Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_000913 | 3,646,678 | G→A | 57.3% | G127D (GGC→GAC) | gor → | glutathione oxidoreductase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 3,646,678 | 0 | G | A | 57.3% | 37.3 / 90.8 | 84 | G127D (GGC→GAC) | gor | glutathione oxidoreductase |
Reads supporting (aligned to +/- strand): ref base G (18/18); new base A (23/25); total (41/43) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.87e-01 |
ATTCATACTTCCTATGAAAACGTGCTCGGTAAAAATAACGTTGATGTAATCAAAGGCTTTGCCCGCTTCGTTGATGCCAAAACGCTGGAGGTAAACGGCGAAACCATCACGGCCGATCATATTCTGATCGCCACAGGCGGTCGTCCGAGCCACCCGGATATTCCGGGCGTGGAATACGGTATTGATTCTGATGG > NC_000913/3646581‑3646774 | aTTCATACTTCCTATGAAAACGTGCTCGGTAAAAATAACGTTGATGTAATCAAAGGCTTTGCCCGCTTCGTTGATGCCAAAACGCTGGAGGTAAacgacg < 2:1978946/100‑1 (MQ=255) cATACTTCCTATGAAAACGTGCTCGGTAAAAATAACGTTGATGTAGTCAAAGGCTTTGACCGCTTCGTTGATGACCAAACGCTGGAGGTAAacgacg > 2:1876472/1‑97 (MQ=255) cATACTTCCTATGAAAACGTGCTCGGTAAAAATAACGTTGATGTAATCAAAGGCTTTGCCCGCTTCGTTGATGCCAAAACGCTGGAGGTAAACGGCGaaa > 1:1982036/1‑100 (MQ=255) cATACTTCCTATGAAAACGTGCTCGGTAAAAATAACGTTGATGTAATCAAAGGCTTTGCCCGCTTCGTTGATGCCAAAACGCTGGAGGTAAACGGCGaaa < 1:1190472/100‑1 (MQ=255) aCTTCCTATGAAAACGTGCTCGGTAAAAATAACGTTGATGTAATCAAAGGCTTTGCCCGCTTCGTTGATGCCAAAACGCTGGAGGTAAACGGCGAAACCa > 2:918998/1‑100 (MQ=255) cTTCCTATGAAAACGTGCTCGGTAAAAATAACGTTGATGTAATCAAAGGCTTTGCCCGCTTCGTTGATGCCAAAACGCTGGAGGTAAACGACGAAACCAt < 1:1854484/100‑1 (MQ=255) ttCCTATGAAAACGTGCTCGGTAAAAATAACGTTGATGTAATCAAAGGCTTTGCCCGCTTCGTTGATGCCAAAACGCTGGAGGTAAACGGCGAAACCATc < 1:1045765/100‑1 (MQ=255) ccTATGAAAACGTGCTCGGTAAAAATAACGTTGATGTAATCAAAGGCTTTGCCCGCTTCGTTGATGCCAAAACGCTGGAGGTAAATGGCGAAACCATCAc > 2:617781/1‑100 (MQ=255) aTGAAAACGTGCTCGGTAAAAATAACGTTGATGTAATCAAAGGCTTTGCCCGCTTCGTTGATGCCAAAATGCTGGTGGTTATCGGCGAAACCATCACGGc < 2:542655/100‑1 (MQ=255) aTGAAAACGTGCTCGGTAAAAATAACGTTGATGTAATCAAAGGCTTTGCCCGCTTCGTTGATGCCAAAACGCTGGAGGTAAACGGCGAAACCATCCCGGc < 2:1668781/100‑1 (MQ=255) aTGAAAACGTGCTCGGTAAAAATAACGTTGATGTAATCAAAGGCTTTGCCCGCTTCGTTGATGCCAAAACGCTGGAGGTAAACGGCGAAACCATCACGGc > 1:2245937/1‑100 (MQ=255) tGAAAACGTGCTCGGTAAAAATAACGTTGATGTAATCAAAGGCTTTGCCCGCTTCGTTGATGCCAAAACGCTGGAGGTAAACGACGAAACCATCACg > 2:1921473/1‑97 (MQ=255) tGAAAACGTGCTCGGTAAAAATAACGTTGATGTAATCAAAGGCTTTGCCCGCTTCGTTGATGCCAAAACGCTGGAGGTAAACGACGAAACCATCACGGcc < 1:1849257/100‑1 (MQ=255) aaaaCGTGCTCGGTAAAAATAACGTTGATGTAATCAAAGGCTTTGCCCGCTTCGTTGATGCCAAAACGCTGGAGGTAAACGACGAAACCATCACGGCCGa > 1:702215/1‑100 (MQ=255) aaaCGTGCTCGGTAAAAATAACGTTGATGTAATCAAAGGCTTTGCCCGCTTCGTTGATGCCAAAACGCTGGAGGTAAACGGCGAAACCATCACGGCCGAt < 1:1756590/100‑1 (MQ=255) aaCGTGCTCGGTAAAAATAACGTTGATGTAATCAAAGGCTTTGCCCGCTTCGTTGATGCCAAAACGCTGGAGGTAAACGACGAAACCATCACGGCCGATc < 2:282167/100‑1 (MQ=255) aaCGTGCTCGGTAAAAATAACGTTGATGTAATCAAAGGCTTTGCCCGCTTCGTTGATGCCAAAACGCTGGAGGTAAACGACGAAACCATCACGGCCGATc < 1:1689088/100‑1 (MQ=255) tGCTCGGTAAAAATAACGTTGATGTAATCAAAGGCTTTGCCCGCTTCGTTGATGCCAAAACGCTGGAGGTAAACGGCGAAACCATCACGGCCGATCatat < 1:1359056/100‑1 (MQ=255) gCTCGGTAAAAATAACGTTGATGTAATCAAAGGCTTTGCCCGCTTCGTTGATGCCAAAACGCTGGAGGTAAACGACGCAACCATCACGGCCGATCATAtt > 2:319796/1‑100 (MQ=255) cTCGGTAAAAATAACGTTGATGTAATCAAAGGCTTTGCCCGCTTCGTTGATGCCAAAACGCTGGAGGTAAACGGCGAAACCATCACGGCCGATCATATTc < 1:918999/100‑1 (MQ=255) tCGGTAAAAATAACGTTGATGTAATCAAAGGCTTTGCCCGCTTCGTTGATGCCAAAACGCTGGAGGTAAACGACGAAACCATCACGGCCGATCATATTCt > 1:1430674/1‑100 (MQ=255) cGGTAAAAATAACGTTGATGTAATCAAAGGCTTTGCCCGCTTCGTTGATGCCAAAACGCTGGAGGTAAACGGCGAAACCATCACGGCCGATCATATTCTg < 1:1771885/100‑1 (MQ=255) cGGTAAAAATAACGTTGATGTAATCAAAGGCTTTGCCCGCTTCGTTGATGCCAAAACGCTGGAGGTAAACGACGAAACCATCACGTCCGATCATATTCTg > 1:886222/1‑100 (MQ=255) tAAAAATAACGTTGATGTAATCAAAGGCTTTGCCCGCTTCGTTGATGCCAAAACGCTGGAGGTAAACGACGAAACCATCACGGCCGATCATATTCTGATc > 2:1722102/1‑100 (MQ=255) aaaaaTAACGTTGATGTAATCAAAGGCTTTGCCCGCTTCGTTGATGCCAAAACGCTGGAGGTAAACGACGAAACCATCACGGCCGATCATATTCTGATCg > 1:588345/1‑100 (MQ=255) aaaTAACGTTGATGTAATCAAAGGCTTTGCCCGCTTCGTTGATGCCAAAACGCTGGAGGTAAACGGCGAAACCATCACGGCCGATCATATTCTGATCGcc < 2:582646/100‑1 (MQ=255) aaaTAACGTTGATGTAATCAAAGGCTTTGCCCGCTTCGTTGATGCCAAAACGCTGGAGGTAAACGGCGAAACCATCACGGCCGATCATATTCTGATCGcc < 2:1679975/100‑1 (MQ=255) aaaTAACGTTGATGTAATCAAAGGCTTTGCCCGCTTCGTTGATGCCAAAACGCTGGAGGTAAACGGCGAAACCATCACGGCCAATCATATTCTGATCGcc < 2:1126009/100‑1 (MQ=255) aTAACGTTGATGTAATCAAAGGCTTTGCCCGCTTCGTTGATGCCAAATCGCTGGAGGTAAACGACGAAACCATCACGGCCGATCATATTCTGATCGCcac < 2:571648/100‑1 (MQ=255) tAACGTTGATGTAATCAAAGGCTTTGCCCGCTTCGTTGATGCCACAACGCTGGAGGTAAACGGCGAAACCATCACGGCCGATCATATTCTAATCGCcaca > 1:691688/1‑100 (MQ=255) tAACGTTGATGTAATCAAAGGCTTTGCCCGCTTCGTTGATGCCAAAACGCTGGAGGTAAACGGCGAAACCATCACGGCCGATCATATTCTGATCGCcaca < 1:1018683/100‑1 (MQ=255) tAACGTTGATGTAATCAAAGGCTTTGCCCGCTTCGTTGATGCCAAAACGCTGGAGGTAAACGGCGAAACCATCACGGCCGATCATATTCTGATCGCcaca < 2:853030/100‑1 (MQ=255) aaCGTTGATGTAATCAAAGGCTTTGCCCGCTTCGTTGATGCCAAAACGCTGGAGGTAAACGGCGAAACCATCACGGCCGATCATATTCTGATCGCCACAg > 2:1114430/1‑100 (MQ=255) aaCGTTGATGTAATCAAAGGCTTTGCCCGCTTCGTTGATGCCAAAACGCTGGAGGTAAACGACGAAACCATCACGGCCGATCATATTCTGATCGCCACAg < 2:1256441/100‑1 (MQ=255) gTTGATGTAATCAAAGGCTTTGCCCGCTTCGTTGATGCCAAAACGCTGGAGGTAAACGACGAAACCATCACGGCCGATCATATTCTGATCGCCACAGGCg < 2:365419/100‑1 (MQ=255) ttGATGTAATCAAAGGCTTTGCCCGCTTCGTTGATGCGAAAACGCTGGAGGTAAACGACGAAACCATCACGGCCGATCATATTCTGATCGCCACAGGCgg > 2:1192951/1‑100 (MQ=255) ttGATGTAATCAAAGGCTTTGCCCGCTTCGTTGATGCCAAAACGCTGGAGGTAAACGACGAAACCATCACGGCCGATCATATTCTGATCGCCACAGGCgg < 1:1829066/100‑1 (MQ=255) tGATGTAATCAAAGGCTTTGCCCGCTTCGTTGATGCCAAAACGCTGGAGGTAAACGGCGAAACCATCACGGCCGATCATATTCTGATCGCCACAGGCg > 1:756985/1‑98 (MQ=255) tGATGTAATCAAAGGCTTTGCCCGCTTCGTTGATGCCAAAACGCTGGAGGTAAACGACGAAACCATCACGGCCGATCATATTCTGATCGCCACAGGCGgt < 1:1287448/100‑1 (MQ=255) gATGTAATCAAAGGCTTTGCCCGCTTCGTTGATGCCAAAACGCTGGAGGTAAACGGCGAAACCATCACGGCCGATCATATTCTGATCGCCACAGGCGgtc > 1:1174325/1‑100 (MQ=255) gATGTAATCAAAGGCTTTGCCCGCTTCGTTGATGCCAAAACGCTGGAGGTAAACGACGAAACCATCACGGCCGATCATATTCTGATCGCCACAGGCGgtc > 1:1383679/1‑100 (MQ=255) aTGTAATCAAAGGCTTTGCCCGCTTCGTTGATGCCAAAACGCTGGAGGTAAACGACGAAACCATCACGGCCGATCATATTCTGATCGCCACAGGCGgtcg > 1:259227/1‑100 (MQ=255) tGTAATCAAAGGCTTTGCCCGCTTCGTTGATGCCAAAACGCTGGAGGTAAACGACGAAACCATCACGGCCGATCATATTCTGATCGCCACAGGCGgtcgt > 2:1051542/1‑100 (MQ=255) tGTAATCAAAGGCTTTGCCCGCTTCGTTGATGCCAAAACGCTGGAGGTAAACGACGAAACCATCACGGCCGATCATATTCTGATCGCCACAGGCGgtcgt > 2:1194313/1‑100 (MQ=255) aaTCAAAGGCTTTGCCCGCTTCGTTGATGCCAAAACGCTGGAGGTAAACGACGAAACCATCACGGCCGATCATATTCTGATCGCCACAGGCGGTCGTCCg < 2:1255255/100‑1 (MQ=255) aTCAAAGTCTTTGCCCGCTTCGTTGATGCCAAAAAGCAGGAGGTACACGGCGAGACCATCACAACCGATCAGATTATGATCGCCACAAGCGGTCGTCCGa > 2:1855935/1‑100 (MQ=255) aTCAAAGGCTTTGCCCGCTTCGTTGATGCCAAAACGCTGGAGGTAAACGGCGAAACCATCACGGCCGATCATATTCTGATCGCCACAGGCGGTCGTCCGa > 1:1781644/1‑100 (MQ=255) cAAAGGCTTTGCCCGCTTCGTTGATGCCAAAACGCTGGAGGTAAACGGCGAAACCATCACGGCCGATCATATTCTGATCGCCACAGGCGGTCGTCCGAGc > 1:147005/1‑100 (MQ=255) aaaGGCTTTGCCCGCTTCGTTGATGCCAAAACGCTGGAGGTAAACGGCGAAACCATCACGGCCGATCATATTCTGATCGCCACAGGCGGTCGTCCGAGcc > 1:1850959/1‑100 (MQ=255) tttGCCCGCTTCGTTGATGCCAAAACGCTGGAGGTAAACGACGAAACCATCACGGCCGATCATATTCTGATCGCCACAGGCGGTCGACCGAGCCACCCgg < 2:1383673/100‑1 (MQ=255) tGCCCGCTTCGTTGATGCCAAAACGCTGGAGGTAAACGACGAAACCATCACGGCCGATCATATTCTGATCGCCACAGGCGGTCGTCCGAGCCACCCGGat > 2:353947/1‑100 (MQ=255) gCCCGCTTCGTTGATGCCAAAACGCTGGAGGTAAACGACGAAACCATCACGGCCGATCATATTCTGATCGCCACAGGCGGTCGTCCGAGCCACCCGGata > 1:31782/1‑100 (MQ=255) ccGCTTCGTTGATGCCAAAACGCTGGAGGTAAACGACGAAACCATCACGGCCGATCATATTCTGATCGCCACAGGCGGTCGTCCGAGCCACCCGGATAtt > 1:49282/1‑100 (MQ=255) cGCTTCGTTGATGCCAAAACGCTGGAGGTAAACGGCGAAACCATCACGGCCGATCATATTCTGATCGCCACAGGCGGTCGTCCGAGCCACCCGGATATTc > 1:1168041/1‑100 (MQ=255) cGCTTCGTTGATGCCAAAACGCTGGAGGTAAACGACGAAACCATCACGGCCGATCATATTCTGATCGCCACAGGCGGTCGTCCGAGCCACCCGGATATTc < 1:73595/100‑1 (MQ=255) gCTTCGTTGATGCCAAAACGCTGGAGGTAAACGACGAAACCATCACGGCCGATCATATTCTGATCGCCACAGGCGGTCGTCCGAGCCACCCGGaatatcc < 2:247646/100‑7 (MQ=255) ttCGTTGATGTCCAAACGCTGGAGGTAAACGACGAAACCATCACGGCCGATCATATTCTGATCGCAACAGGCGTTCGTCTGAGCCACCCGGATATTCCgg < 2:937952/100‑1 (MQ=255) ttCGTTGATGCCAAAACGCTGGAGGTAAACGACGAAACCATCACGGCCGATCATATTCTGATCGCCACAGGCGGTCGTCCGAGCCACCCGGATATTCCgg < 1:421891/100‑1 (MQ=255) tCGTTGATGCCAAAACGCTGGAGGTAAACGACGAAACCATCACGGCCGATCATATTCTGATCGCCACAGGCGGTCGTCCGAGCCACCCGGATATTCCggg < 2:134994/100‑1 (MQ=255) tCGTTGATGCCAAAACGCTGGAGGTAAACGACGAAACCATCACGGCCGATCATATTCTGATCGCCACAGGCGGTCGTCCGAGCCACCCGGATATTCCggg < 1:1362645/100‑1 (MQ=255) cGTTGATGCCAAAACGCTGGAGGTAAACGACGAAACCATCACGGCCGATCATATTCTGATCGCCACAGGCGGTCGTCCGAGCCACCCGGATATTCCGGGc > 2:1108980/1‑100 (MQ=255) gTTGATGCCAAAACGCTGGAGGTAAACGGCGAAACCATCACGGCCGATCATATTCTGATCGCCACAGGCGGTCGTCCGAGCCACCCGGATATTCCGGGCg < 1:639596/100‑1 (MQ=255) gATGCCAAAACGCTGGAGGTAAACGACGAAACCATCACGGCCGATCATATTCTGATCGCCACAGGCGGTCGTCCGAGCCACCCGGATATTCCGGGCGTgg > 2:747540/1‑100 (MQ=255) gATGCCAAAACGCTGGAGGTAAACGACGAAACCATCACGGCCGATCATATTCTGATCGCCACAGGCGGTCGTCCGAGCCACCCGGATATTCCGGGCGTgg < 2:1659393/100‑1 (MQ=255) tGCCAAATCTTTGGAGGTAATTTGCGTATTCTTCTCGTCTGATCATATTCTGATCGCCACAGGCGGTCGTCCGGGCCACCCGGATATTCCGGGCGTgg < 1:115859/98‑1 (MQ=255) gCCAAAACGCTGGAGGTAAACGACGAAACCATCACGGCCGATCATATTCTGATCGCCACAGGCGGTCGTCCGAGCCACCCGGATATTCCGGGCGTGGAAt < 1:441037/100‑1 (MQ=255) gCCAAAACGCTGGAGGTAAACGACGAAACCATCACGGCCGATCATATTCTGATCGCCACAGGCGGTCGTCCGAGCAACCCGGATATTCCGGGCGTGGAAt > 2:211204/1‑100 (MQ=255) gCCAAAACGCTGGAGGTAAAAGGAGAAACCAGCACGGCCGATCAGATTCTGATCGCCACAGGCGGGCCTCCGAGCCACCCGGATATTTCGGGCGAGGa > 2:1940999/1‑98 (MQ=255) ccAAAACGCTGGAGGTAAACGGCGAAACCATCACGGCCGATCATATTCTGATCGCCACAGGCGGTCGTCCGAGCCACCCGGATATTCCGGGCGTGGAATa > 1:1321523/1‑100 (MQ=255) ccAAAACGCTGGAGGTAAACGACGAAACCATCACGGCCGATCATATTCTGATCGCCACAGGCGGTCGTCCGAGCCACCCGGATATTCCGGGCGTGGAATa > 1:1424778/1‑100 (MQ=255) ccAAAACGCTGGAGGTAAACGACGAAACCATCACGGCCGATCATATTCTGATCGCCACAGGCGGTCGTCCGAGCCACCCGGATATTCCGGGCGTGGAATa > 1:942793/1‑100 (MQ=255) cAAAACGCTGGAGGTAAACGACGAAACCATCACGGCCGATCATATTCTGATCGCCACAGGCGGTCATCCGAGCCACCCGGATATTCCGGGCGTGGACTAc > 1:303095/1‑100 (MQ=255) aaaCGCTGGAGGTAAACGGCGAAACCATCACGGCCGATCATATTCTGATCGCCACAGGCGGTCGTCCGAGCCACCCGGATATTCCGGGCGTGGAATACgg < 1:200266/100‑1 (MQ=255) aaCGCTGGAGGTAAACGACGAAACCATCACGGCCGATCATATTCTGATCGCCACAGGCGGTCGTCCGAGCCACCCGGATATTCCGGGCGTGGAATACGGt < 1:2035984/100‑1 (MQ=255) cTGGAGGTAAACGGCGAAACCATCACGGCCGATCATATTCTGATCGCCACAGGCGGTCGTCCGAGCCACCCGGATATTCCGGGCGTGGAATACGGTATTg < 1:1135652/100‑1 (MQ=255) ggAGGTAAACGGTGAAACCATCACTGACGTTCATATTCTGATCGCCACAGGCTGTCGTCCGAGCCACCTGGATATTCCGGGCGTGGAATACGGTATTGAt < 2:486820/100‑1 (MQ=255) ggAGGTAAACGGCGAAACCATCACGGCCGATCATATTCTGATCGCCACAGGCGGTCGTCCGAGCCACCCGGATATTCCAGGCGTGGAATACGGTATTGAt > 2:29307/1‑100 (MQ=255) aGGTAAACGACGAAACCATCACGGCCGATCATATTCTGATCGCCACAGGCGGTCGTCCGAGTCACTCGGATATTCCGGGCGTGGAATACGGTATTGAtt < 2:1113314/99‑1 (MQ=255) aGGTAAACGACGAAACCATCACGGCCGATCATATTCTGATCGCCACAGGCGGTCGTCCGAGCCACCCGGATATTCCGGGCGTGGAATACGGTATTGATTc < 1:211204/100‑1 (MQ=255) aGGTAAACGACGAAACCATCACGGCCGATCATATTCTGATCGCCACAGGCGGTCGTCCGAGCCACCCGGATATTCCGGGCGTGGAATACGGTATTGATTc < 1:1997848/100‑1 (MQ=255) ggTAAACGGCGAAACCATCACGGCCGATCATATTCTGATCGCCACAGGCGGTCGTCCGAGCCACCCGGATATTCCGGGCGTGGAATACGGTATTGATTCt > 1:928854/1‑100 (MQ=255) tAAACTACGAAACCATCACGGCCGATCATATTCTGATCGCCACAGGCGGTCGTCCGAGCCACCCGGATATTCCGGGCGTGGAATACGGTATTGAt < 1:604571/95‑1 (MQ=255) tAAACGGCGAAACCATCACGGCCGATCATATTCTGATCGCCACAGGCGGTCGTCCGAGCCACCCGGATATTCCGGGCGTGGAATACGGAATTGATTc > 1:1728335/1‑97 (MQ=255) tAAACGACGAAACCATCACGGCCGATCATATTCTGATCGCCACAGGCGGTCGTCCGAGCCACCCGGATATTCCGGGCGTGGAATACGGTATTGATTCTGa > 1:2034709/1‑100 (MQ=255) aaaCGACGAAACCATCACGGCCGATCATATTCTGATCGCCACAGGCGGTCGTCCGAGCCACCCGGATATTCCGGGCGTGGAATACGGTATTGATTCTGAt < 2:702215/100‑1 (MQ=255) aaaCGACGAAACCATCACGGCCGATCATATTCTGATCGCCACAGGCGGTCGTCCGAGCCACCCGGATATTCCGGGCGTGGAATACGGTATTGATTCTGAt > 2:1047436/1‑100 (MQ=255) acgacgAAACCATGACGGCCGAGCATAGTGTGATCGCCACAGGCGGTTGTGCGAGACACCCGGATATTACGGGCGTGGAATACGGTCTTGATGCTGATgg < 2:1320088/100‑1 (MQ=255) acgacgAAACCATCACGGCCGATCATATTCTGATCGCCACAGGCGGTCGTCCGAGCCACCCGGATATTCCGGGCGTGGAATACGGTATTGATTCTGATgg > 2:633781/1‑100 (MQ=255) | ATTCATACTTCCTATGAAAACGTGCTCGGTAAAAATAACGTTGATGTAATCAAAGGCTTTGCCCGCTTCGTTGATGCCAAAACGCTGGAGGTAAACGGCGAAACCATCACGGCCGATCATATTCTGATCGCCACAGGCGGTCGTCCGAGCCACCCGGATATTCCGGGCGTGGAATACGGTATTGATTCTGATGG > NC_000913/3646581‑3646774 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |