Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 1,703,252 A→T 15.6% intergenic (+18/+16) add → / ← ydgJ adenosine deaminase/putative oxidoreductase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,703,2520AT15.6% 193.0 / 29.0 77intergenic (+18/+16)add/ydgJadenosine deaminase/putative oxidoreductase
Reads supporting (aligned to +/- strand):  ref base A (32/33);  new base T (5/7);  total (37/40)
Fisher's exact test for biased strand distribution p-value = 7.57e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.93e-01

GGCACAGATTAATGGTCTGGAAATGGCTTTCCTCAGCGCTGAGGAAAAACGCGCACTGCGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCAAATGCACCATCCATTTTTCATGCAAGGCACAAAGTCGCGCGATGTTTGGCGGATTCGATGCCCAGCTCAATCAACTCCATTACCTGGATTGCCTGGCTTG  >  NC_000913/1703153‑1703350
                                                                                                   |                                                                                                  
ggCACAGATTAATGGTCTGGAAATGGCTTTCCTCAGCGCTGAGGAAAAACGCGCACTGCGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCaaa                                                                                                    <  1:354146/100‑1 (MQ=255)
  cacaGATTAATGGTCTGGAAATGGCTTTCCTCAGCGCTGAGGAAAAACGCGCACTGCGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCAAATg                                                                                                  <  1:942292/100‑1 (MQ=255)
  cacaGATTAATGGTCTGGAAATGGCTTTCCTCAGCGCTGAGGAAAAACGCGCACTGCGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCAAATg                                                                                                  >  1:1409240/1‑100 (MQ=255)
   acaGATTAATGGTCTGGAAATGGCTTTCCTCAGCGCTGAGGAAAAACGCGCACTGCGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCAAATGc                                                                                                 <  1:806681/100‑1 (MQ=255)
    caGATTAATGGTCTGGAAATGGCTTTCCTCAGCGCTGAGGAAAAACGCGCACTGCGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCAAATGCa                                                                                                >  2:820485/1‑100 (MQ=255)
    caGATTAATGGTCTGGAAATGGCTTTCCTCAGCGCTGAGGAAAAACGCGCACTGCGAGAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCAAATGCAc                                                                                               <  2:1251754/100‑1 (MQ=255)
     aGATTAATGGTCTGGAAATGGCTTTCCTCAGCGCTGAGGAAAAACGCGCACTGCGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCAAATGCAc                                                                                               <  1:733023/100‑1 (MQ=255)
     aGATTAATGGTCTGGAAATGGCTTTCCTCAGCGCTGAGGAAAAACGCGCACTGCGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCAAATGCAc                                                                                               >  2:1440449/1‑100 (MQ=255)
      gATTAATGGTCTGGAAATGGCTTTCCTCAGCGCTGAGGAAAAACGCGCACTGCGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCAAATGCAcc                                                                                              <  2:115507/100‑1 (MQ=255)
          aaTGGTCTGGAAATGGCTTTCCTCAGCGCTGAGTAAAAACGCGCACTGCGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCATTTGCAccatcc                                                                                          <  1:456030/100‑1 (MQ=255)
          aaTGGTCTGGAAATGGCTTTCCTCAGCGCTGAGGAAAAACGCGCACTGCGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCATTTGCAccatcc                                                                                          <  2:943066/100‑1 (MQ=255)
            tGGTCTGGAAATGGCTTTCCTCAGCGCTGAGGAAAAACGCGCACTGCGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCAAATGCAccatccat                                                                                        >  2:412683/1‑100 (MQ=255)
             gttCTGGAAATGGCTTTCCTCAGCGCTGAGGAAAAACGCGCACTGCGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCATTTGCAccatccat                                                                                        <  2:1408875/97‑1 (MQ=255)
             ggTCTGGAAATGGCTTTCCTCAGCGCTGAGGAAAAACGCGCACTGCGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCATTTGCACCATCCAtt                                                                                       <  1:94764/100‑1 (MQ=255)
             ggTCTGGAAATGGCTTTCCTCAGCGCTGAGGAAAAACGCGCACTGCGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCATTTGCACCATCCAtt                                                                                       <  1:199531/100‑1 (MQ=255)
                 tGGTAATTGCTTTACTCAACGCTGAAGAAAAACGCGCATTGCGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCAAATGCACCATCCATTTTTc                                                                                   <  2:1611882/100‑1 (MQ=38)
                 tGGAAATGGCTTTCCTCAGCGCTGAGGAAAAACGCGCACTGCGAGAAAAAGTCGCCGCGAAGTAACAAAATGTATGGTGCAAATGCACCATCCATTTTTc                                                                                   <  2:1177651/100‑1 (MQ=255)
                 tGGAAATGGCTTTCCTCAGCGCTGAGGAAAAACGCGCACTGCGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCATTTGCACCATCCAttttgt                                                                                   <  1:2171837/100‑3 (MQ=255)
                 tGGAAATGGCTTTCCTCAGCGCTGAGGAAAAACGCGCACTGCGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCAAATGCACCATCCATTTTTc                                                                                   <  2:255442/100‑1 (MQ=255)
                  ggAAATGGCTTTCCTCAGCGCTGAGGAAAAACGCGCACTGCGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCAAATGCACCATCCATTTTTCa                                                                                  <  1:1544182/100‑1 (MQ=255)
                  ggAAATGGCTTTCCTCAGCGCTGAGGAAAAACGCGCACTGCGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCAAATGCACCATCCATTTTTCa                                                                                  >  2:2131265/1‑100 (MQ=255)
                   gAAATGGCTTTCCTCAGCGCTGAGGAAAAACGCGCACTGCGAGAAAAAGTCGCCGCGAAGTAACAAAATTGATGGTGCAAATGCACCATCCATTTTTCAt                                                                                 <  2:121221/100‑1 (MQ=255)
                   aaaaTGGCTTTCATCAGCGCTGAGCAAAAACGCGCACTAAGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCAAATGCACCATCCATTTTTCAt                                                                                 <  2:1448231/99‑1 (MQ=39)
                    aaaTGGCTTTCCTCAGCGCTGAGGAAAAACGCGCACTGCGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCATTTGCACCATCCAttttgttac                                                                                <  1:1857217/100‑6 (MQ=37)
                       tGGCTTTCCTCAGCGCTGAGGAAAAACGCGCACTGCGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCAAATGCACCATCCATTTTTCATGCaa                                                                             <  1:581032/100‑1 (MQ=255)
                       cgtttttCCTCAGCGCTGAGGAAAAACGCGCACTGCGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCAAATGCACCATCCATTTTTCATGCaa                                                                             >  1:1659835/5‑100 (MQ=255)
                       cgtttttCCTCAGCGCTGAGGAAAAACGCGCACTGCGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCAAATGCACCATCCATTTTTCATGCaa                                                                             >  2:858304/5‑100 (MQ=255)
                        gtttttCCTCAGCGCTGAGGAAAAACGCGCACTGCGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCAAATGCACCATCCATTTTTCATGCAAg                                                                            >  2:1348404/4‑100 (MQ=255)
                        gtcTTTCCTCAGCGCTGAGGAAAAACGCGCACTGCGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCAAATGCACCATCCATTTTTCATGCAAg                                                                            <  1:6561/98‑1 (MQ=255)
