Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 273,676 | 0 | T | G | 37.0% | 987.8 / 77.1 | 450 | pseudogene (830/1108 nt) | ykfC | CP4‑6 prophage; conserved protein;Phage or Prophage Related |
Reads supporting (aligned to +/- strand): ref base T (41/240); new base G (165/0); total (210/240) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 0.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 457 total aligned reads displayed.
TGTGGAAAACCATCAAGGCGGGACATATCGATGTCGGTCTCTTTCGGGCGGCCAGTGAAGGTGTGCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATACCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAACTGGCAGTGGAAACCCGCGGTGGCGTACTGCCGCTATGCCGATGATTTTGTCCTCATCGTCAAAGGCACCAAAGCAC‑AGGTGGAAGCCATCAGGGAGGAGTGTCGGGGTGTGCTCGAAGGCAGTCTGAAACTCAGGCTGAACATGGATAAGA‑CTAAAATCCCCCATGTTAATGACGGCTTTATCTTTCTGGGGCACAGGCTCATTCGCAAACGCAGTCGTTATGGCGAGATGCGAGTGGTCTCAACGATCCCGCAGGAGAAAGCCAGAAA > NC_000913/273433‑273925 | aTCAAGGCGGGACATATCGATGTCGGTCTCTTTCGGGCGGCCAGTGAAGGTGTGCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATACCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAACTGGCAGTGGAAACCCGCGGTGGCGTACTGCCGCTATGc < 1:5532591/251‑1 (MQ=255) cGGGACATATCGATGTCGGTCTCTTTCGGGCGGCCAGTTAAGGTGTGCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATACCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAACTGGCAGTGGAAACCCGCGGTGGCGTACTGCCGCTATGCCgatgat < 1:4774561/251‑1 (MQ=255) ggACATATCGATGTCGGTCTCTTTCGGGCGGCCAGTGAAGGTGTGCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATACCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGGGAAAAATAGGAGTGGGAAACCGCGGGGGCGGAGTGgcgc > 2:1493085/1‑237 (MQ=255) gcCAGTGAAGGTGTGCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATACCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGGGAAAAAAGGCAGGGGAAAACCGCGGGGGGGGACTGCCGCCATGc > 1:633150/1‑212 (MQ=255) cAGTGAAGGTGTGCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATACCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAACTGGCAGTGGAAACCCGCGGTGGCGTACTGCCGCTATGc < 2:2474170/210‑1 (MQ=255) cAGTGAAGGTGTGCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATACCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAACCTGCAGGGGAAACCCCCCGGTGCGGACCGCCGCCATGCCGATGATTTTTTCCTCATCGTCAAAGGCACCAAAGCAC‑Agg > 1:5889889/1‑251 (MQ=255) gtgtTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATACCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCCGAGAAAACCGGCAGTGGAAAACCGCGGGGGCGGACTGCCg > 1:986482/1‑181 (MQ=255) gtgtTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATACCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCCGAGAAAAATGGGAGAGGGAACCCCCGGGGGCGTACTGGCGCTATGCCGATGATTTTGTTCTCCTCCTCAAAGGGAACAAAGAAC‑AAGGGGGAGCCATCCGGgaggagatg > 1:137866/1‑248 (MQ=255) gtgtTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATACCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAACTGGCAGTGGAAACCCGCGGTGGCGTAc < 2:1093664/176‑1 (MQ=255) gtgtTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATACCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAACTGGCAGTGGAAACCCGCGGTGGCGTACTGCCGCTATGCCGATGATTTTGTcc < 1:1702739/201‑1 (MQ=255) gtgtTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATACCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAACTGGCAGTGGAAACCCGCGGTGGCGTACTGCCGCTATGCCGATGATTTTGTCCTCATCGTCAAAGGCACCAAAGCAC‑AGGTGGAAGCCATCAGGgaggag < 2:137817/248‑1 (MQ=255) gtgtTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATACCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAAATGGGAGTGGAAACCCGCGGGGGGGGACTGCCGCCATGCCGATGGTTTTTTCCTCCTCCTCAAAGGGACCAAAGCCCAAGGGGGAAGCCAtacggaggggggt > 1:1829896/1‑239 (MQ=255) gtgtTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATACCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAAATGGCAGTGGGAAACCGCGGGGGGGTAc > 2:5345607/1‑176 (MQ=255) atCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATACCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAACTGGCAGTGGAAACCCGCGGTGGCGTACTGCCGCTATGCCGATGATTTTGTCCTCATCGTCAAAGGCACCAAAGCAC‑AGGTGGAAGCCATCAGGGAGGAGTGTCGGGgtg < 1:144074/251‑1 (MQ=255) atCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATACCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAACTGGCAGTGGAAACCCGCGGTGGCGTACTGCCGCTATGCCGATGATTTTGTCCTCATCGTCAAAGGCACCAAAGCAC‑AGGTGGAAGCCATCAGGGAGGAGTGTCGGGgtg < 2:4510601/251‑1 (MQ=255) atCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATACCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAACTGGCAGTGGAAACCCGCGGTGGCGTACTGCCGCTATGCCGATGATTTTGTCCTCATCGTCAAAGGCACCAAAGCAC‑AGGTGGAAGCCATCAGGGAGGAGTGTCGGGgtg < 2:5844040/251‑1 (MQ=255) tCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATACCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAACTGGCAGTGGAAACCCGCGGTGGCGTACTGCCGCTATGCCGATGATTTTGTCCTCATc < 2:1272407/198‑1 (MQ=255) cgccgcTATTATCGAACATCATGCTGAATGAGTTCGATCAATACCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAACTGGCAGTGGAAACCCGCGGTGGCGTACTGCCGCTATGCCGATGATTTTGTCCTCATCGTCAAAGGCACCAAAGCAC‑AGGTGGAAGCCATCAGgga < 2:1715841/235‑1 (MQ=255) attatCGAACATCATGCTGAATGAGTTCGATCAATACCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAACTGGCAGTGGAAACCCGCGGTGGCGTACTGCCGCTATGCCGATGATTTTGTCCTCATCGTCAAAGGCACCAAAGCAC‑AGGTGGAAGc < 2:159517/219‑1 (MQ=255) attatCGAACATCATGCTGAATGAGTTCGATCAATACCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAACATGCAGTGGAAAACCGCGGCGGCGTACTGCCGCTCTGCCGATGATTTTGTCCTCATCGTCAAAAGCACCAAAGCAC‑AAGGGGGAGc > 1:159566/1‑219 (MQ=255) attatCGAACATCATGCTGAATGAGTTCGATCAATACCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGGCAGAGAAAAAAGGCAGGGGAAACCCGCGGGGGCGGACTGCCGCTATGCCGATGATTTTGTCCTCATCGTCAAAGGCACCAAAGCAC‑AGGGGGGAGGCATCAGGGGGGGGGGGCgggggggggtccgag > 2:3281588/1‑240 (MQ=255) aaCATCATGCTGTATGAGTTCGATCAATACCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAACTGGCAGTGGAAACCCGCGGTGGCGTACTGCCGCTATGCCGATGATTTTGTCCTCATCGTCAAAGGCACCAAAGCAC‑AGGTGGAAGCCATCAGGGAGGAGTGTCGGGGTGTGCTCGAAGGCAGTc < 2:5942576/250‑1 (MQ=255) aCATCATGTGGAATGAGTTCGATCAATACCTGCATGAGCGCTCCCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAACTGGCAGTGGAAACCCGCGGTGGCGTACTGCCGCTATGCCGATGATTTTGTCCTCATCGTCAAAGGCACCAAAGCAC‑AGGTGGAAGCCATCAGGGAGGAGTGTCGGGGTGTGCTCGAAGGc < 1:2776824/245‑1 (MQ=255) aCATCATGCTGAATGAGTTCGATCAATACCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAAATGGCAGTGGGAACCCGCGGGGGCGGACTGCCGCTATGCCGATGATTTTTTCCTCATCGTCAAAGGCACCACAGCAC‑CGGTGGAAGCCATCAAGGGGGAGGGGCgggggg > 2:3755816/1‑232 (MQ=255) aCATCATGCTGAATGAGTTCGATCAATACCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAAAAGGCAGTGGAAAACCGCGGGGGCGTCCTGCCGCCATGCCGATGATTTTGTCCTCATCGTCAAAgg > 2:3627297/1‑190 (MQ=255) atcatGCTGAATGAGTTCGATCAATACCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAACTGGCAGGGGGAAACCGCGGGGGGGGACTGCCGCCATGCCgaag > 1:3925064/1‑164 (MQ=255) tGCTGAATGAGTTCGATCAATACCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAACTGGCAGTGGAAACCCGCGGTGGCGTACTGCCGCTATGCCGATGATTTTGTCCTCATCGTCAAAGGCACCAAAGCAC‑AGGTGGAAGCCATCAGGGAGGAGTGTCgggg < 2:1190390/226‑1 (MQ=255) tGCTGAATGAGTTCGATCAATACCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAACTGGCAGTGGAAACCCGCGGTGGCGTACTGCCGCTATGCCGATGATTTTGTCCTCATCGTCAAAGGCACCAAAGCAC‑AGGTGGAAGCCATCAGGGAGGAGTGTCGGGGTGTGCTCGAAGGCAGTCTGAAACTc < 1:3774137/251‑1 (MQ=255) tGCTGAATGAGTTCGATCAATACCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAACCGGCAGTGGAAAACCGCGGGGGCGGACCGCCGCCATGCCGATGATTTTGTCCTCATCGTCAAAAGCACCCAAGCCC‑AGGGGGAAGCCATCACGGAGGAGGGGCGGGGTGTGCTCGAAGGCAGGCTGAAAcc > 1:4104727/1‑249 (MQ=255) gAATGAGTTCGATCAATACCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAACTGGCAGTGGAAACCCGCGGTGGCGTACTGCCGCTATGCCgatgat < 1:2156039/160‑1 (MQ=255) gAATGAGTTCGATCAATACCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAAATGGGAGTGGAAAACCGCGGGGGGGGACTGCCGCTATGCCGATGATTTTGTCCTCATCGCCAAAGGc > 1:3075110/1‑181 (MQ=255) gATCAATACCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAACTGGGAGTGGGAACCCGCGGGGGCGTACTGCCGCCCTGCCGATGGTTTTGTTCTCATCGGCAAAGGCAccca > 1:2431090/1‑174 (MQ=255) aTCAATACCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCCGAGAAAACTGGCAGTGGAAACCCGCGGGGGCGTACTGCCGCCCTTCCGCTGATTTTTTCCTCCTCGTCCAAAGCACCACAACAC‑CAGTGGGAGc > 2:1888849/1‑190 (MQ=255) aTCAATACCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAAACGGCAGTGGGAACCCCCCGTGGCGGACCGCCCCTATGCCCGTGAGTTTTTCCCCATCCTCCAAAGCACCAAAGCAC‑AGGGGGGAACCATCAGGGGGGGGGGGCgggggg > 1:1053355/1‑211 (MQ=255) aTACCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAACTGGCAGTGGAAACCCGCGGTGGCGTACTGCCGCTATGCCGATGATTTTGTCCTCATCGTCAAAg < 2:2318353/164‑1 (MQ=255) cTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAACTGGCAGTGGAAACCCGCGGTGGCGTACTGCCGCTa < 2:4923300/131‑1 (MQ=255) cTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAAACTGCAGTGGAAACCCGCCGTGGCGTACCGCCCCTATGCCGATGATTTTTTCCTCATCGTCAAAGGCACCAAAGCAC‑AGGTGGAAACCATCAgggggg > 1:3462028/1‑193 (MQ=255) gCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAACTGGCAGTGGAAAACCGCGGGGGCGGACTGCCg > 1:2298767/1‑126 (MQ=255) cATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAACTGGCAGTGGAAACCCGCGGTGGCGTACTGCCGCTATGCCGATGATTTTGTCCTCATCGTCAAAGGCACCAAAGCAC‑AGGTGGAAGCCATCAGGGAGGAGTGTCGGGGTGTGCTCGAAGGCAGTCTGAAACTCAGGCTGAACATGGATAAGA‑CTAAAAt < 2:5570706/251‑1 (MQ=255) gAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAACTGGCAGTGGAAACCCGCGGGGGCGGACTGc > 2:611261/1‑120 (MQ=255) gcgcTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAACTGGCAGTGGAAACCCCCGGGGGCGTACTGCCGCTATGCCGATGATTTTTTTCTCATCGTCAAAGGCACCCAAGCAC‑AAGGGGAAGCCATCAGGGGGGAGGGTCGGGGGGTGCGCGAAGGCAGTCTGAAACTCAGGCTGAACATGGATAAAA‑CTaaaaaaccc > 1:2553880/1‑245 (MQ=255) aCCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAACTGGCAGTGGAAACCCGCGGTGGCGTAc < 2:668131/110‑1 (MQ=255) aCCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAACTGGCAGTGGAAACCCGCGGTGGCGTACTGCCGCTATGCCGATGATTTTGTCCTCATc < 1:4416745/140‑1 (MQ=255) aGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAACTGGCAGTGGAAACCCGCGGTGGCGTACTGCCGCTa < 1:1981282/105‑1 (MQ=255) aGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAACTGGCAGTGGAAACCCGCGGTGGCGTACTGCCGCTATGCCGATGATTTTGTCCTCATCGTCAAAGGCACCAAAGCAC‑AGGTGGAAGCCATCAGggagg < 2:1427261/167‑1 (MQ=255) aGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAACTGGCAGTGGAAACCCGCGGTGGCGTACTGCCGCTATGCCGATGATTTTGTCCTCATCGTCAAAGGCACCAAAGCAC‑AGGTGGAAGCCATCAGgga < 2:4811892/165‑1 (MQ=255) aGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAACTGGCAGTGGAAACCCGCGGTGGCGTACTGCCGCTATGCCGATGATTTTGTCCTCATCGTCAAAGGCACCAAAGCAC‑AGGTGGAAGCCATCAGGGAGGAGTGTCGGGGTGTGCTCGaa < 2:2956044/187‑1 (MQ=255) aGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAAATGGCAGGGGAAAACCGCGGGGGGGGACTGCCGcca > 2:1980946/1‑103 (MQ=255) gAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGGAAACCTGCCGGGGAAAACCCCGGTGGCGTACTGCCCCTATGCCGATGATTTTGGCCTCCTCCGCAAAGGGACCCAACCAC‑CGGGGGAAGCCCTCAGGGGGGAGGGTCGGGGGGTGGTCGGAGGGAGGCTGAAACACCGGCCGAACATGGGTAAGACCAAAAATccccccggtaaagaacggattat > 1:5245519/1‑229 (MQ=255) aaaGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAAATGGCAGTGGGAACCCGCGGGGGCGTACTGCCGCCATGCCGGTGATTTTTTCCTCCTCGGCAAAAGCACCAAAACAC‑AGGGGGGAGGCATCAGGGAGGGGGGTCGGGGGGGGCTCCAAAGGAGGCTGAAACACAGGGTGGAAAAGGGTAAAA‑ATAAAAAACCCCATGTTAATGAAggggttttattt > 2:926626/1‑239 (MQ=255) gtggtACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAACTGGCAGTGGAAACCCGCGGTGGCGTACTGCCGCTATGc < 2:5755556/93‑1 (MQ=255) gtggtACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAACTGGCAGTGGAAACCCGCGGTGGCGTACTGCCGCTATGCCGATGATTTTGTCCTCATCGTCAAAGGCACCAAAGCAC‑AGGTGGAAGc < 2:4595453/141‑1 (MQ=255) gtggtACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAACTGGCAGTGGAAACCCGCGGTGGCGTACTGCCGCTATGCCGATGATTTTGTCCTCATCGTCAAAGGCACCAAAGCAC‑AGGTGGAAGCCATCAGGGAGGAgtgt < 1:1503810/157‑1 (MQ=255) gtggtACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAACTGGCAGGGGGAACCCGCGGGGGCGTACTGCCGCCATGCCGGTGATTTTGTCCTCATCGTCaa > 2:2033596/1‑117 (MQ=255) gtggtACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAAATGGCAGTGGAAAACCGCGGGGGCGTACTGCCCCCATGCCGATGATTTTTTCCTCATCGTCCAAAGCACCCAAACCC‑AGGGGGGAGc > 1:4596251/1‑141 (MQ=255) gtggtACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAAATGGCAGGGGAAAACCGCGGGGGCGGACTGCCGCTATGCCGATGATTTTGTCCTCCTCGGCAAAGGCACCAAAGAAC‑AAGGGGaa > 1:5641409/1‑139 (MQ=255) gtggtACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGCCAGAGGAAAATGGCAGTGGGAAACCGCCGGGGGGTGATGCCGCTATGc > 1:5756499/1‑93 (MQ=255) ggAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAACTGGCAGTGGAAACCCGCGGTGGCGTAc < 2:3896200/74‑1 (MQ=255) ggAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAACTGGCAGTGGAAACCCGCGGTGGCGTACTGCCGCTATGCCGATGATTTTGTCCTCATCGTc < 1:1237213/107‑1 (MQ=255) ggAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAACTGGCAGTGGAAACCCGCGGTGGCGTACTGCCGCTATGCCGATGATTTTGTCCTCATCGTCAAAGGCACCAAAGCAC‑AGGTGGAAg < 1:312480/132‑1 (MQ=255) ggAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAACTGGCAGTGGAAACCCGCGGTGGCGTACTGCCGCTATGCCGATGATTTTGTCCTCATCGTCAAAGGCACCAAAGCAC‑AGGTGGAAGCCATCAGGgaggag < 1:2908396/146‑1 (MQ=255) gAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAACTGGCAGTGGAAACCCGCGGTGGCGTACTTCCGCTTTGCCGATGATTTTTTTCTCCTCGTCCAAGGCACCCAAGCAC‑AGGTGGGAGCCCTCAGGGGGGAGGGTCCGGGTGTGCTCGCAGGCAGTCTGAAACTCAGGCTGGACATGGataaaa‑ataaaaa > 1:4295994/1‑203 (MQ=255) gAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAACTGGCAGTGGAAACCCGCGGTGGCGTACTGCCGCTATGCCGATGATTTTGTCCTCATCGTCAAAGGc < 1:3650254/112‑1 (MQ=255) gAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAACTGGCAGTGGAAACCCGCGGTGGCGTACTGCCGCTATGCCGATGATTTTGTCCTCATCGTCAAAGGCACCAAAGcac < 1:5977591/122‑1 (MQ=255) gAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAACTGGCAGTGGAAACCCGCGGTGGCGTACTGCCGCTATGCCGATGATTTTGTCCTCATCGTCAAAGGCACCAAAGCAC‑AGGTGGAAGCCATCAggg < 1:2026684/140‑1 (MQ=255) gAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAACTGGCAGTGGAAACCCGCGGTGGCGTACTGCCGCTATGCCGATGATTTTGTCCTCATCGTCAAAGGCACCAAAGCAC‑AGGTGGAAGCCATCAGggagg < 1:5021774/143‑1 (MQ=255) gAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAACTGGCAGTGGAAACCCGCGGTGGCGTACTGCCGCTATGCCGATGATTTTGTCCTCATCGTCAAAGGCACCAAAGCAC‑AGGTGGAAGCCATCAGggagg < 2:3109787/143‑1 (MQ=255) gAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAACTGGCAGTGGAAACCCGCGGTGGCGTACTGCCGCTATGCCGATGATTTTGTCCTCATCGTCAAAGGCACCAAAGCAC‑AGGTGGAAGCCATCAGggagg < 2:2382982/143‑1 (MQ=255) gAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAACTGGCAGTGGAAACCCGCGGTGGCGTACTGCCGCTATGCCGATGATTTTGTCCTCATCGTCAAAGGCACCAAAGCAC‑AGGTGGAAGCCATCAGGgaggag < 1:796791/145‑1 (MQ=255) gAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAACTGGCAGTGGAAACCCGCGGTGGCGTACTGCCGCTATGCCGATGATTTTGTCCTCATCGTCAAAGGCACCAAAGCAC‑AGGTGGAAGCCATCAGGGAGGAgtg < 1:5150569/147‑1 (MQ=255) gAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAACTGGCAGTGGAAACCCGCGGTGGCGTACTGCCGCTATGCCGATGATTTTGTCCTCATCGTCAAAGGCACCAAAGCAC‑AGGTGGAAGCCATCAGGGAGGAGTGTCGGGGTGTGCt < 1:1154296/159‑1 (MQ=255) gAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAACTGGCAGTGGAAACCCGCGGTGGCGTACTGCCGCTATGCCGATGATTTTGTCCTCATCGTCAAAGGCACCAAAGCAC‑AGGTGGAAGCCATCAGGGAGGAGTGTCGGGGTGTGCTCGAAGGCAGTCTGAAACTCAGGCTGAACATGGATAAGA‑CTAAAAt < 2:4295260/204‑1 (MQ=255) gAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAACTGGCAGTGGAAACCCGCGGGGGCGGACTGCCGCTATTCCGATGATTTTTTCCTCATCGTCAAAAGCACCAAAACAC‑AGGGGGGAGCCATCAGGggggaggg > 2:5149696/1‑145 (MQ=255) gAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAACTGGCAGTGGAAACCCGCGGGGGCGGACTGCCGCTATGCCGATGATTTTTTCCTCATCGTCAAAGGCACCAAAACAC‑AGGTGGAAGCCATCAgggggg > 2:5020912/1‑143 (MQ=255) gAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAAATGGCAGTGGAAACCCGCGGGGGGGTACTGCCGCTATGCCGATGATTTTTTCCTCATCGTCAAAGGCACCAAAGCAC‑AGGGGGGAGCCATCAGGGGGGGGTGTCgggg > 2:3470062/1‑153 (MQ=255) aaTAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAACTGGCAGTGGAAACCCGCGGTGGCGTACTGCCGCTATGCCGATGATTTTGTCCTCATCGTCAAAGGCACCAAAGCAC‑AGGTGGAAGCCATCAGGGAGGAGTGTCGGGGTGTGCTCGAAGGCAGTCTGAAACTCAGGCTGAACATGGATAAGA‑CTAAAATCCCCCATGTTAATGACGGCTTTATCTTTCTGGGGCACAGGCTCATTc < 2:5254376/250‑1 (MQ=255) aCAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAACTGGCAGTGGAAACCCGCGGTGGCGTACTGCCGCTATGCCGATGATTTTGTCCTCATCGTCAAAGGCACCAAAGCAC‑AGGTgg > 1:1005363/1‑123 (MQ=255) aCAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAACTGGCAGTGGAAAACCGCGGGGGGGGACTGCCGCTATGCCGATGATTTTGTCCTCATCGTCCAAGGCACCAAAGAAC‑AGGGGGGAGACATCAGGGAGGGGTGTCGGGGGGTGCGCGAAGGCAGGCTGAAAATCAAGCTGaaaa > 1:4519030/1‑181 (MQ=255) aCAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAAATGGCAGGGGAAAACCGCGGGGGCGTAc > 1:899575/1‑68 (MQ=255) aCAGTATCCAACGGGGCCGAAGTACGGCGGGCAGAGAAAACTGGCAGTGGAAAACCGCGGGGGGGGACTGCCGCTATGCCGATGATTTTGTCCTCATCGTCAAAAGCACCCAAGCAC‑AGGTGGGAGCCATCAGGGAGGGGGGTCGGGGGGTGGTCGAAGGCCGTCTGGAAATCACGCCGAACCAGGGTAAGA‑TTAAAATCCCCCATGTTAATGAAGGCTTTTTTTTTCTTGGGGCCACGCTCATTTGCcaa > 2:1650594/1‑251 (MQ=255) gTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAACTGGCAGTGGAAACCCGCGGTGGCGTACTGCCGCTATGCCGATGATTTTGTCCTCATCGTCAAAGGCACCAAAGc < 2:3134521/112‑1 (MQ=255) gTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAACTGGCAGTGGAAACCCGCGGTGGCGTACTGCCGCTATGCCGATGATTTTGTCCTCATCGTCAAAGGCACCAAAGCAC‑AGGTGGAAGCCATCAGGGAGGAGTGTCgggg < 2:1008844/145‑1 (MQ=255) gTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAACTGGCAGTGGAAACCCGCGGTGGCGTACTGCCGCTATGCCGATGATTTTGTCCTCATCGTCAAAGGCACCAAAGCAC‑AGGTGGAAGCCATCAGGGAGGAGTGTCGGGGTGTGCTCGAAGGCAGTc < 2:4476149/162‑1 (MQ=255) gTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAACTGGCAGTGGAAACCCGCGGTGGCGTACTGCCGCTATGCCGATGATTTTGTCCTCATCGTCAAAGGCACCAAAGCAC‑AGGTGGAAGCCATCAGGGAGGAGTGTCGGGGTGTGCTCGAAGGCAGTCTGAAACTCAGGCTGAACATGGa < 2:822168/184‑1 (MQ=255) gTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAAATGGCAGTGGAAAACCGCGGGGGGGGACTGCCGCTATGCCGATGATTTTTTCCTCATCGTCAAAGGGACCAAAGCAC‑AGGGGGGAGCCAACAgggggg > 1:4820562/1‑135 (MQ=255) tATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAGCTGGCAGTGGAAACCCGCGGTGGCGTACTGCCGCTATGCCGATGATTTTGTCCTCATCGTCAAAGGCACCAAAGCAC‑AGGTGGAAGCCATCAGGGAGGAGTGTCGGGGTGTGCTCGAAGGCAGTCTGAAACTCAGGCTGAACATGGATAAGA‑CTAAAATCCCCCATGTTAATGACGGCTTTATCTTTCTGGGGCACAGGCTCATTCGCAAACGc < 1:1409840/250‑1 (MQ=255) aTCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAACTGGCAGTGGAAACCCGCGGTGGCGTACTGCCGCTATGCCGATGATTTTGTCCTCATCGTCAAAGGCACCAAAGCAC‑AGGTGGAAGCCATCAGGGAGGAGTGTCGGGGTGTGCTCGAAGGCAGTCTGAAACTCAGGCTGAACATGGATAAGA‑CTAAAATCCCCCATGTTAATGACGGCTTTATCTTTCTGGGGCACAGGCTCATTc < 2:2605932/241‑1 (MQ=255) aTCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAAATGGGAGGGGGAACCCGCGGTGGGGGACCTCCCCTATGTCGATGATTTTTTCCTCATCGTCAAAGGCACCAAAACAC‑AGGGGGGAGCCAACAGggagg > 1:3281036/1‑133 (MQ=255) gggCCGAAGTACGGCGGTCAGAGAAAACTGGCAGTGGAAACCCGCGGTGGCGTACTGCCGCTATGCCGATGATTTTGTCCTCATCGTCAAAGGCACCAAAGCAC‑AGGTGGAAGCCATCAGGGAGGAGTGTCGGGGTGTGCTCGAAGGCAGTCTGAAACTCAGGCTGAACATGGATAAGA‑CTAAAATCCCCCATGTTAATg < 1:4934160/200‑1 (MQ=255) gggCCGAAGTACGGCGGTCAGAGAAAACTGGCAGTGGAAACCCGCGGTGGCGTACTGCCGCTATGCCGATGATTTTGTCCTCATCGTCAAAGGCACCAAAGCAC‑AGGTGGAAGCCATCAGGGAGGAGTGTCGGGGTGTGCTCGAAGGCAGTCTGAAACTCAGGCTGAACATGGATAAGA‑CTAAAATCCCCCATGTTAATGACGGCTTTATCTTTCTgggg < 2:3984563/220‑1 (MQ=255) gggCCGAAGTACGGCGGTCAGAGAAAACCGGCAGGGGAAACCCCCGGGGGGGGACTGCCGCCATGCCGATGATTTTTTCCTCATCGTCCAAAGCACCCAAACCC‑AGGGGGAAGCCATCAGGGAGGGGGGTCGGGGGGTGGTCGAAAGGAGTCTGGAACCCCGGCTGGACATGGATAAGA‑CTAAAAACCCCCATGGTAATGACGGGCTTTTTTTTTTGGGGGCCAGGGTCAGTCGCAAAAGCAGTCGTTATg > 2:2764136/1‑251 (MQ=255) gAAGTACGGCGGTCAGAGAAAACTGGCAGTGGAAACCCGCGGTGGCGTACTGCCGCTATGCCGATGATTTTGTCCTCATCGTCAAAGGCACCAAAGCAC‑AGGTGGAAGCCATCAGGGAGGAGTGTCGGGGTGTGCTCGAAGGCAGTCTGAAACTCAGGCTGAACATGGa < 2:4126659/169‑1 (MQ=255) gTACGGCGGTCAGAGAAAACTGGCAGTGGAAACCCGCGGTGGCGTACTGCCGCTATGCGGATGATTTTGTCCTCATCGTCAAAGGCACCAAAGCAC‑AGGTGGAAGCCATCAGGGAGGAGTGTCGGGGTGTGCTCGAAGGc < 1:2364408/140‑1 (MQ=255) ggTCAGAGAAAACTGGCAGTGGAAACCCGCGGTGGCGTACTGCCGCTATGCCGATGATTTTGTCCTCATCGTCAAAGGCACCAAAGCAC‑AGGTGGAAGCCATCAGGGAGGAGTGTCGGGGTGTGCTCGAAGGCAGTCTGAAACTCAGGCTGAACATGGATAAGA‑CTAAAATCCCCCATGTTAATGACGGCTTTATCTTTCTGGGGCACAGGCTCATTCGCAAACGCAGCCGTTATGGCGAGATGCGAGTgg > 1:5333381/1‑251 (MQ=255) gaAAACTGGCAGTGGAAACCCGCGGTGGCGTACTGCCGCTATGCCGATGATTTTGTCCTCATCGTCAAAGGCACCAAAGCAC‑AGGTGGAAGCCATCAGGGAGGAGTGTCGGGGTGTGCTCGAAGGCAGTCTGAAACTCAGGCTGAACATGGATAAGA‑CTAAAATCCCCCATGTTAATGACGGCTTTATCTTTCTGGGGCACAGGCTCATTCGCAAACGCAGTCGTTATGGCGAGATGCGAGTGGGCTCaa > 1:320734/1‑250 (MQ=255) gTGGAAACCCGCGGTGGCGTACTGCCGCTATGCCGATGATTTTGTCCTCATCGTCAAAGGCACCAAAGCAC‑AGGTGGAAGc < 1:3998942/81‑1 (MQ=255) gTGGAAACCCGCGGTGGCGTACTGCCGCTATGCCGATGATTTTGTCCTCATCGTCAAAGGCACCAAAGCAC‑AGGTGGAAGCCATCAGGGAGGAGTGTCGGGGTGTGCTCGAAGGCAGTCTGAAACTCAGGCTGAACATGGATAAGA‑CTAAAATCCCCCATGTTAATGACGGCTTTATCTTTCTGGGGCACAGGCTCATTCGCAAACGCAGTCGTTATGGCGAGATGCGAGTGGTCTCAACGATCCCGCAgg > 1:3544689/1‑251 (MQ=255) gTGGAAACCCGCGGTGGCGTACTGCCGCTATGCCGATGATTTTGTCCTCATCGTCAAAGGCACCAAAGCAC‑AGGTGGAAGCCATCAGGGAGGAGTGTCGGGGTGTGCTCGAAGGCAGTCTGAAACTCAGGCTGAACATGGATAAGA‑CTAAAATCCCCCATGTTAATGACGGCTTTATCTTTCTGGGGCACAGGCTCATTCGCAAAAGCAGTCGTTATGGCGAGAGGTGAGTGGGCTCAACGATCCCGCCgg > 2:3389504/1‑251 (MQ=255) gTGGCGTACTGCCGCTATGCCGATGATTTTGTCCTCATCGTCAAAGGCACCAAAGCAC‑AGGTGGAAGCCATCAGGGAGGAGTGTCGGGGTGTGCTCGAAGGCAGTCTGAAAc < 1:333729/112‑1 (MQ=255) gTGGCGTACTGCCGCTATGCCGATGATTTTGTCCTCATCGTCAAAGGCACCAAAGCAC‑AGGTGGAAGCCATCAGGGAGGAGTGTCGGGGTGTGCTCGAAGGCAGTCTGAAACTCAGGCTGAACATGGATAAGA‑CTAAAATCCCCCATGTTAATGACGGCTTTATCTTTCTGGGGCACAGGCTCATTCGCAAACGCAGTCGTTATGGCGCGATGCGAGTGGTCTCAACGATCCCGCAGGGGAAAGCCAGaaa > 2:2130091/1‑251 (MQ=255) | TGTGGAAAACCATCAAGGCGGGACATATCGATGTCGGTCTCTTTCGGGCGGCCAGTGAAGGTGTGCCACAGGGCGGTGTTATATCGCCGCTATTATCGAACATCATGCTGAATGAGTTCGATCAATACCTGCATGAGCGCTACCTGAGCGGGAAAGCCAGAAAAGATCGGTGGTACTGGAATAACAGTATCCAACGGGGCCGAAGTACGGCGGTCAGAGAAAACTGGCAGTGGAAACCCGCGGTGGCGTACTGCCGCTATGCCGATGATTTTGTCCTCATCGTCAAAGGCACCAAAGCAC‑AGGTGGAAGCCATCAGGGAGGAGTGTCGGGGTGTGCTCGAAGGCAGTCTGAAACTCAGGCTGAACATGGATAAGA‑CTAAAATCCCCCATGTTAATGACGGCTTTATCTTTCTGGGGCACAGGCTCATTCGCAAACGCAGTCGTTATGGCGAGATGCGAGTGGTCTCAACGATCCCGCAGGAGAAAGCCAGAAA > NC_000913/273433‑273925 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |