New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3442135	49 (0.980)	3 (0.060)	3/400	8.8	6.1%	coding (337/357 nt)	rpsM	30S ribosomal subunit protein S13
	?	NC_000913	= 3442202	46 (0.960)					coding (270/357 nt)	rpsM	30S ribosomal subunit protein S13
Rejected: Position hash score below cutoff.

ACGGAGTGGATTTGCGAGAACCACGGAAACCGGAACCACCGGCTGTTGCCCAACCCAACGCGTTACCCTGACGATCAGTGATAGTCACGATGGTGTTGTTGAAAGAAGCATGGATATGAGCCACGCCGTCAGAGACTTGTTTTCTTACACGTTTACGTGCACGAATTGGTGCCTTTGCCATTATTCAATCACCCCGATTATTTCTTGATCGGTTTGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3441918‑3442135 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggtttgcgTCATCGTCGTGGTCTCCCGGTTCGCGGTCAGCGTACCAAGACCAACGCACGTACCCGTAAGGGTCCGCGCAAACCGATCAAGAAATAATCGGGGTGATTGAATAATGGCAAAGGCACCAATTCGTGCACGTAAACGTGTAAGAAAACAAGTCTCTGACGG  <  NC_000913/3442202‑3442043                                                                                                                                                                                                                                                                                                                                                                                            ACGGAGTGTAGTTGCGAGAACAACGGAAAGCGGAACCCCAGGCTGTTGCCCAACGCAACGCGTTACCCTGACGATCAGTGATAGTCACGATGGTGTTGTTGAAAGAAGCATGGATATGAGCCACGCCGTCAGAGACTTGTTTTCTTACACGTTTACGTGCACGAATTGGTGCCTTTGCCATTATTCAATCACCCCGATTATTTCTTGATC                                                                                                                                                                          <  1:485644/210‑1  CGGAGTGGATTTGCGAGAACCACGGAAACCGGAACCACCGGCTGTTGCCCAACCCAACGCGTTACCCTGACGATCAGTGATAGTCACGATGGTGTTGTTGAAAGAAGCATGGATATGAGCCACGCCGTCAGAGACTTGTTTTCTTACACGTTTACGTGCACGAATTGGTGCCTTTGCCATTATTCAATCACCCCGATTATTTCTTGATCG                                                                                                                                                                         >  2:67520/1‑210     AGTGGATTTGCGAGAACCACGGAAACCGGAACCACCGGCTGTTGCCCAACCCAACGCGTTACCCTGACGATCAGTGATAGTCACGATGGTTTTGTTGAAAGAAGCATGGATATGAGCCACGCCGTCAGAGACTTGTTTTCTTACACGTTTACGTGCACGAATTGGTGCCTTTGCCATTATTCAATCACCCCGATTATTTCTTGATCGGTT                                                                                                                                                                      <  2:560487/210‑1      GTGGATTTGCGAGAACCACGGAAACCGGAACCACCGGCTGTTGCCCAACCCAACGCGTTACCCTGACGATCAGTGATAGTCACGATGGTGTTGTTGAAAGAAGCATGGATATGAGCCACGCCGTCAGAGACTTGTTTTCTTACACGTTTACGTGCACGAATTGGTGCCTTTGCCATTATTCAATCACCCCGATTATTTCTTGATCGGTTT                                                                                                                                                                     >  2:576528/1‑210        GGATTTGCGAGAACCACGGAAACCGGAACCACCGGCTGTTGCCCAACCCAACGCGTTACCCTGACGATCAGTGATAGTCACGATGGTGTTGTTGAAAGAAGCATGGATATGAGCCACGCCGTCAGAGACTTGTTTTCTTACACGTTTACGTGCACGAATTGGTGCCTTTGCCATTATTCAATCACCCCGATTATTTCTTGATCGGTTTGC                                                                                                                                                                   >  2:569802/1‑210                                                                                       ACGATGGTGTTGTTGAAAGAAGCATGGATATGAGCCACGCCGTCAGAGACTTGTTTTCTTACACGTTTACGTGCACGAATTGGTGCCTTTGCCATTATTCAATCACCCCGATTATTTCTTGATCGGTTTGCGTCATCGTCGTGGTCTCCCGGTTCGCGGTCAGCGTACCAAGACCAACGCACGTACCCGTAAGGGTCCGCGCAAACCGAT                                                                                    <  1:359039/210‑1                                                                                         GATGGTGTTGTTGAAAGAAGCATGGATATGAGCCACGCCGTCAGAGACTTGTTTTCTTACACGTTTACGTGCACGAATTGGTGCCTTTGCCATTATTCAATCACCCCGATTATTTCTTGATCGGTTTGCGTCATCGTCGTGGTCTCCCGGTTCGCGGTCAGCGTACCAAGACCAACGCACGTACCCGTAAGGGTCCGCGCAAACCGATCA                                                                                  <  2:349958/210‑1                                                                                                                                                                         GTGCCCTTGCCATTATTCAATCACCCCGATTATTTCTTGATCGGTTTGCGTCATCGTCGTGGTCTCCCGGTTCGCGGTCAGCGTACCAAGACCAACGCACGTACCCGTAAGGGTCCGCGCAAACCGATCAAGAAATAATCGGGGTGATTGAATAATGGCAAAGGCACCCATTCGTGCACGTAAACGTGTAAGAAACCAAGTCTCTGACGG  >  1:153477/1‑210                                                                                                                                                                                                                                                                                                                                                                                            ACGGAGTGGATTTGCGAGAACCACGGAAACCGGAACCACCGGCTGTTGCCCAACCCAACGCGTTACCCTGACGATCAGTGATAGTCACGATGGTGTTGTTGAAAGAAGCATGGATATGAGCCACGCCGTCAGAGACTTGTTTTCTTACACGTTTACGTGCACGAATTGGTGCCTTTGCCATTATTCAATCACCCCGATTATTTCTTGATCGGTTTGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3441918‑3442135 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggtttgcgTCATCGTCGTGGTCTCCCGGTTCGCGGTCAGCGTACCAAGACCAACGCACGTACCCGTAAGGGTCCGCGCAAACCGATCAAGAAATAATCGGGGTGATTGAATAATGGCAAAGGCACCAATTCGTGCACGTAAACGTGTAAGAAAACAAGTCTCTGACGG  <  NC_000913/3442202‑3442043

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.