                         gCTTTCCTCAGCGCTGAGGAAAAACGCGCACTGCGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCAAATGCACCATCCATTTTTCATGCAAgg                                                                           >  1:162251/1‑100 (MQ=255)
                           tttCCTCAGCGCTGAGGAAAAACGCGCACTGCGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCAAATGCACCATCCATTTTTCATGCAAGGca                                                                         >  1:1661227/1‑100 (MQ=255)
                               cTCAGCGCTGAGGAAAAACGCGCACTGCGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCAAATGCACCATCCATTTTTCATGCAAGGCACaaa                                                                     >  2:584743/1‑100 (MQ=255)
                               cTCAGCGCTGAGGAAAAACGCGCACTGCGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCAAATGCACCATCCATTTTTCATGCAAGGCACaaa                                                                     >  2:362609/1‑100 (MQ=255)
                                tCAGCGCTGAGGAAAAACGCGCACTGCGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCAAATGCACCATCCATTTTTCATGCAAGGCACAAAg                                                                    >  2:248226/1‑100 (MQ=255)
                                 cAGCGCTGAGGAAAAACGCGCACTGCGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCAAATGCACCATCCATTTTTCATGCAAGGCACaaa                                                                     >  1:1237187/1‑98 (MQ=255)
                                 cAGCGCTGAGGAAAAACGCGCACTGCGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCAAATGCACCATCCATTTTTCATGCAAGGCACAAAGt                                                                   <  1:138791/100‑1 (MQ=255)
                                   gcgcTGAGGAAAAACGCGCACTGCGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCAAATGCACCATCCATTTTTCATGCAAGGCACAAAGTcg                                                                 <  1:847120/100‑1 (MQ=255)
                                      cTGAGGAAAAACGCGCACTGCGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCAAATGCACCATCCATTTTTCATGCAAGGCACAAAGTcgcgc                                                              <  1:2093608/100‑1 (MQ=255)
                                          ggAAAAACGCGCACTGCGAGAAAAAGTAGCCGCGAAGTAACAAAATGGATGGTGCAAATGAACCATCCATTTTTAATGCAAGGCACTAAATcgcg                                                               >  1:1305042/1‑95 (MQ=255)
                                           gAAAAACGCGCACTGCGAGAAAAAGTCGCCGCAAAGTAACAAAATGGATGGTGCAAATGCACCATCCATTTTTTATGCAAGGCACAAAGTCGCGCGATg                                                          <  2:2103950/99‑1 (MQ=255)
                                               aaCGCGCACTGCGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCAAATGCACCATCCATTTTTCATGCAAGGCACAAAGTCGCGCGATGTTTgg                                                     >  1:46879/1‑100 (MQ=255)
                                                aCGCGCACTGCGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCAAATGCACCATCCATTTTTCATGCAAGGCACAAAGTCGCGCGATGTTTGGc                                                    <  2:541334/100‑1 (MQ=255)
                                                 cgcgCACTGCGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCAAATGCACCATCCATTTTTCATGCAAGGCACAAAGTCGCGCGATGTTTGGCg                                                   <  1:1956734/100‑1 (MQ=255)
                                                  gcgcACTGCGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCAAATGCACCATCCATTTTTCATGCAAGGCACAAAGTCGCGCGATGTTTGGCgg                                                  <  1:232976/100‑1 (MQ=255)
                                                     cACTGCGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCAAATGCACCATCCATTTTTCATGCAAGGCACAAAGTCGCGCGATGTTTGGCGGAtt                                               >  2:2191230/1‑100 (MQ=255)
                                                      aCTGCGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCAAATGCACCATCCATTTTTCATGCAAGGCACAAAGTCGCGCGATGTTTGGCGGATTc                                              <  1:1348410/100‑1 (MQ=255)
                                                      aCTGCGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCAAATGCACCATCCATTTTTCATGCAAGGCACAAAGTCGCGCGATGTTTGGCGGATTc                                              <  1:1651241/100‑1 (MQ=255)
                                                      aCTGCGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCAAATGCACCATCCATTTTTCATGCAAGGCACAAAGTCGCGCGATGTTTGGCGGATTc                                              <  2:900663/100‑1 (MQ=255)
                                                       cTGCGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCAAATGCACCATCCATTTTTCATGCAAGGCACAAAGTCGCGCGATGTTTGGCGGATTCg                                             >  1:1894907/1‑100 (MQ=255)
                                                         gCGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCAAATGCACCATCCATTTTTCATGCAAGGCACAAAGTCGCGCGATGTTTGGCGGATTCGAt                                           >  2:607589/1‑100 (MQ=255)
                                                          cGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCAAATGCACCATCCATTTTTCATGCAAGGCACAAAGTCGCGCGATGTTTGGCGGATTCGAt                                           >  1:1971003/1‑99 (MQ=255)
                                                           gagaAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCAAATGCATCATCCATTTTTCATGCAAGGCACAAAGTCGCGCGATGTTTGGCGGATTCGATGc                                         <  2:1203173/100‑1 (MQ=255)
                                                             gaAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCAAATGCACCATCCATTTTTCATGCAAGGCACAAAGTCGCGCGATGTTTGGCGGATTCGATGccc                                       >  1:1934323/1‑100 (MQ=255)
                                                              aaaaaGTCGCCGCGAAGTAACAAAATGGATGGTGCAAATGCACCATCCATTTTTCATGCAAGGCACAAAGTCGCGCGATGTTTGGCGGATTCGATGccc                                       <  1:1845526/99‑1 (MQ=255)
                                                                 aaGTCGCCGCGAAGTAACAAAATGGATGGTGTAAATGCACCATCCATTTTTCATGCAAGGCACAAAGTCGCGCGATGTTTGGCGGATTCGATGCCCAGCt                                   <  1:923757/100‑1 (MQ=255)
                                                                      gccgcGAAGTAACAAAATGGATGGTGCAAATGCACCATCCATTTTTCATGCAAGGCACAAAGTCGCGCGATGTTTGGCGGATTCGATGCCCAGCtcaatc                              >  1:50069/1‑100 (MQ=255)
                                                                         gcgAAGTAACAAAATGGATGGTGCAAATGCACCATCCATTTTTCATGCAAGGCACAAAGTCGCGCGATGTTTGGCGGATTCGATGCCCAGCTCAATCAAc                           <  1:1008627/100‑1 (MQ=255)
                                                                          cgAAGTAACAAAATGGATGGTGCAAATGCACCATCCATTTTTCATGCAAGGCACAAAGTCGCGCGATGTTTGGCGGATTCGATGCCCAGCTCAATCAACt                          <  1:1063824/100‑1 (MQ=255)
                                                                            aaGTAACAAAATGGATGGTGCAAATGCACCATCCATTTTTCATGCAAGGCACAAAGTCGCGCGATGTTTGGCGGATTCGATGCCCATCTCAATCAACttc                        <  1:1510140/100‑3 (MQ=255)
                                                                                aaCAAAATGGATGGTGCAAATGCACCATCCATTTTTCATGCAAGGCACAAAGTCGCGCGATGTTTGGCGGATTCGATGCCCAGCTCAATCAACTCCATTa                    >  2:2187269/1‑100 (MQ=255)
                                                                                aaCAAAATGGATGGTGCAAATGCACCATCCATTTTTCATGCAAGGCACAAAGTCGCGCGATGTTTGGCGGATTCGATGCCCAGCTCAATCAACTCCATTa                    >  2:1262666/1‑100 (MQ=255)
                                                                                aaCAAAATGGATGGTGCAAATGCACCATCCATTTTTCATGCAAGGCACAAAGTCGCGCGATGTTTGGCGGATTCGATGCCCAGCTCAATCAACTCCATTa                    >  1:800984/1‑100 (MQ=255)
                                                                                aaCAAAATGGATGGTGCAAATGCACCATCCATTTTTCATGCAAGGCACAAAGTCGCGCGATGTTTGGCGGATTCGATGCCCAGCTCAATCAACTCCATTa                    >  1:2119312/1‑100 (MQ=255)
                                                                                 aCAAAATGGATGGTGCAAATGCACCATCCATTTTTCATGCAAGGCACAAAGTCGCGCGATGTTTGGCGGATTCGATGCCCAGCTCAATCAACTCCATTAc                   <  2:943159/100‑1 (MQ=255)
                                                                                 aCAAAATGGATGGTGCAAATGCACCATCCATTTTTCATGCAAGGCACAAAGTCGCGCGATGTTTGGCGGATTCGATGCCCAGCTCAATCAACTCCATTAc                   >  1:1108019/1‑100 (MQ=255)
                                                                                  aaaaaTGGATGGTGCATTTGCACCATCCATTTTTCATGCAAGGCACAAAGTCGCGCGATGTTTGGCGGATTCGATGCCCAGCTCAATCAACTCCATTAc                   >  2:2186103/2‑99 (MQ=255)
                                                                                   aaaaTGGATGGTGCATTTGCACCATCCATTTTTCATGCAAGGCACAAAGTCGCGCGATGTTTGGCGGATTCGATGCCCAGCTCAATCAACTCCATTAcc                  >  1:1628911/1‑99 (MQ=255)
                                                                                   aaaaTGGATGGTGCATTTGCACCATCCATTTTTCATGCAAGGCACAAAGTCGCGCGATGTTTGGCGGATTCGATGCCCAGCTCAATCAACTCCATTACCt                 >  1:1631626/1‑100 (MQ=255)
                                                                                    aaaTGGATGGTGCAAATGCACCATCCATTTTTCATGCAAGGCACAAAGTCGCGCGATGTTTGGCGGATTCGATGCCCAGCTCAATCAACTCCATTACCTg                <  2:38882/100‑1 (MQ=255)
                                                                                     aaTGGATGGTGCAAATGCACCATCCATTTTTCATGTAAGGCACATAGTCGCGCGATGTTTGGCGGATTCGATGCCCATCTCAATCAACTCCATTACCTg                <  2:509159/99‑1 (MQ=255)
                                                                                     aaTGGATGGTGCAAATGCACCATCCATTTTTCATGCAAGGCACAAAGTCGCGCGATGTTTGGCGGATTCGATGCCCAGCTCAATCAACTCCATTACCTgg               >  2:1027486/1‑100 (MQ=255)
                                                                                       tggatggTGCATTTGCACCATCCATTTTTTATTCAATTTACAAAGTCGCGCGATGTTTGGCGGATTCGATGCCCAGCGCAATCAACTCCATTACCt                 >  2:1719559/1‑96 (MQ=25)
                                                                                         gatggTGCATTTGCACCATCCATTTTTCATGCAAGGCACAAAGTCGCGCGATGTTTGGCGGATTCGATGCCCAGCTCAATCAACTCCATTACCTGGATTg           >  1:1415185/1‑100 (MQ=255)
                                                                                           tggTGCAAATGCATCATCCATTTTTCATGCAAGGCACAAAGTCGCGCGATGTTTGGCGGATTCGATGCCCAGCTCAATCAACTCCATTACCTGGATTGcc         <  2:2208178/100‑1 (MQ=255)
                                                                                            ggTGCAAATGCACCATCCATTTTTCATGCAAGGCACAAAGTCGCGCGATGTTTGGCGGATTCGATGCCCAGCTCAATCAACTCCATTACCTGGATTGCCt        >  2:1525967/1‑100 (MQ=255)
                                                                                             gTGCAAATGCACCATCCATTTTTCATGCAAGGCACAAAGTCGCGCGATGTTTGGCGGATTCGATGCCCAGCTCAATCAACTCCATTACCTGGATTGCCTg       >  1:2241274/1‑100 (MQ=255)
                                                                                             gTGCAAATGCACCATCCATTTTTCATGCAAGGCACAAAGTCGCGCGATGTTTGGCGGATTCGATGCCCAGCTCAATCAACTCCATTACCTGGATTGCCTg       >  1:433527/1‑100 (MQ=255)
                                                                                              tGCAAATGCACCATCCATTTTTCATGCAAGGCACAAAGTCGCGCGATGTTTGGCGGATTCGATGCCCAGCTCAATCAACTCCATTACCTGGATTGCCTgg      >  1:304064/1‑100 (MQ=255)
                                                                                                  aaTGCACCATCCATTTTTCATGCAAGGCACAAAGTCGCGCGATGTTTGGCGGATTCGATGCCCAGCTCAATCAACTCCATTACCTGGATTGCCTGGCTTg  <  2:2027062/100‑1 (MQ=255)
                                                                                                   |                                                                                                  
GGCACAGATTAATGGTCTGGAAATGGCTTTCCTCAGCGCTGAGGAAAAACGCGCACTGCGAGAAAAAGTCGCCGCGAAGTAACAAAATGGATGGTGCAAATGCACCATCCATTTTTCATGCAAGGCACAAAGTCGCGCGATGTTTGGCGGATTCGATGCCCAGCTCAATCAACTCCATTACCTGGATTGCCTGGCTTG  >  NC_000913/1703153‑1703350

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: