTAGGCCAAAt > 1:400098‑M1/73‑100 (MQ=255) cagcagCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTATGTACTGGCATTGTAGGCCAAAt > 2:2189767/1‑100 (MQ=255) agcTGGGGCAACGCTATATACGCTGGCAGACTGGTAAGAGACATAGGGGTAATTTTACGCTGTCCTACAATTCTTTATTGTTATTGTAGGCAAAATa < 2:1072008/97‑1 (MQ=255) gcTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTTGCATTGTAGGCCAAATAAAac < 2:2202390/100‑1 (MQ=255) gcTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAac < 2:2244957/100‑1 (MQ=255) gggCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCGAATAAAACACGt > 1:888304/1‑100 (MQ=255) gggCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGt > 1:1766041/1‑100 (MQ=255) ggCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTc > 2:1544295/1‑100 (MQ=255) gCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCa > 1:1966205/1‑100 (MQ=255) cAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAg > 1:1863940/1‑100 (MQ=255) gCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGc < 2:1173395/100‑1 (MQ=255) gCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGc > 2:1410795/1‑100 (MQ=255) gCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGc < 2:952279/100‑1 (MQ=255) gCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGc < 1:1711987/100‑1 (MQ=255) gCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGc < 2:321352/100‑1 (MQ=255) gCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCGACAATTATGTACTGGCATTGTAGGCCAAATAAAACACGGCAGTgg > 2:2138939/1‑99 (MQ=255) tataCGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACAt > 2:1542284/1‑100 (MQ=255) gttgatggcatcaattgccagatgtgccactgacgtgttttatttggcctacaatgccagtacagaattGTAGGCCAAATAAAACACGTCAGTGGCACAt > 1:1556061‑M2/70‑100 (MQ=255) cGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTgg < 1:1410805/100‑1 (MQ=255) cGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTgg > 1:1870130/1‑100 (MQ=255) ggCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAAt > 1:857349/1‑100 (MQ=255) ggCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGCAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAAt < 2:1196122/100‑1 (MQ=255) cTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATg < 1:922575/99‑1 (MQ=255) cTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATg > 2:366468/1‑99 (MQ=255) gggAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCa > 1:792780/1‑100 (MQ=255) gggAAGAGACACAGGGGCAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCa < 2:1929028/100‑1 (MQ=255) ggAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCAt > 1:985334/1‑100 (MQ=255) gAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCAt > 1:1982066/1‑99 (MQ=255) gAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATc < 2:716906/100‑1 (MQ=255) gAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATc < 2:1396438/100‑1 (MQ=255) agagACACAGGGGTAATTTTAAGCTGGCTTACAATTCTGTACAGGCCTTGTAGGCCAAATGAAAGACGTCAGTGGAACATCTGGCAATTGATGCcaacaa > 2:141927/1‑100 (MQ=255) gagaCACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAAc < 2:1767972/100‑1 (MQ=255) atgtgccactgacgtgttttatttggcctacAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAAc > 1:1556061‑M1/32‑100 (MQ=255) ttccgatctggTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACg < 2:1034017/91‑1 (MQ=255) atacacAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACg < 1:423644/98‑1 (MQ=255) agaCACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACg < 1:400047/100‑1 (MQ=255) cacaGGGGTAATTTTTCGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGaa < 2:1781192/99‑1 (MQ=255) cacaGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGCCAGTGGCACATCTGGCAATTGATGCCATCAACGaaa < 1:1584001/100‑1 (MQ=255) acaGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAg < 1:1819311/100‑1 (MQ=255) caGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGa > 2:1041088/1‑100 (MQ=255) caGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGa > 1:2036053/1‑100 (MQ=255) caGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGa > 1:480207/1‑100 (MQ=255) aGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGAt < 1:1630270/100‑1 (MQ=255) aGGGGTAATTTTACGCTGGCCTAAAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGAt < 2:1894137/100‑1 (MQ=255) gggTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTATGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGAttt < 2:1747509/100‑1 (MQ=255) ggTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGagatcggaa > 1:1034019/1‑92 (MQ=255) ggTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTa < 2:1308910/100‑1 (MQ=255) tAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACTTAAGTGGCACATCTCGCAATTGATTCTATCAACGAAAGATTTAAt < 2:2104395/100‑1 (MQ=255) tAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAAt < 1:1146704/100‑1 (MQ=255) aTTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTc > 2:1423143/1‑100 (MQ=255) aTTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTc > 2:1042661/1‑100 (MQ=255) aTTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTc < 1:2166251/100‑1 (MQ=255) ttACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCAACAACGAAAGATTTAATTCa > 2:2017546/1‑98 (MQ=255) cGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCa > 2:227243/1‑100 (MQ=255) atttggcctacaatgccagtacagaattGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCa > 1:400098‑M2/29‑100 (MQ=255) cTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGa > 2:1328408/1‑100 (MQ=255) ggcctacaatgccagtacagaattGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGaaa > 1:977232‑M2/25‑100 (MQ=255) ggcctacAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGaaa > 2:2225751‑M1/8‑100 (MQ=255) ggcctacAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGaaa < 2:1926705‑M1/93‑1 (MQ=255) gcctacAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGAAAt < 2:1204849‑M1/94‑1 (MQ=255) gcctacAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGAAAt < 2:157261‑M1/94‑1 (MQ=255) cctacaatgccagtacagaattGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGAAAtc > 1:332827‑M2/23‑100 (MQ=255) cctacAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGAAAtc < 1:105817‑M1/95‑1 (MQ=255) ctacAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGAAAtct > 2:2106447‑M1/5‑100 (MQ=255) ctacAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGAAAtct < 2:2244278‑M1/96‑1 (MQ=255) ctacAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGAAAtct < 2:861691‑M1/96‑1 (MQ=255) tacAATTCTGTACTGGCATTGTAGGACAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGAAAtctc > 2:1469576‑M1/4‑100 (MQ=255) ATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGAAATCTCTTcc < 2:1825148‑M1/100‑1 (MQ=255) tGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGAAATCTCTTCCAACg < 2:303190/100‑1 (MQ=255) tGTACTGGCATTGTAGGCCAAATAAAAAACGTCAGTGGAACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGAAATCTCTTCCAACg < 1:748619/100‑1 (MQ=255) ggaCTGGCATTGTAGGCTAAATAAAACACGTCAGTGGCACATCGGGCAATTTATGACATCAACGAAAGATTGAAAACACCTCAGAAATCTCTTCCAAc > 2:1005017/3‑98 (MQ=255) gTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCGCATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGAAATCTCTTCCAACGa > 2:1501785/1‑100 (MQ=255) tACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCTCCTCAGAAATCTCTTCCAACGac < 2:576457/100‑1 (MQ=255) aCTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGAAATCTCTTCCAACGaca < 1:1559805/100‑1 (MQ=255) cTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCACTTGATGCCATCAACAAAAGATTTAATTCACCTCAGAAATCTCTTCCAACGacac > 2:1472597/1‑100 (MQ=255) cATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGAAATCTCTTCCAACGACACCTTc > 2:2160297/1‑100 (MQ=255) cATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGAAATCTCTTCCAACGACACCTTc > 2:1813699/1‑100 (MQ=255) tGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGAAATCTCTTCCAACGACACCTTCcgc < 1:2136008‑M2/99‑1 (MQ=255) | GGAGATGTCAGCAGCTGGGGCAACGCTATATACGCTGGCAGACTGGGAAGAGACACAGGGGTAATTTTACGCTGGCCTACAATTCTGTACTGGCATTGTAGGCCAAATAAAACACGTCAGTGGCACATCTGGCAATTGATGCCATCAACGAAAGATTTAATTCACCTCAGAAATCTCTTCCAACGACACCTTCCGC > NC_000913/1852465‑1852660 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |