| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,560,321 | 0 | C | T | 24.3% | 265.6 / 84.0 | 140 | A22V (GCT→GTT) | yffL | CPZ‑55 prophage; uncharacterized protein |
| Reads supporting (aligned to +/- strand): ref base C (39/67); new base T (20/14); total (59/81) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.88e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.48e-01 | |||||||||||
Only 100 of 152 total aligned reads displayed.
TGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCC‑GGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGTAGAACAAGAAACAAACAATGATGTTCGTCA > NC_000913/2560222‑2560420 | tGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCGGGAAtgc < 2:1942250/100‑1 (MQ=255)tGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAAtgc < 2:555699/100‑1 (MQ=255) ggAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAAtgct > 2:2215002/1‑100 (MQ=255) ggAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAAtgct > 1:39060/1‑100 (MQ=255) ggAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAAtgct > 2:1577796/1‑100 (MQ=255) gAATAAATTATTCGATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAAtgctg < 2:1579895/100‑1 (MQ=255) gAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAAtgctg < 2:2399734/100‑1 (MQ=255) aaTAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAAtgctgc < 2:2287473/100‑1 (MQ=255) aaaTTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAAc < 1:101980/100‑1 (MQ=255) aaTTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACa > 2:2361840/1‑100 (MQ=255) aaTTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACa > 1:194519/1‑100 (MQ=255) attattCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACAt < 1:1383540/100‑1 (MQ=255) attCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGcc < 1:62183/100‑1 (MQ=255) ttCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGcc > 2:2815498/1‑99 (MQ=255) tCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGCATGTTGCAGCATTCC‑gg < 1:12822/100‑1 (MQ=38) cAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGCATGTTGCAGCATTCC‑ggg < 2:2473428/100‑1 (MQ=38) cAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCACCATGcc > 2:636395/1‑97 (MQ=255) cAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCC‑ggg < 1:432433/100‑1 (MQ=255) cAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCC‑ggg > 2:1581854/1‑100 (MQ=255) cAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCC‑ggg < 2:74784/100‑1 (MQ=255) aaTATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGCATGTTGCAGCATTCC‑gggg < 1:1066831/100‑1 (MQ=38) atatCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGCATGTTGCAGCATTCC‑ggggg < 1:2446359/100‑1 (MQ=38) atatCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCC‑ggggg < 2:2133298/100‑1 (MQ=255) tatCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGCATGTTGCAGCATTCC‑GGGGGc < 2:3024640/100‑1 (MQ=38) tatCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCC‑GGGGGc < 1:1264433/100‑1 (MQ=255) atCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCC‑GGGGGCg < 1:984968/100‑1 (MQ=255) tCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCC‑GGGGGCgg < 1:2306916/100‑1 (MQ=255) tCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCC‑GGGGGCgg < 1:2599976/100‑1 (MQ=255) tCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCC‑GGGGGCgg > 1:353124/1‑100 (MQ=255) cAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGCATGTTGCAGCATTCC‑GGGGGcttt < 1:2348703/100‑4 (MQ=37) cAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCC‑GGGGGCGGt > 1:154583/1‑100 (MQ=255) aaGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCC‑GGGGGCGGTa > 2:1439880/1‑100 (MQ=255) aGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCC‑GGGGGCGGTAt < 1:993643/100‑1 (MQ=255) aGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCC‑GGGGGCGGTAt > 2:728494/1‑100 (MQ=255) aaCTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCC‑GGGGGCGGTATga < 1:909262/100‑1 (MQ=255) cTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCC‑GGGGGCGGTATgaga > 1:524184/1‑100 (MQ=255) cTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCC‑GGGGGCGGTATgaga < 1:913302/100‑1 (MQ=255) tAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCC‑GGGGGCGGTATGAGaaa > 2:2863172/1‑100 (MQ=255) tAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCC‑GGGGGCGGTATGAGaaa > 1:2321110/1‑100 (MQ=255) aaaTCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCC‑GGGGGCGGTATGAGAAAc < 1:37494/100‑1 (MQ=255) aaaTCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCC‑GGGGGCGGTATGAGAAAc < 1:688556/100‑1 (MQ=255) aaTCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCC‑GGGGGCGGTATGAGAAACa > 2:1142663/1‑100 (MQ=255) aaTCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCC‑GGGGGCGGTATGAGAAACa < 1:1427368/100‑1 (MQ=255) aaTCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCC‑GGGGGCGGTATGAGAAACa < 1:2561722/100‑1 (MQ=255) aaTCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCC‑GGGGGCGGTATGAGAAACa > 2:525650/1‑100 (MQ=255) aTCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCC‑GGGGGCGGTATGAGAAACaa < 1:799409/100‑1 (MQ=255) ccATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCC‑GGGGGCGGTATGAGAAACAAGc < 1:17424/100‑1 (MQ=255) cATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCC‑GGGGGCGGTATGAGAAACAAGCt < 2:1672523/100‑1 (MQ=255) cATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCC‑GGGGGCGGTATGAGAAACAAGCt < 2:1676575/100‑1 (MQ=255) tGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCC‑GGGGGCGGTATGAGAAACAAGCTaa < 1:2963047/100‑1 (MQ=255) tGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCC‑GGGGGCGGTATGAGAAACAAGCTAAAGga < 1:613566/100‑1 (MQ=255) aaCGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCC‑GGGGGCGGTATGAGAAACAAGCTAAAGGAGaa > 1:2130108/1‑100 (MQ=255) aCGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCC‑GGGGGCGGTATGAGAAACAAGCTAAAGGAGAAt < 1:1030381/100‑1 (MQ=255) aaGATCCAGAGTGCGAAAATAGGATCAACAGAAATAAAAGCCCCCGGAATGCTGCAACATGTC‑GGGGGCGGTATGAGTAACAAGCTAAAGGAGAAGTtct < 2:1334453/100‑1 (MQ=255) gATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCC‑GGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCa > 2:2037659/1‑100 (MQ=255) aTCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCC‑GGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCAt < 2:1767470/100‑1 (MQ=255) gagTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCC‑GGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTg < 1:1974944/100‑1 (MQ=255) agTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCC‑GGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGa < 1:1043454/100‑1 (MQ=255) gTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCC‑GGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGat < 2:353117/100‑1 (MQ=255) ttCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCC‑GGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGata > 2:3055871/1‑100 (MQ=255) tCGAAAATAGTATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCC‑GGGGGCGGTATGAGATACGAGCTAAAGGAGAATTTCTCATGTCTGatat < 2:2000896/100‑1 (MQ=255) cGAGAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCC‑GGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGata < 2:2576818/98‑1 (MQ=255) gAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCC‑GGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGc < 1:2073329/100‑1 (MQ=255) aaaaTAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCC‑GGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCt < 1:1288760/100‑1 (MQ=255) aTAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCC‑GGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGc < 1:1588043/100‑1 (MQ=255) ggATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCC‑GGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGt > 1:1389421/1‑100 (MQ=255) cAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCC‑GGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGTAGaa < 1:728502/100‑1 (MQ=255) cAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCC‑GGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGTAGaa < 2:799325/100‑1 (MQ=255) cAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCC‑GGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGTAGaa > 1:2097124/1‑100 (MQ=255) aaCACAAATAAAAGCCCCCGGAATGCTGCAACATGCC‑GGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGTAGAAc > 2:628180/1‑100 (MQ=255) aaCACAAATAAAAGCCCCCGGAATGCTGCAACATGCC‑GGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGTAGAAc > 2:1714692/1‑100 (MQ=255) aaCACAAATAAAAGCCCCCGGAATGCTGCAACATGCC‑GGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGTAGAAc > 1:1331704/1‑100 (MQ=255) aaCACAAATAAAAGCCCCCGGAATGCTGCAACATGCC‑GGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGTAGAAc > 1:3052624/1‑100 (MQ=255) acacAAATAAAAGCCCCCGGAATGCTGCAACATGCC‑GGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGTAGAACa < 1:1590696/100‑1 (MQ=255) ttctcataccgCCCCCGGCATGTTGCAGCATTCC‑GGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGTAGAACAAg > 1:72300/11‑100 (MQ=21) tctcataccgCCCCCGGCATGTTGCAGCATTCC‑GGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGTAGAACAAGa > 1:1746596/10‑100 (MQ=21) tctcataccgCCCCCGGCATGTTGCAGCATTCC‑GGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGTAGAACAAGa > 2:72809/10‑100 (MQ=21) tctcataccgCCCCCGGCATGTTGCAGCATTCC‑GGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGTAGAACAAGa > 1:2764127/10‑100 (MQ=21) aaaTAAAAG‑CCCCGGAATGCTGCAACATGCCGGGGGGCGGTATGAGAAACAAGCTAAAGGATAATTTCTCATGTCTGATATGCTAGCAGTAGAACAAGaa < 1:2151522/100‑1 (MQ=255) cataccgCCCCCGGCATGTTGCAGCATTCC‑GGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGTAGAAAAAGaaa > 2:859872/7‑99 (MQ=25) aTAAAAGCCCCCGGAATGCTGCAACATGCC‑GGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGTAGAACAAGaaac < 1:2820358/100‑1 (MQ=255) taccgCCCCCGGCATGTTGCAGCATTCC‑GGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGTAGAACAAGaaacaa > 1:2441091/5‑100 (MQ=37) aaaaGCCCCCGGAATGCTGCAACATGCC‑GGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGTAGAACAAGaaacaa < 1:2717056/100‑1 (MQ=255) ccgCCCCCGGCATGTTGCAGCATTCC‑GGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGTAGAACAAGaaacaaac > 2:2629307/3‑100 (MQ=38) ccgCCCCCGGCATGTTGCAGCATTCC‑GGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGTAGAACAAGaaacaaac > 2:2754615/3‑100 (MQ=37) cgCCCCCGGCATGTTGCAGCATTCC‑GGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGTAGAACAAGAaacaaaca > 1:2414832/2‑100 (MQ=38) aGCCCCCGGAATGCTGCAACATGCC‑GGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGTAGAACAAGAaacaaaca < 1:270799/100‑1 (MQ=255) aGCCCCCGGAATGCTGCAACATGCC‑GGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGTAGAACAAGAaacaaaca > 2:2218282/1‑100 (MQ=255) gCCCCCGGCATGTTGCAGCATTCC‑GGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGTAGAACAAGAAacaaacaa > 1:1189134/1‑100 (MQ=38) gCCCCCGGCATGTTGCAGCATTCC‑GGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGTAGAACAAGAAacaaacaa > 1:1085659/1‑100 (MQ=38) cccccGGCATGTTGCAGCATTCC‑GGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCAGGTCTGGTATGCTAGGAGTAGAACAAGAAACAAACAat > 2:2053283/1‑100 (MQ=37) ccccGGCATGTTGCAGCATTCC‑GGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGTAGAACAAGAAACAAACAatg > 2:1227634/1‑100 (MQ=38) ccccGGAATGCTGCAACATGCC‑GGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGTAGAACAAGAAACAAACAatg > 1:802399/1‑100 (MQ=255) cccGGCATGTTGCAGCATTCC‑GGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGTAGAACAAGAAACAAACAatga > 2:2844672/1‑100 (MQ=38) cccGGAATGCTGCAACATGCC‑GGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGTAGAACAAGAAACAAACAatga < 1:2453693/100‑1 (MQ=255) cccGGAATGCTGCAACATGCC‑GGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGTAGAACAAGAAACAAACAatga < 2:320215/100‑1 (MQ=255) cGGAATGCTGCAACATGCC‑GGGGGCGGTATGAGATACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGTAGAACAAGAAACAAACAatgatg < 2:1614269/100‑1 (MQ=255) ggAATGCTGCAACATGCC‑GGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGTAGAACAAGAAACAAACAATGATGt < 1:525657/100‑1 (MQ=255) ggAATGCTGCAACATGCC‑GGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGTAGAACAAGAAACAAACAATGATGt < 1:226291/100‑1 (MQ=255) aaTGCTGCAACATGCC‑GGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGTAGAACAAGAAACAAACAATGATGTTc < 1:2317147/100‑1 (MQ=255) | TGGAATAAATTATTCAATATCAAGAACTTAAATCCATGTTTGCAACGAAAGATCCAGAGTTCGAAAATAGGATCAACACAAATAAAAGCCCCCGGAATGCTGCAACATGCC‑GGGGGCGGTATGAGAAACAAGCTAAAGGAGAATTTCTCATGTCTGATATGCTAGCAGTAGAACAAGAAACAAACAATGATGTTCGTCA > NC_000913/2560222‑2560420 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |