New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	198033 =	49 (1.060)	3 (0.070)	3/400	7.8	5.8%	coding (106/2433 nt)	bamA	BamABCDE complex OM biogenesis outer membrane pore‑forming assembly factor
	?	NC_000913	198087 =	51 (1.160)					coding (160/2433 nt)	bamA	BamABCDE complex OM biogenesis outer membrane pore‑forming assembly factor
Rejected: Position hash score below cutoff.

TCTTTCACCGATTTGTTACCGGAGAAAGTAATGCTGGCAATGGTCGGACGTTCTTTTACCTGAACCAGAAGGGTATCACCATCACGAAGGACGCGAACATCCTCAAAGTTGCCGGTAGCAAACAGAGCGCGAATGGTATTACTGATATCTTCATCATTAACCGTGTCGCCTGTGCGCACCGGCATACTGAGGAGGGCCGCACCAACGGCGACACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/198247‑198033 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgacacgGTTAATGATGAAGATATCAGTAATACCATTCGCGCTCTGTTTGCTACCGGCAACTTTGAGGATGTTCGCGTCCTTCGTGATGGTGATACCCTTCTGGTTCAGGTAAAAGAACGTCCGACCATTGCCAGCATTACTTTCTCCGGTAACAAATCGGTGAAAGATGACATGCTGAAGCAAAACCTCGAGGCTTCTGGTGTGCGTGTGGGCG  >  NC_000913/198087‑198294                                                                                                                                                                                                                                                                                                                                                                                                                                         cgatctACCGATTTGTTACCGGAGAAAGTAATGCTGGCAATGGTCGGACGTTCTTTTACCTGAACCAGAAGGGTATCACCATCACGAAGGACGCGAACATCCTCAAAGTTGCCGGTAGCAAACAGAGCGCGAATGGTATTACTGATATCTTCATCATTAACCGTGTCGCCTGTGCGCACCGGCATACTGAGGAGGGCCGCACCAACGGCG                                                                                                                                                                                                                       <  1:301344/204‑1       ACCGATTTGTTACCGGAGAAAGTAATGCTGGCAATGGTCGGACGTTCTTTTACCTGAACCAGAAGGGTATCACCATCACGAAGGACGCGAACATCCTCAAAGTTGCCGGTAGCAAACAGAGCGCGAATGGTATTACTGATATCTTCATCATTAACCGTGTCGCCTGTGCGCACCGGCATACTGAGGAGGGCCGCACCAACGGCGAgatcg                                                                                                                                                                                                                 >  2:301357/1‑205                                      CAATGGTCGGACGTTCTTTTACCTGAACCAGAAGGGTATCACCATCACGAAGGACGCGAACATCCTCAAAGTTGCCGGTAGCAAACAGAGCGCGAATGGAATTACTGATATCTTCATCATTTACCGTGTCGCCATTGCGCATCGTCATACTGAGGAGGGCCGCACCAACGGCGACACGGTTAATGATGAAGATATCAGTAATACCATTCG                                                                                                                                                                                  >  2:368819/1‑210                                                            CTGAACCAGAAGGGTATCACCATCACGAAGGACGCGAACATCCTCAAAGTTGCCGGTAGCAAACAGAGCGCGAATGGTATTACTGATATCTTCATCATTAACCGTGTCGCCTGTGCGCACCGGCATACTGAGGAGGGCCGCACCAACGGCGACACGGTTAATGATGAAGATATCAGTAATACCATTCGCGCTCTGTTTGCTACCGGCAAC                                                                                                                                                            <  1:368799/210‑1                                                                                                                                                                ACCGTGTCGCCTGTGCGCACCGGCATACTGAGGAGGGCCGCACCAACGGCGACACGGTTAATGATGAAGATATCAGTAATACCATTCGCGCTCTGTTAGCTACCGGCAACTTTGAGGATGTTCGCGTCCTTCGTGATGGTGATACCCTTCTGGTTCAGGTAAAAGACCGTCCGACCATTGCCAGCATTACTTTCTCCGGTAACAAATCGt                                                        >  1:515893/1‑209                                                                                                                                                                                                                      CGGTTAATGATGAAGATATCAGTAATACCATTCGCGCTCTGTTTGCTACCGGCAACTTTGAGGATGTTCGCGTCCTTCGTGATGGTGATACCCTTCTGGTTCAGGTAAAAGAACGTCCGACCATTGCCAGCATTACTTTCTCCGGTAACAAATCGGTGAAAGATGACATGCTGAAGCAAAACCTCGAGGCTTCTGGTGTGCGTGTGGGCG  >  1:434775/1‑210                                                                                                                                                                                                                                                                                                                                                                                                                                         TCTTTCACCGATTTGTTACCGGAGAAAGTAATGCTGGCAATGGTCGGACGTTCTTTTACCTGAACCAGAAGGGTATCACCATCACGAAGGACGCGAACATCCTCAAAGTTGCCGGTAGCAAACAGAGCGCGAATGGTATTACTGATATCTTCATCATTAACCGTGTCGCCTGTGCGCACCGGCATACTGAGGAGGGCCGCACCAACGGCGACACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/198247‑198033 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcgacacgGTTAATGATGAAGATATCAGTAATACCATTCGCGCTCTGTTTGCTACCGGCAACTTTGAGGATGTTCGCGTCCTTCGTGATGGTGATACCCTTCTGGTTCAGGTAAAAGAACGTCCGACCATTGCCAGCATTACTTTCTCCGGTAACAAATCGGTGAAAGATGACATGCTGAAGCAAAACCTCGAGGCTTCTGGTGTGCGTGTGGGCG  >  NC_000913/198087‑198294

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.