Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 417,533 | 0 | T | G | 44.7% | 210.4 / 64.8 | 199 | V131G (GTG→GGG) | phoB | response regulator in two‑component regulatory system with PhoR |
Reads supporting (aligned to +/- strand): ref base T (67/42); new base G (88/0); total (157/42) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.97e-13 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 201 total aligned reads displayed.
TCTCCTCGACTGGATGTTACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGATATTCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGTGATTGAGATGCAGGGATTAAGTCTCGACCCGACATCTCACCGAGTGATGGCGGGCGAAGAGCCGCTGGAGAT‑GGGGCCG‑ACA‑GAATTTAAACTGCTGCACTTTTTTATGACGCATCCTGAGCGCGTGTACAGCCGCGAGCAGCTGTTAAACCACGTCTGGGGAACTAACGTGTAT‑GTGGAAGACCGCACGGTCGATGTCCACATTCGTCGCCTGCGTAAAGCACTGGAGCCCGGCGGGCATGACCGC > NC_000913/417291‑417780 | ggATGTTACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGATATTCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTCTTTCGCCAATGGCGGTGGACGAGGGGATTGAGAGGCAGGGATTa > 1:5244670/1‑251 (MQ=255) ggATGTTACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGATATTCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGGGGAAGAGGGGATTGAGATGCAg > 1:3696219/1‑245 (MQ=255) aTGTTACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGATATTCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGGGGGAGAGGGGGTTGGGATGCAgggg > 2:550406/1‑245 (MQ=255) ccGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGATATTCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGGAGAGGGGATTGAGATGCAGGGGTTAAGtc > 1:4207061/1‑237 (MQ=255) ccGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGATATTCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGGAGAGGGGATTGAGATGCAGGGATTAAGGCTCGCCCCGGCAtc > 1:3245961/1‑250 (MQ=255) gTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGATATTCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGGAGAGGGGGTTGAGATGCAGGGATTAAGTCTCGACCCGGCagatca > 2:1434237/1‑245 (MQ=255) aTCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGATATTCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGGAGAGGGGAATGGGATGGCGGGGTTAAGGCTCGACCCggact > 2:3843760/1‑240 (MQ=255) gTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGATATTCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGGGGTTGAGGTGCAGGGGTTAAg > 2:5224337/1‑225 (MQ=255) tcatcaAACACCTCAAGCGCGAGGCGATGACCCGGGATATTCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGt < 1:5632001/202‑1 (MQ=255) cacCTCAAGCGCGAGTCGATGACCCGGGATATTCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGGAGAGGGGGTTGGGGTGCAGGGGTTAAGGCTTGACCCGACATCTCACCGAGTGATgg > 2:4010427/1‑244 (MQ=255) cacCTCAAGCGCGAGTCGATGACCCGGGATATTCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGGGGAAGAGGGGATTGAGATGCAGGGATTAAGTCTCGACCCGACATCTCACCGGGTGATggcgggggg > 2:1547736/1‑248 (MQ=255) ccTCAAGCGCGAGTCGATGACCCGGGATATTCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGGAGAGGGGATTTGGATGCAGGGGTTAAGGCTCGACCCGACATCTCACCGAGGGGTTGCGGGCGGag > 2:5894554/1‑251 (MQ=255) ccTCAAGCGCGAGTCGATGACCCGGGATATTCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGGAGAGGGGATTGAGATGCAGGGATTAAg > 2:121458/1‑213 (MQ=255) ccTCAAGCGCGAGTCGATGACCCGGGATATTCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGGGATTGAGATGCAGGGATTAAGTCTCGACCCGACATCTCACCGGGTGATggcggggggag > 1:3443771/1‑246 (MQ=255) gACCCGGGATATTCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGGGATTGAGATGCAGGGGTTAAGTCTCGACCCGACATCTCACCGAGTGATGGCGGGGGAAGGGGCGCCGGGGGT‑ggggg > 2:4043714/1‑250 (MQ=255) gcccGGGATATGCCAGTGGTGATGTGGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATAGCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGTGATTGAGATGc < 1:5855769/183‑1 (MQ=255) cccGGGATATTCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGAGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGGGGAAGCGGGGATTgag > 1:1195963/1‑179 (MQ=255) ggATATTCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGGAGAGGGGATTGAGATGCAGGGATTAAGtc > 1:2147179/1‑191 (MQ=255) ttCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGGGATTGAGATGCAGGGATTAAGGCTCGACCCGACATCTCAACGAGTGATGGCGGGGGGAGAGGCGCCgggggagggggcggcacagttt > 1:720894/1‑231 (MQ=255) gtggtgATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGGGATTGAGATGCAGGGATTAAGtc > 2:3905354/1‑181 (MQ=255) gtggtgATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGGGATTGAGATGCAGGGAATAAGTCTCGACCCGAACTCACACCGGGtggtgg > 2:1683176/1‑208 (MQ=255) gtgATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGGGGAAGAGGGGATTGAGATGCAGGGGTTAAGGCTCGACCCGACATCTCAc > 1:3947446/1‑195 (MQ=255) aTGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGGGATTGAGATGCAGGGATTAAGTCTCGACCCGACATCTCACCGAGTGATGGGGGGGGGAGAGCGGCTGGGGAG‑GGGGGCG‑GCA‑Gaaaatttaa > 2:4583348/1‑237 (MQ=255) gTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGGAGAGGGGATTGGGATGCAGGGGTTAAGTCTCGACCCGACATCTCACCGGGTGATggcg > 2:1959072/1‑202 (MQ=255) gagGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTACGCCAATGGCGGTGGAAGAGGGGATTTAGATGCAGGGATTAAGTCTCGACCCGACATCTCACCGAGTGATGGCGGGCGa > 1:5742573/1‑196 (MQ=255) ggggAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGGGATTGAGATGCAGGGGTTAAGtc > 2:5851288/1‑160 (MQ=255) ggggAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGGGATTGAGATGCAGGGATTAAGtc > 2:2180098/1‑160 (MQ=255) gggAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGGAGAGGTGATTGAGATGCAGGGATTAAGTCTCGACCCGCCATCTCACCGAGTGATGGCGGGGGGAGAGGCGCCGGGGGTGGGGGCGG‑CCA‑GATTTTAAA‑TGGTGGACCTTTTTTTgtggcca > 2:1076553/1‑245 (MQ=255) ggAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGGGATTGAGATGCAGGGATTAAGt > 2:2703451/1‑157 (MQ=255) gaagaagaTCGCGTGCGCGGCCTTGACACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGTGATTGAGATGCAGGGATTAAGTCTCTACCCGACCTCTCACCCAGTGATggcg > 1:4527800/1‑183 (MQ=255) gaagaagaTCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGGAGAGGGGATTGAGATGCAGGGGTTAAGGCTCGACCCGACATCTCAc > 2:2515362/1‑171 (MQ=255) gaagaagaTCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGGGATTGAGATGCAg > 2:4030072/1‑144 (MQ=255) gaagaagaTCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGGGATTGAGATGCAGGGATTAAGTCTCGACCCGAc > 2:1891360/1‑164 (MQ=255) gaagaTCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGGGATTGAGATGCAGGGGTTAAGTCTCGACCCGACATCTCACCGAGGGATggcg > 2:2385548/1‑180 (MQ=255) gCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGGAGAGGTGATTGAGATGCAGGGATTAAGGCTCGACCCGACATCTCACCGAGTGATGGCGGGGGGAGAGGCCCCGGGGAT‑GGGGCCG‑ACA‑GAAATTTAAATGCTGCACTTTTTTTTGAAGCAGTCTGGGCGCGCGTACAGCCGCGag > 1:2695422/1‑251 (MQ=255) gCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGGAGAGGGGATTGAGATGCAGGGGTTAAGTCTCGACCCGACATCTCACCGAGTGATGGCGGGGGGAGAGGCGCTGGGGGT‑ggg > 2:5428377/1‑187 (MQ=255) gCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGTGATTGAGATGCAGGGATTAAGGCTCGACCCGACATCTCACCGAggg > 1:2906638/1‑156 (MQ=255) gCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGGGATTGAGATGCAGGGATTAAGTCTCGACCCGACATCCCACCGAGTGATGGCGGGCGGAAAGCCGCCGGGGAT‑GGGGGCG‑GCA‑GAATTTAAAACTCTGCAc > 1:193794/1‑212 (MQ=255) cTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGTGATTGAGATGCAGGGATTAAGTCTCGACCCGACATCTCACCGAGGGATGGCGGGCGGAAAGACGCTGGGGAA‑GGGGGCG‑CCA‑GAATTTAAAATGCTGCACTTTTTTTTGTCGCATccctgacgccggtgcagccgccggaa > 2:3528292/1‑227 (MQ=255) gcgcGGATGACTATATCTCCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGGGATTGAGATGCAGGGATTTAGTCTCGACCCGACATCTCACCGAGTGATGGCGGGGGAGGAGCCGCCGGGGAT‑GGGGGCGCGCG‑AAATTTAAAC‑CCTGCACTTTTTTTTGTGGCCTCCTCAGCGCGTGTGTAGCCCCGAGGCCCTGTTataa > 2:5778619/1‑248 (MQ=255) gATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGTGATTGAGAt < 1:825753/104‑1 (MQ=255) gATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGGGATTGAGAt > 2:825596/1‑104 (MQ=255) tGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGTGATTGAGATGCAGGGATTAAGTCTCGACCCGACATCTCAc > 2:5291276/1‑133 (MQ=255) tGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGTGATTGAGATGCAGGGATTAAGTCTCGACCCGACATCTCACCGAGTGATGGCGGGCGGAGAGCCGCTgggg > 2:5721420/1‑161 (MQ=255) tGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGGGATTGAGATGCAGGGATTAAGTCTCGACCCGACATCTCACCGAGTGATGGCGGGGGAAGAGCCGCTGGGGAT‑GGGGGCG‑GCA‑GAAATTAAAATGGTGCACTTTTTTATGACGCATCCTGAGGGCGTGTACAGGCGCGAGCAGGTGGTAAAACACGt > 1:4758919/1‑249 (MQ=255) tGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGGGATTGAGATGCAGGGATTAAGGCTCGACCCGACATCTCACCGAGTGATGGCGGGCGGAGAGCCGCTGGAGAT‑GGGGc > 1:1522754/1‑170 (MQ=255) gACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGGGATTGAGATGCAg > 2:1828486/1‑105 (MQ=255) cTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGTGATTGAGATGCAGGGATTAAGTCTCGACCCGACAtc > 2:5030526/1‑126 (MQ=255) cTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGTGATTGAGATGCAGGGATTAAGTCTCGACCCGACATCTCAc > 1:5323449/1‑130 (MQ=255) cTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGTGATTGAGATGCAGGGATTAAGTCTCGACCCGACATCTCACCGGGTGATGGCGGGGGGAGAGCCGCTGGGGAT‑GGGGGCG‑GCA‑GGATTTTAACTGCTGCACCTTTTTTTGTCGCCTCCTGAGGGCGGGGACAGCCGCGGGCCGCCGGTTAACCCCCTCTtgg > 1:147518/1‑251 (MQ=255) cTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGTGATTGAGATGCAGGGATTAAGTCTCGACCCGACATCTCACCGAGTGATggcg > 2:5770953/1‑142 (MQ=255) cTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGTGATTGAGATGCAGGGATTAAGTCTCGACCCGACATCTCACCGAGTGATGGCGGGGGGAGAGCCGCggggg > 2:4822689/1‑158 (MQ=255) cTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGTGATTGAGATGCAGGGATTAAGTCTCGACCCGACATCTCACCGAGTGATGGCGGGGGGAGAGCCGCCGGGGAT‑gggggc > 2:3354212/1‑166 (MQ=255) cTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGTGATTGAGATGCAGGGATTAAGTCTCGACCCGACATCTCACCGAGTGATGGCGGGCGGAGAGCCGCTGgggaa > 2:3107379/1‑161 (MQ=255) cTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGTGATTGAGATGCAGGGATTAAGTCTCGACCCGACATCTCAACGAGTGATGGCGGGCGAAGAGGCGCTGGAGAT‑GGGGCCG‑ACA‑GAAATTAAAATGCTGCAc > 1:1445889/1‑190 (MQ=255) cTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGTGATTGAGATGCAGGGATTAAGGCTCGACCCGACATCTCAc > 2:3971990/1‑130 (MQ=255) cTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGGGATTGAGATGCAGGGGTTTAGTCTCGACCCCACATCTCACCGAGTGATGGCGGGCGAAGAAGCGCTGGGGCT‑GGGGCCC‑Accg > 1:5849676/1‑171 (MQ=255) cTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGGGATTGAGATGCAGGGATTAAGTCTCGAcc > 2:2752818/1‑119 (MQ=255) cTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGGGATTGAGATGCAGGGATTAAGTCTCGACCCGACAtctc > 2:4365066/1‑128 (MQ=255) cTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGGGATTGAGATGCAGGGATTAAGTCTCGACCCGACATCTCACCGAGTGATGGCGGGGGGAGAGACGCCGGGGAG‑GGGGGCG‑GAA‑CGAATTAAAAAGCTGCACCTTTTTTTTACggcacccttgcgggtggta > 2:2235810/1‑202 (MQ=255) cTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGGGATTGAGATGCAGGGATTAAGTCTCGACCCGAAATCTCACCGAGGGATGGCGGGCGGAGAGGCGCTGGAGGA‑GGGGGCG‑ACA‑GAATTTAAACTGCTGGCCttttt > 1:1304107/1‑195 (MQ=255) cTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGGGGAAGAGGTGATTGAGATGCAGGGATTAAGtc > 1:890700/1‑113 (MQ=255) cTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGGGGAAGAGGTGATTGAGATGCAGGGATTAAGTCTCGACCCGACATCTCACCGAGTGATGGCGGGCGAAAAGCCGCTGGGGAT‑GGGGCCC‑GCAGGAATTTaaa > 1:2300647/1‑182 (MQ=255) cTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGGGGAAGAGGGGATTGAGATGCAGGGATTAAGTCTCGACCCGACATCTCACCGGGTGATGGCGGGGGGAGAGACGCCGGAGAT‑GGGGCCG‑ACA‑GGAATTAAAATGCTGCAACTTTTTATGGAGCCCACTGAAGGGGGGTAAAGCCGCGAGCAGCTTTTTAAccccaccttgg > 1:5546562/1‑242 (MQ=255) tCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGTGATTGAGATGCAGGGATTAAGTCTCGACCCGACATCTCACCGAGTGATGGCGGGCGAAGAGGCGCTGGGGAT‑GGGGCCG‑GCA‑GAATTTAAACTGCTGCACTTTTTTATGACGCATCCTGAGggcggggac > 1:653477/1‑210 (MQ=255) gTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGTGATTGAGATGCAGGGATTAAGTCTCGACCCGACATCTCACCGAGTGATGGCGGGCGGAGAGGCCCCGGGGGT‑GGGGGCG‑ACA‑GAATTTAAAATGGTGCACTTTTTTTTGACGCCTCCCGAGCGCGTGGACAGCCGCGGGCAGCTGGTAAAACACGGCTgggggaac > 1:2463456/1‑237 (MQ=255) aaTCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGTGATTGAGATGCAGGGATTAAGTCTCGACCCGACATCTCACCGAGTGATGGCGGGGGAAGAGCCGCCGGAGAT‑TGGGCCG‑CCA‑GAATTTAAAATGCTGGAc > 1:5079408/1‑148 (MQ=255) aaTCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGTGATTGAGATGCAGGGATTAAGTCTCGACCCGACATCTCACCGAGTGATGGCGGGCGGAGAGCCCCTGGGGAT‑GGGGCCG‑ACA‑GAATTTTAACTGCTGCCCCTTTTTTTTACGCATCCTTGGCGCGTGGACAGCCGCGGGCAGCTGTTAAACCCCCTCTGGGGGACCAACGGGTAT‑GTGGGAGAGCCCCCGGTCGATGGCccca > 1:5160239/1‑251 (MQ=255) aaTCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGTGATTGAGATGCAGGGATTAAGTCTCGACCCGACATCTCACCGAGTGATGGCGGGCGAAGAGCCGCTGGGGAT‑GGGGCCG‑ACA‑GAATTTTAACTGCTGCACTTTTTTTTGAAGCATCCTGAGCGCGGGTACAGCCGCGGGCAGCTGTTAAAACAAGTCTGGGGGACTAACGGGGAT‑GGGGGAGAACGGACGGGCGATGTCcaca > 1:3322482/1‑251 (MQ=255) aaGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGTGATTGAGATGCAGGGATTAAGTCTCGACCCGACATCTCAc > 2:1343003/1‑83 (MQ=255) aaGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGGGATTGAGATGCAGGGATTAAGTCTCGACCCGACATCTCACCGAGTGATGGCGGGGGAAGAGGCGCTGGGGGT‑GGGGGCG‑GAC‑GAATTTTAAATGCTGCAATTTTTTATGAAGCATCCTGAGCGCGGGGAAAGCCGCGGGCAGCTGGTAAAACACGGCTGGGGGAATAAAAGGGAT‑GGGGGAAACCGCACGGGCGAGTTCcaca > 1:1683129/1‑246 (MQ=255) gTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGTGATTGAGATGCAGGGATTAAGTCTCGACCCGACATCTCACCGAGTGATGGCGGGCGAAGAGGCGCTGGGGAT‑GGGGCCG‑CCA‑GAAATTAAACTGCTGCAACTTTTTTTGAAGCAACCTTAGCGCGTGTCCAGCCGCGGGCAGCTGTTAAACCCCCTCTGGGGGAATAAAGTGTATGGTGGAA‑ACCGCACGGTCGATGGCCACAATCAGCGcc > 1:2886061/1‑250 (MQ=255) gTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGGGATTGAGATGCAGGGATTAAGTCTCGACCCGACATCTCACCGAGTGATGGCGGGCGAGGAGCCGCTGGGGAT‑GGGGCCG‑ACC‑GAATTTAAACTGCTGCACTTTTTTATGAAGCATCCTg > 2:2412364/1‑157 (MQ=255) gTATTTCGCCAATGGCGGTGGAAGAGGGGATTGAGATGCAGGGATTAAGGCACGAACCGACATCTCACCGAGTGAAGGCGGGGGAAGAAGCCCGGGAGAT‑GGGGGCG‑ACA‑GAATTTAAAATGCTGCAc > 1:1990750/1‑128 (MQ=255) cGCCAATGGCGGTGGAAGAGGTGATTGAGATGCAg < 2:1479153/35‑1 (MQ=255) cGCCAATGGCGGTGGAAGAGGTGATTGAGATGCAg < 1:1254413/35‑1 (MQ=255) cGCCAATGGCGGTGGAAGAGGTGATTGAGATGCAg < 1:1828823/35‑1 (MQ=255) gCGGTGGAAGAGGTGATTGAGATGCAGGGATTAAg < 1:5225231/35‑1 (MQ=255) cGGTGGAAGGGGTGATTGAGATGCAGGGATTAAGTCGCGACCCGACATCTCACCGAGTGATGGCGGGCGAAGAGCCGCTGGAGAT‑GGGGCCG‑ACA‑GAATTTAAACTGCTGCACTTTTTTATGACGCATCCTGAGCGCGTGTACAGCCGCGAGCAGCTGTTAAACCACGTCTGGGGAACTAACGTGTAT‑GTGGAAGACCGCACGGTCGATGTCCACATTCGTCGCCTGCGTAAAGCACTGGAGCCcggcgg < 1:5492880/250‑1 (MQ=255) cGGTGGAAGAGGTGATTGAGATGCAGGGATTAAGTCTCGACCCGACATCTCACCGAGTGATGGCGGGCGAAGAGCCGCTGGAGAT‑GGGGCCG‑ACA‑GAATTTAAACTGCTGCACTTTTTTATGACGCATCCTGAGCGCGTGGACAGCCGCGGGCAGCTGTTAAACCACGTCTGGGGAACTAAAGGGGAt‑gt > 1:4059317/1‑190 (MQ=255) cGGTGGAAGAGGTGATTGAGATGCAGGGATTAAGTCTCGACCCGACATCCCACCGAGTGATGGCGGGCGAAGAGCCGCCGGAGAT‑ggg > 1:1750727/1‑88 (MQ=255) ggTGGAAGAGGTGGTTGAGATGCAGGGATTAAGtc < 2:3016684/35‑1 (MQ=255) ggTGGAAGAGGTGATTGAGATGCAGGGATTAAGtc < 1:191632/35‑1 (MQ=255) ggTGGAAGAGGTGATTGAGATGCAGGGATTAAGtc < 2:4466112/35‑1 (MQ=255) ggTGGAAGAGGTGATTGAGATGCAGGGATTAAGtc < 1:2189695/35‑1 (MQ=255) ggTGGAAGAGGTGATTGAGATGCAGGGATTAAGtc < 1:3906007/35‑1 (MQ=255) ggTGGAAGAGGTGATTGAGATGCAGGGATTAAGtc < 1:3038258/35‑1 (MQ=255) ggTGGAAGAGGTGATTAAGATGCAGGGATTAAGtc < 2:871185/35‑1 (MQ=255) gTGGAAGAGGTGATTGAGATGCAGGGATTAAGTCTCGACCCGACATCTCACCGAGTGATGGCGGGCGAAGAGCCGCTGGAGAT‑GGGGCCG‑ACA‑GAATTTAAACTGCTGCACTTTTTTATGACGCATCCTGAGCGCGTGTACAGCCGCGAGCAGCTGTTAAACCACGTCTGGGGAACTAACGTGTAT‑GTGGGAGACCGCACGGGCGATGTCCACATTCGTCGCCTGCGGAAAGCACTGGAGCCCGGCGGGCa > 1:1034213/1‑251 (MQ=255) ggAAGAGGTGATTGAGATGCAGGGATTAAGTCTCGACCCGACATCTCACCGAGTGATGGCGGGCGAAGAGCCGCTGGAGAT‑ggg > 1:3584934/1‑84 (MQ=255) gAAGAGGTGATTGAGATGCAGGGATTAAGTCTCGACCCGACATCTCACCGAGTGATGGCGGGCGAAGAGCCGCTGGAGAT‑GGGGCCG‑ACA‑GAATTTAAACTGCTGCACTTTTTTATGACGCATCCTGAGCGCGTGTACAGCCGCGAGCAGCTGTTAAACCACGTCTGGGGAACTAACGTGTAT‑GTGGAAGACCGCACGGTCGATGTCCACATTCGTCGcc > 2:5574253/1‑220 (MQ=255) agagGTGATTGAGATGCAGGGATTAAGTCTCGAcc < 1:1483229/35‑1 (MQ=255) agGTGATTGAGATGCAGGGATTAAGTCTCGACCCGACATCTCACCGAGTGATGGCGGGCGAAGAGGCGCTGGAGAt > 1:2114739/1‑76 (MQ=255) agGTGATTGAGATGCAGGGATTAAGTCTCGACCCGACATCTCACCGAGTGATGGCGGGCGAAGAGCCGCTGGAGAT‑GGGGCCG‑ACA‑GAATTTAAACTGCTGCACTTTTTTATGACGCATCCTGAGCGCGTGTACAGCCGCGAGCAGCTGTTAAACCACGTCTGGGGAACTAACGTGTAT‑GTGGAAGAc > 2:2137067/1‑188 (MQ=255) ggTGATTGAGATGCAGGGTTTAAGTCTCGACCCGACATCTCACCGAGTGATGGCGGGCGAAGAGCCGCTGGAGAT‑GGGGCCG‑ACA‑GAATTTAAACTGCTGCACTTTTTTATGACGCATCCTGAGCGCGTGTACAGCCGCGAGCAGCTGTTAAACCACGTCTGGGGAACTAACGTGTAt‑gt < 1:2746283/180‑1 (MQ=255) ggTGATTGAGATGCAGGGATTAAGTCTCGACCCGACATCTCACCGAGTGATGGCGGGCGGAGAGCCGCTGGAGAT‑GGGGCCG‑ACA‑GAATTTAAACTGCTGCACTTTTTTATGACGCATCCTGAGCGCGTGTACAGCCGCGAGCAGCTGTTAAAACACGTCTGGGGGACTAACGGGTAT‑GTGGAAGACCGCACGGTCGATGTCCACATTCGTCGCCTGCGTAAAGCACTGGAGCACGGCGGGCATGACCGc > 2:358437/1‑250 (MQ=255) ggTGATTGAGATGCAGGGATTAAGTCTCGACCCGACATCTCACCGAGTGATGGCGGGCGAAGAGCCGCTGGAGAT‑GGGGCCG‑ACA‑GAATTTAAACTGCTGCACTTTTTTATGACGCATCCTGAGCGCGTGTACAGCCGCGAGCAGCTGTTAAACCACGTCTGGGGAACTAACGTGTAt‑gt < 1:4260534/180‑1 (MQ=255) ggTGATTGAGATGCAGGGATTAAGTCTCGACCCGACATCTCACCGAGTGATGGCGGGCGAAGAGCCGCTGGAGAT‑GGGGCCG‑ACA‑GAATTTAAACTGCTGCACTTTTTTATGACGCATCCTGAGCGCGTGTACAGCCGCGAGCAGCTGTTAAACCACGTCTGGGGAACTAACGTGTAT‑GTGGAAGACCGCACGGTCGATGTCCACATTCGTCGCCTGCGTAAAGCACTGGAg > 1:867808/1‑232 (MQ=255) ggTGATTGAGATGCAGGGATTAAGTCTCGACCCGACATCTCACCGAGTGATGGCGGGCGAAGAGCCGCTGGAGAT‑GGGGCCG‑ACA‑GAATTTAAACTGCTGCACTTTTTTATGACGCATCCTGAGCGCGTGTACAGCCGCGAGCAGCTGTTAAACCACGTCTGGGGAACTAACGGGGAt‑gt > 2:4259800/1‑180 (MQ=255) gTGATTGAGATGCAGGGATTAAGTCTCGACCCGAc < 1:2406694/35‑1 (MQ=255) | TCTCCTCGACTGGATGTTACCTGGCGGCTCCGGTATCCAGTTCATCAAACACCTCAAGCGCGAGTCGATGACCCGGGATATTCCAGTGGTGATGTTGACCGCCAGAGGGGAAGAAGAAGATCGCGTGCGCGGCCTTGAAACCGGCGCGGATGACTATATCACCAAGCCGTTTTCGCCGAAGGAGCTGGTGGCGCGAATCAAAGCGGTAATGCGCCGTATTTCGCCAATGGCGGTGGAAGAGGTGATTGAGATGCAGGGATTAAGTCTCGACCCGACATCTCACCGAGTGATGGCGGGCGAAGAGCCGCTGGAGAT‑GGGGCCG‑ACA‑GAATTTAAACTGCTGCACTTTTTTATGACGCATCCTGAGCGCGTGTACAGCCGCGAGCAGCTGTTAAACCACGTCTGGGGAACTAACGTGTAT‑GTGGAAGACCGCACGGTCGATGTCCACATTCGTCGCCTGCGTAAAGCACTGGAGCCCGGCGGGCATGACCGC > NC_000913/417291‑417780 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 6 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |