Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,769,648 (C)6→5 intergenic (+162/‑55) yfjQ → / → yfjR CP4‑57 prophage; uncharacterized protein/CP4‑57 prophage; putative DNA‑binding transcriptional regulator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,769,6430C.99.1% 469.2 / ‑2.7 105intergenic (+157/‑60)yfjQ/yfjRCP4‑57 prophage; uncharacterized protein/CP4‑57 prophage; putative DNA‑binding transcriptional regulator
Reads supporting (aligned to +/- strand):  ref base C (0/0);  major base . (53/51);  minor base T (0/1);  total (53/52)
Fisher's exact test for biased strand distribution p-value = 4.95e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.95e-01

Only 100 of 112 total aligned reads displayed.

CGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCCTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGACACAGGCAGAACGCCGCCATGACCGGCTGGC  >  NC_000913/2769546‑2769737
                                                                                                 |                                                                                              
cGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGccc                                                                                              <  2:2987178/100‑1 (MQ=255)
 gtgtGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGcccc                                                                                             >  1:175666/1‑100 (MQ=255)
  tgtgCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGccccc                                                                                            <  1:477334/100‑1 (MQ=255)
   gtgCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATTAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGccccc                                                                                            >  2:1522371/1‑99 (MQ=255)
      ccTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGcccactctt                                                                                        >  2:1052722/1‑94 (MQ=255)
       cTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCTCttt                                                                                      >  1:170514/1‑100 (MQ=255)
       cTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCTCttt                                                                                      <  2:1714229/100‑1 (MQ=255)
        tCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTa                                                                                     >  2:169758/1‑100 (MQ=255)
         cAATCGCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTaa                                                                                    >  2:2225665/1‑100 (MQ=255)
         cAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTaa                                                                                    >  2:2464598/1‑100 (MQ=255)
           aTCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAg                                                                                  <  2:200577/100‑1 (MQ=255)
           aTCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAg                                                                                  <  1:2180107/100‑1 (MQ=255)
             cccccGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATCGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTa                                                                                >  2:1503939/1‑100 (MQ=255)
              ccccGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTaa                                                                               >  1:1176304/1‑100 (MQ=255)
              ccccGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTaa                                                                               <  2:1433426/100‑1 (MQ=255)
              ccccGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTaa                                                                               >  1:1484239/1‑100 (MQ=255)
              ccccGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTaa                                                                               <  2:922026/100‑1 (MQ=255)
               cccGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGCCCATACCCTGTCCGCCCCCTCTTTAAAGTAAt                                                                              >  1:785272/1‑100 (MQ=255)
                ccGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTAATc                                                                             <  1:1804475/100‑1 (MQ=255)
                ccGGTTATAGCTTTTAACCCCCGTTACATCTGGCTAAAAAAAAAAAAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTAATc                                                                             <  2:2235444/100‑1 (MQ=21)
                  ggTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTAATcac                                                                           <  1:2389481/100‑1 (MQ=255)
                    ttATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTAATCAcat                                                                         <  1:2066324/100‑1 (MQ=255)
                      ataGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAGGTAATCAcatca                                                                       >  1:1022093/1‑100 (MQ=255)
                      ataGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTAATCAcatca                                                                       >  1:382145/1‑100 (MQ=255)
                      ataGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTGCTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTAATCAcatca                                                                       <  1:2094085/100‑1 (MQ=255)
                       taGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTAATCAcatcat                                                                      <  2:2165948/100‑1 (MQ=255)
                       taGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTAATCAcatcat                                                                      >  1:986053/1‑100 (MQ=255)
                          cTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTAATCACATCAtttt                                                                   >  2:1140965/1‑100 (MQ=255)
                          cTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTAATCACATCAtttt                                                                   >  1:2359052/1‑100 (MQ=255)
                             ttAACCCCCGTTACATCTGGCTTTTGCAGAGATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTAATCACATCATTTtcag                                                                <  1:1911517/100‑1 (MQ=255)
                             ttAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTAATCACATCATTTtcag                                                                >  1:2421542/1‑100 (MQ=255)
                              tAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTAATCACATCATTTtcagt                                                               >  1:1453838/1‑100 (MQ=255)
                               aaCCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTAATCACATCATTTtc                                                                  <  2:1701146/96‑1 (MQ=255)
                                aCCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTAATCACATCATTTtcagtca                                                             >  1:2093603/1‑100 (MQ=255)
                                 cccccGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTAATCACATCATTTtcagtcag                                                            <  1:634059/100‑1 (MQ=255)
                                 cccccGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTAATCACATCATTTtcagtcag                                                            <  1:633592/100‑1 (MQ=255)
                                 cccccGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTAATCACATCATTTtcagtcag                                                            >  1:1529156/1‑100 (MQ=255)
                                 cccccGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTAATCACATCATTTtcagtcag                                                            <  1:1168584/100‑1 (MQ=255)
                                 cccccGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTAATCACATCATTTtcagtcag                                                            <  1:1167720/100‑1 (MQ=255)
                                    ccGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTAATCACATCATTTTCAGTCAGTTa                                                         <  1:1441997/100‑1 (MQ=255)
                                      gTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAAc                                                       <  1:1037495/100‑1 (MQ=255)
                                      gTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAAc                                                       >  1:1358117/1‑100 (MQ=255)
                                      gTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAAc                                                       <  1:2182219/100‑1 (MQ=255)
                                        tACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACtt                                                     >  2:2857644/1‑100 (MQ=255)
                                            tCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCt                                                 >  2:3005011/1‑100 (MQ=255)
                                              tGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTgg                                               <  1:2413267/100‑1 (MQ=255)
                                              tGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTgg                                               <  2:1262167/100‑1 (MQ=255)
                                               ggCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGga                                              >  1:2545827/1‑100 (MQ=255)
                                                gCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGgag                                             <  2:1730262/100‑1 (MQ=255)
                                                 cTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGgaga                                            <  1:794373/100‑1 (MQ=255)
                                                   tttGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAAt                                          >  1:1044262/1‑100 (MQ=255)
                                                   tttGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAAt                                          <  1:1036032/100‑1 (MQ=255)
                                                      gCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAAtctc                                       >  1:218677/1‑100 (MQ=255)
                                                      gCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAAtctc                                       >  2:1140250/1‑100 (MQ=255)
                                                      gCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAAtctc                                       >  1:951088/1‑100 (MQ=255)
                                                      gCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAAtctc                                       >  1:68858/1‑100 (MQ=255)
                                                      gCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAACTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAAtctc                                       >  2:1951995/1‑100 (MQ=255)
                                                       cAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAAtctct                                      >  1:1698219/1‑100 (MQ=255)
                                                       cAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAAtctct                                      >  2:2649894/1‑100 (MQ=255)
                                                        aGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAAtctctc                                     <  2:237219/100‑1 (MQ=255)
                                                         gAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCa                                    <  1:1822473/100‑1 (MQ=255)
                                                          aaaTAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCAt                                   <  2:1011884/100‑1 (MQ=255)
                                                          aaaTAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCAt                                   <  2:1228534/100‑1 (MQ=255)
                                                           aaTAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATg                                  <  1:1522389/100‑1 (MQ=255)
                                                            aTAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGa                                 >  2:1649269/1‑100 (MQ=255)
                                                             tAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGac                                <  1:1038692/100‑1 (MQ=255)
                                                              aaaaaaTAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGaca                               >  1:641602/1‑100 (MQ=255)
                                                                   agaGTTTCTGCGTTGTCCATACCCTGTTCTCCCCCTCTTGAAAGTAATCAAATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGACACAGGc                          <  1:1787510/98‑1 (MQ=17)
                                                                   aTAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGACACAGGc                          <  2:2041486/100‑1 (MQ=255)
                                                                   aTAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCTCGTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTGCCTGGAGAATCTCTCATGACACAGGc                          <  2:2096019/100‑1 (MQ=17)
                                                                   aTAGTTTCTGCGTTATCCATACCCTGTCCGCCCCCTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGACACAGGc                          <  2:2075477/100‑1 (MQ=255)
                                                                    tAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGACACAGGCa                         <  1:965146/100‑1 (MQ=255)
                                                                     aGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGACACAGGCAg                        <  2:450345/100‑1 (MQ=255)
                                                                      gTTTCTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGACACAGGCAGa                       >  1:204222/1‑100 (MQ=255)
                                                                        ttCTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGACACAGGCAGAAc                     >  1:2669869/1‑100 (MQ=255)
                                                                        ttCTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGACACAGGCAGAAc                     >  1:2520153/1‑100 (MQ=255)
                                                                        ttCTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGACACAGGCAGAAc                     <  2:2093576/100‑1 (MQ=255)
                                                                        ttCTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGACACAGGCAGAAc                     <  1:1933790/100‑1 (MQ=255)
                                                                         tCTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGACACAGGCAGAAcg                    >  2:2599885/1‑100 (MQ=255)
                                                                          cTGCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGACACAGGCAGAAcgc                   >  1:790355/1‑100 (MQ=255)
                                                                           tGCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGACACAGGCAGAAcgcc                  >  1:497179/1‑100 (MQ=255)
                                                                           tGCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGACACAGGCAGAAcgcc                  >  2:1326639/1‑100 (MQ=255)
                                                                            gCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGACACAGGCAGAAcgccg                 >  1:402310/1‑100 (MQ=255)
                                                                            gCGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGACACAGGCAGAAcgccg                 >  1:1967415/1‑100 (MQ=255)
                                                                             cGTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGACACAGGCAGAAcgccgc                >  1:1003111/1‑100 (MQ=255)
                                                                              gTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGACACAGGCAGAACgccgcc               <  2:2969200/100‑1 (MQ=255)
                                                                              gTTGTCCATACCCTGTCCGCCCCCTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGACACAGGCAGAACgccgcc               >  1:2266888/1‑100 (MQ=255)
                                                                                   ccATACCCTGTCCGCCCCCTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGACACAGGCAGAACGCCGCCATGAc          >  2:2402305/1‑100 (MQ=255)
                                                                                   ccATACCCTGTCCGCCCCCTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGACACAGGCAGAACGCCGCCATGAc          >  2:2627178/1‑100 (MQ=255)
                                                                                   ccATACCCTGTCCGCCCCCTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGACACAGGCAGAACGCCGCCATGAc          <  2:2940797/100‑1 (MQ=255)
                                                                                   ccATACCCTGTCCGCCCCCTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGACACAGGCAGAACGCCGCCATGAc          >  1:982975/1‑100 (MQ=255)
                                                                                    cATACCCTGTCCGCCCCCTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGACACAGGCAGAACGCCGCCATGAcc         >  1:1688712/1‑100 (MQ=255)
                                                                                      tACCCTGTCCGCCCCCTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGACACAGGCAGAACGCCGCCATGACCgg       <  2:2421510/100‑1 (MQ=255)
                                                                                       aCCCTGTCCGCCCCCTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGACACAGGCAGAACGCCGCCATGACCggc      >  2:1208540/1‑100 (MQ=255)
                                                                                       aCCCTGTCCGCCCCCTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGACACAGGCAGAACGCCGCCATGACCggc      <  1:2461068/100‑1 (MQ=255)
                                                                                        cccTGTCCGCCCCCTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGACACAGGCAGAACGCCGCCATGACCggct     >  2:2491781/1‑100 (MQ=255)
                                                                                         ccTGTCCGCCCCCTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGACACAGGCAGAACGCCGCCATGACCggctg    >  1:1356599/1‑100 (MQ=255)
                                                                                         ccTGTCCGCCCCCTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGACACAGGCAGAACGCCGCCATGACCggctg    <  2:497172/100‑1 (MQ=255)
                                                                                           tGTCCGCCCCCTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGACACAGGCAGAACGCCGCCATGACCggctggc  <  2:1176292/100‑1 (MQ=255)
                                                                                           tGTCCGCCCCCTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGACACAGGCAGAACGCCGCCATGACCggctggc  <  1:835425/100‑1 (MQ=255)
                                                                                                 |                                                                                              
CGTGTGCCTCAATCCCCCGGTTATAGCTTTTAACCCCCGTTACATCTGGCTTTTGCAGAAATAAAAAATAGTTTCTGCGTTGTCCATACCCTGTCCGCCCCCCTCTTTAAAGTAATCACATCATTTTCAGTCAGTTAACTTTCCTGGAGAATCTCTCATGACACAGGCAGAACGCCGCCATGACCGGCTGGC  >  NC_000913/2769546‑2769737

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: