mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.30.0 revision f53f5bf51c1f
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,293,439 | 0 | A | C | 30.8% | 145.6 / 100.5 | 160 | intergenic (+397/+247) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 4,293,438 | 0 | A | G | 26.9% | 188.9 / 75.7 | 160 | intergenic (+396/+248) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 3,872,769 | 0 | T | C | 21.6% | 307.8 / 54.7 | 160 | A28A (GCT→GCC) | yidX | putative lipoprotein |
| * | NC_000913 | 4,293,516 | 0 | T | C | 20.0% | 331.0 / 39.0 | 159 | intergenic (+474/+170) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 74 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1096185 = | 195 (0.780) | 59 (0.330) | 19/394 | 9.2 | 28.8% | intergenic (+132/+604) | ycdU/serX | putative inner membrane protein/tRNA‑Ser |
| ? | NC_000913 | = 1096727 | 153 (0.860) | intergenic (+674/+62) | ycdU/serX | putative inner membrane protein/tRNA‑Ser | |||||
| * | ? | NC_000913 | 4293080 = | NA (NA) | 50 (0.230) | 11/476 | 14.1 | NA | intergenic (+38/+606) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| ? | NC_000913 | = 4293644 | NA (NA) | noncoding (562/602 nt) | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | RIP321 (repetitive extragenic palindromic) element; contains 11 REP sequences and 4 IHF sites | |||||
| * | ? | NC_000913 | 3924666 = | 232 (0.920) | 11 (0.050) | 10/530 | 15.6 | 4.5% | coding (264/993 nt) | asnA | asparagine synthetase A |
| ? | NC_000913 | 3924705 = | 242 (1.010) | coding (303/993 nt) | asnA | asparagine synthetase A | |||||
| * | ? | NC_000913 | 2751470 = | 250 (0.990) | 9 (0.040) | 9/536 | 16.3 | 3.6% | coding (76/291 nt) | ratB | UPF0125 family protein |
| ? | NC_000913 | 2751493 = | 236 (0.970) | coding (53/291 nt) | ratB | UPF0125 family protein | |||||
| * | ? | NC_000913 | 2815444 = | 217 (0.860) | 4 (0.020) | 4/396 | 16.5 | 2.5% | intergenic (‑62/+1) | argZ/argY | tRNA‑Arg/tRNA‑Arg |
| ? | NC_000913 | = 2815718 | 162 (0.900) | intergenic (‑197/+2) | argY/argV | tRNA‑Arg/tRNA‑Arg | |||||
| * | ? | NC_000913 | 146280 = | 281 (1.120) | 10 (0.040) | 8/536 | 16.8 | 3.5% | coding (1200/1230 nt) | yadE | putative polysaccharide deacetylase lipoprotein |
| ? | NC_000913 | 146303 = | 273 (1.120) | coding (1223/1230 nt) | yadE | putative polysaccharide deacetylase lipoprotein | |||||
| * | ? | NC_000913 | = 2195021 | 249 (0.990) | 7 (0.030) | 7/532 | 17.3 | 2.8% | pseudogene (1301/2847 nt) | yehH | DUF4132 family pseudogene; defective yehI paralog; molybdate metabolism regulator, first fragment; molybdate metabolism regulator, second fragment 2; yehI' molR mutations have phenotypes and the N‑terminal molR fragment of yehI' may be expressed and may have retained or evolved MolR function |
| ? | NC_000913 | = 2195031 | 245 (1.010) | pseudogene (1311/2847 nt) | yehH | DUF4132 family pseudogene; defective yehI paralog; molybdate metabolism regulator, first fragment; molybdate metabolism regulator, second fragment 2; yehI' molR mutations have phenotypes and the N‑terminal molR fragment of yehI' may be expressed and may have retained or evolved MolR function | |||||
| * | ? | NC_000913 | 2301710 = | NA (NA) | 9 (0.040) +40 bp |
5/474 | 17.5 | 3.4% | noncoding (47/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913 | = 2302234 | 298 (1.190) | noncoding (571/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | |||||
| * | ? | NC_000913 | 683722 = | 284 (1.130) | 6 (0.020) | 6/536 | 18.0 | 2.1% | intergenic (‑86/+32) | rihA/gltL | ribonucleoside hydrolase 1/glutamate/aspartate ABC transporter ATPase |
| ? | NC_000913 | 683748 = | 297 (1.220) | intergenic (‑112/+6) | rihA/gltL | ribonucleoside hydrolase 1/glutamate/aspartate ABC transporter ATPase | |||||
| * | ? | NC_000913 | 3943209 = | 237 (0.940) | 7 (0.030) | 6/540 | 18.1 | 2.9% | noncoding (2258/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | NC_000913 | 4037050 = | NA (NA) | noncoding (2284/2905 nt) | rrlA | 23S ribosomal RNA of rrnA operon | |||||