Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*DH12,169,5770TG28.6% 217.8 / 41.9 188R661R (CGA→CGC) rsxCelectron transporter RsxC
Reads supporting (aligned to +/- strand):  ref base T (32/95);  new base G (6/45);  total (47/141)
Fisher's exact test for biased strand distribution p-value = 6.74e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 190 total aligned reads displayed.

TGTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTG‑TTCTTCTGGCTCCGCATTAGCCGGTTGCTGTT‑CCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTT  >  DH1/2169428‑2169719
                                                                                                                                                       |                                                                                                                                              
tGTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACGGG‑TTATTCTGTCTACGAATTAGACGGTTGCTTTT‑CCAGTTTGCGTGCTTTGGCTc                                                                                                                                               >  8:51645/1‑151 (MQ=17)
 gctcttctGGTACCGCATTAGCCTGGTGCTGTTCCAGCTTGCGGGCGTTGGCGCGTGCAATAGCCGCGTCGACTGCAGCTTTGCGCGGATCAACCTG‑TTCTTCTGGCTCCGCATTAGCCGGTTGCTGTT‑CCCGTTTGCGCGCTTTGGCTc                                                                                                                                               <  5:1231640/148‑1 (MQ=25)
 gTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTG‑TTCTTCTGGCTCCGCATTAGCCGGTTGCTGTT‑CCCGTTTGCGCGCTTTGGCTCg                                                                                                                                              <  5:865492/151‑1 (MQ=255)
 gTTCTTCTGGTACCGCATTAGCCTGGTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTG‑TTCTTCTGGCTCCGCATTAGCCGGTTGCTGTT‑CCCGTTTGCGCGCTTTGGCt                                                                                                                                                <  7:501140/149‑1 (MQ=255)
   tcttctGGCACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTG‑TTCTTCTGGCTCCGCATTAGCCGGTTGCTGTT‑CCCGTTTGCGCGCTTTGGCTCgg                                                                                                                                             <  6:336499/150‑1 (MQ=255)
       atGGTACCGCTTTAGCCTGTTGCTGTTCCAGCTTGCTTGCTTTGGCGCGTGCAATAGCCGCTGCTACGGCAGCTTTGCGCGGATCAACCTG‑TTCTTCTGGCTCCGCATTAGCCGGTTGCTGTT‑CCCGTTTGCGCGCTTTGGCTCGGGCAAt                                                                                                                                        <  4:501799/150‑1 (MQ=255)
         ggTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTGGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTG‑TTCTTCTGGCTCCGCATTAGCCGGTTGCTGTT‑CCCGTTTGCGCGCTTTGGCTCGGGCAATAg                                                                                                                                      <  8:569855/151‑1 (MQ=255)
           gtcctcATTAGCCTGTTGCTGGTCCAGGTTTCGTGCTTTGGCGCGTGCAATAGCCGCTTCTACTGCAGCTTTGCGCGTATCAACCTG‑GTCTTCTGGCTCCGCATTAGCCGGTTGCTGTT‑CCCGTTTGCGCGCTTTGGCTCGGGCAATAGCg                                                                                                                                    <  3:58228/146‑1 (MQ=255)
            acctgaTTAGCCTGTTGCTGTTCCTGCTTGTGTGCTTTTGGGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTG‑TTCTTCTGGGTCCGCATTAGCGGGTTGGTGTT‑CCCGTTTGCGGGCTTTGGCTCGGGCAATAGCg                                                                                                                                    <  4:998866/145‑1 (MQ=25)
            aCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGC‑TTGCGCGGATCAACCTG‑TTCTTCTGGCTCCGCATTAGCCGGTTGCTGTT‑CCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGc                                                                                                                                  <  5:623275/151‑1 (MQ=255)
             cgtctttAGCCTTTTGCTGTTCGTCTTTGCTTGCTTTAGCGCGTGCAATAGCCGCTGCTACTGCAGCTTTGCGCGGATCAACCTG‑TTCTTCTGGCTCCGCATTAGCCTGTTGCTGTT‑CCCGTTTGCGCGCTTTGGCTCGGGCAATAGCgg                                                                                                                                   <  8:1349797/145‑1 (MQ=17)
              ggCATTATCCTGTTGCTGTTCCTGCTTGCTTGCTTTTGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTG‑TTCTTCTGGCTCCGCATTAGCCGGTTGCTGTT‑CCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCt                                                                                                                                 <  2:575664/150‑1 (MQ=255)
               gCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTCGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTG‑TTCTTCTGGCTCCGCATTAGCCGGTTGCTGTT‑CCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCtt                                                                                                                                <  8:191174/151‑1 (MQ=255)
                 aTTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGAGAGCGGATTAGCGCGGATGAACCTG‑ATCTTCTGGAACCCCATTTACCTGTAGCTGTT‑CCCCGTTGCGAGATATTGCACGGGCAATAGCGGCTTCg                                                                                                                              >  2:453638/1‑151 (MQ=2)
                 aTTAGCCTGTTGCTGTGCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTG‑TTCTTCTGGCTCCGCATTAGCCGGTTGCTGTT‑CCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCg                                                                                                                              <  5:1168978/151‑1 (MQ=255)
                 aTTAGCCTGGTGCTGTGCCAGATTGCGTGCTTTGTCGCGTGGATTAGCCGCTTCGACTTCAGCTTTGCGCGGATCTAGCTG‑TTCTTCTGGCTCGGCATTAGCCTGTTGCTGTT‑GCAGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCg                                                                                                                              <  1:1047013/151‑1 (MQ=17)
                    aGCCTGTTGCTGTTCGTGTTTGCTTGCTTTTGCGCGTGCAATAGCCGCTGCGACGGCAGCTTTGCGCGGATCAACCTG‑TTCTTCTGGCTCCGCATTAGCCGGTTGCTGTT‑CCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAc                                                                                                                            <  2:349634/150‑1 (MQ=17)
                    aGCCTGTTGCTGTTCGAGCTTGCGTGCGTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTG‑TTCTTCTGGCTCCGCATTAGCCGGTTGCTGTT‑CCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAc                                                                                                                            <  5:511754/150‑1 (MQ=255)
                    aGCCTGTTGCTGTTCCCGCTTGCGGGCGTTCGCGCGTGCAATAGCCGCTGCGACTGCAGCTTTGCGCGGATCAACCTG‑TTCTTCTGGCTCCGCATTAGCCGGTTGCTGTT‑CCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAcg                                                                                                                           <  7:1035801/151‑1 (MQ=17)
                    aGCCTGGTGCTGTTCCAGCTTGCGTGCGTTGGCGCGGGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTG‑TTCTTCTGGCTCCGCATTAGCCGGTTGCTGTT‑CCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAc                                                                                                                            <  3:9469/150‑1 (MQ=255)
                    aGCCTGCTGCTGTTCCAGCTTGCGTGCGTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTG‑TTCTTCTGGCTCCGCATTAGCCGGTTGCTGTT‑CCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAc                                                                                                                            <  4:107560/150‑1 (MQ=255)
                     cccTGGTGCTGGGCCCGCTTGCGGGCCTTGGCGCGTGCAATAGCCGCGGCCACGGCAGCTTTGCGCGGATCAACCTG‑TTCTTCTGGCTCCGCATTAGCCGGTTGCTGTT‑CCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAcgg                                                                                                                          <  2:323170/150‑1 (MQ=17)
                        tGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGGTTTCCGCGGATCGCCCTG‑TTGTTCTGGTTCGGGATTATCCTGTTGGTGGT‑CAAGCTTGCGCGGGTGGGCTCCGGGCAGCCCGGCTTCGCcggg                                                                                                                         >  5:211351/1‑148 (MQ=0)
                         gatGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTG‑TTCTTCTGGCTCCGCATTAGCCGGTTGCTGTT‑CCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAcggcg                                                                                                                        <  5:1355825/147‑1 (MQ=255)
                            gCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCATCTTTACGCGGAACTAGATG‑TTATTCTTGGTAGGCAGTAGCGAGTTGAAGTT‑CCAGGTTGAGAGCTTTGGAAAGGGCAATAGCGGCTTCGACgggggcggt                                                                                                                   >  6:425187/1‑148 (MQ=2)
                            gCTGTGCCAGCTTGCGGGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTG‑TTCTTCTGGCTCCGCATTAGCCGGTTGCTGTT‑CCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCtt                                                                                                                    <  3:1264207/150‑1 (MQ=255)
                            gCTGGTCCTGCTTGCTTGCTTGCGCGCGGGCAATAGCCGCGTCTACTGCAGCTTTGCGCGGATCAACCTG‑TTCTTCTGGCACCGCATTAGCCGGTTGCTGTT‑CCCGTTTGCGCGCTTTGGCTCGTGCAATAGCGGCTTCGACGGCGGCttt                                                                                                                   <  6:935511/151‑1 (MQ=14)
                            gCTGGTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTG‑TTCTTCTGGCTCCGCATTAGCCGGTTGCTGTT‑CCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCttt                                                                                                                   <  5:1305950/151‑1 (MQ=255)
                            gCTGGTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTG‑TTCTTCTGGCTCCGCATTAGCCGGTTGCTGTT‑CCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCttt                                                                                                                   <  7:398966/151‑1 (MQ=255)
                               gttcgtgttttcttGCTTTGGCGCGTGCAATAGCCGCGGCTACTGCAGCTTTGCGCGGATCAACCTG‑TTCTTCTGGCTCCGCATTAGCCGGTTGCTGTT‑CCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTg                                                                                                                  <  2:614505/136‑1 (MQ=17)
                               gttcgcgCTTGCGTGCTTTTGCGCGTGCAATAGCCGCTTCTACTGCAGCTTTGCGCGGATCAACCTG‑TTCTTCTGGCTCCGCATTAGCCGGTTGCTGTT‑CCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTgc                                                                                                                 <  2:276772/144‑1 (MQ=255)
                               gTTCGAGCTTGCTTGCGTTGGCGCGGGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTG‑TTCTTCTGGCTCCGCATTAGCCGGTTGCTGTT‑CCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTgcg                                                                                                                <  1:101898/151‑1 (MQ=255)
                               gTTCCTGCTTGCGGGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTG‑TTCTTCTGGCTCCGCATTAGCCGGTTGCTGTT‑CCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTgc                                                                                                                 <  1:1185076/150‑1 (MQ=255)
                               gTTCCAGCTTGCGGGCGTGCGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTG‑TTCTTCTGGCTCCGCATTAGCCGGTTGCTGTT‑CCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTgc                                                                                                                 <  5:154146/150‑1 (MQ=255)
                                 tcgtgttttcGTGCCTGGGCGCGTGCAATAGCCGCTTCTACTGCAGCTTTGCGCGGATCAACCTG‑TTCTTCTGGCTCCGCATTAGCCGGTTGCTGTT‑CCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTgcgc                                                                                                               <  4:155457/141‑1 (MQ=17)
                                   cAGCTTGCTGGCGTTCGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTG‑TTCTTCTGGCTCCGCATTAGCCGGTTGCTGTT‑CCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGa                                                                                                            <  7:1123353/151‑1 (MQ=255)
                                          cgggcgttagcgcGTGCAATAGCCGCGGCGACGGCAGCTTTGCGCGGATCAACCTG‑TTCTTCTGGCTCCGCATTAGCCGGTTGCTGTT‑CCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCt                                                                                                     <  1:914596/142‑1 (MQ=255)
                                           gggccttcgcgcGTGCAATAGCCGCGGCAACTGCCGCGTTGCGCCGATCCACCTG‑TTCTTCTGGCTCCGCATTAGCCTGTTGCTGTT‑CCCGTTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCGACCtg                                                                                                    <  2:733380/143‑1 (MQ=11)
                                            ggccgtGGCGCGTGCAATAGCCGCGGCCACGGCCGCGTTGCGCGGATCCACCTG‑GTCTTCGGGCTCCGCATTAGCCGGGTGCTGGG‑CCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCtgt                                                                                                   <  3:1001095/146‑1 (MQ=17)
                                              cTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCGACCTG‑TGCTTATGGCTCAGCTGTGGACTCGTGTGGGT‑AGAGTGTGGGGGGTTTGGCTCGGGCTGTATGGGATTAGACGGCGGCTTTGGGCGGGTCgggcggtgg                                                                                                 >  1:1307489/1‑143 (MQ=9)
                                               gtgcgcgaggtcAATAGCCGCTTACACTGTTTCTTTGCGCGTATCTATTTG‑TTTTTCTGGCTCGGTATTATCCTTTTGCTGGT‑CGTGTTTTCGTGCTTTTGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCtgttct                                                                                                <  8:1133619/140‑3 (MQ=2)
                                                  cgcgcGGGCAATAGCCGCGTCGACTGCAGCTTTGCGCGGATCAACCTG‑TTCTTCTGGCTCCGCATTAGCCGGTTGCTGTT‑CCCGTTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTc                                                                                              <  3:1140337/149‑1 (MQ=255)
                                                     ccgggCAATAGCCGCTTCGACGGCAGCTCTG‑GTGTGTGGACGGGCTTCTTCTGGCCCCGCCTTCTCCTGTTGCTGTT‑CCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGc                                                                                          <  1:1245503/147‑1 (MQ=11)
                                                       gggCAATAGCCGCTTCTACTGCAGCTTTGCGCGGATCAACCTG‑TTCTTCTGGCTCCGCATTAGCCTGTTGCTGTT‑CCCGTTTGCGCGCTTTTGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTc                                                                                        <  4:986428/149‑1 (MQ=14)
                                                       gTGCAATAGCCGCTTCTACTGCAGCTTTGCGCGGATCAACCTG‑TTCTTCTGGCTCCGCATTAGCCTGTTGCTGTT‑CCCGTTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTc                                                                                        <  8:1040970/151‑1 (MQ=255)
                                                         gCAATAGCCGCGGCCACGGCAGCTTTGCGCGGATCAACCTG‑TTCTTCTGGCACCGCATTAGCCGGTTGCTGTT‑CCCGCTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCgg                                                                                      <  3:832265/151‑1 (MQ=255)
                                                           aaTAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTG‑TTCTTCTGGCTCCGCATTAGCCGGTTGCTGTT‑CCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGCTCGCCCTGTTGTTCTGGCTCGGc                                                                                     >  3:453610/1‑150 (MQ=255)
                                                            aTAGCCGCTTCGACGGCAGCTTTGCGCGGATCACCCTG‑TTCTTCTGGCTCCGCATTAGCCGGTTGCTGTT‑CCCGTTTGCGCGCTTTGGCGCGGGCTATAGCGGCTTAGACGGCGGGTTTGCGGGGATCGGCCTTGTGTTGTGGCTCGGc                                                                                     >  7:1192781/1‑149 (MQ=255)
                                                              aGCCGCTTCTACTGCAGCTTTGCGCAGATCAACCTG‑TTCTTCTGGCTCCGCATTAGCCGGGTGCTGTT‑CCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCAtt                                                                                  <  3:191753/150‑1 (MQ=255)
                                                              aGCCGCTGCTACTGCAGCTTTGCGCGGATCAACCTG‑TTCTTCTTGCTCCGCATTAGCCGGTTGCTGTT‑CCCGTTTGCGGGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTa                                                                                 <  4:360267/151‑1 (MQ=17)
                                                              aGCCGCGTCCACGGCAGCTTTGCGCGGATCAACCTG‑GTCTTCTGGCTCCGCATTAGCCGGTTGCTGTT‑CCCGTTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCAtt                                                                                  <  2:1072495/150‑1 (MQ=255)
                                                               gCCGCGTCGACTGCAGCTTTGCGCGGATCAACCTG‑TTCTTCTGGCTCCGCATTAGCCGGTTGCTGTT‑CCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAg                                                                                <  1:300529/151‑1 (MQ=255)
                                                               cgcGCTTCCGCGCCCGCCTTGCGCGGATCGACTTG‑TTTTTATTGATCCGCATTAGCCTGTTTGTTTT‑CCAGGTTTAGCGCTTTTTTACGTTCAATAGGGGCTTCGTCGGTTGCTTTGCGCGGATCGACCTGTTGTTCTGGTTCCGCATTAg                                                                                <  8:121026/149‑1 (MQ=2)
                                                                  gCTTCTACTGCAGCTTTGCGCGGATAAACCTG‑TTCTTCTGGCTCCGCATTATCCGGTTGCTGTT‑CCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCt                                                                             <  8:723565/151‑1 (MQ=255)
                                                                    ttCGACGGCAGCTCTGCGCGGATCAACCTG‑TTCTTCTGGCTCCGCATTAGCCGGTTGCTGTT‑CCAGATTGCGCGCTTTGGGGCGGGCATTAGAGGATTCCACGGCCGAAAAGAGAGTATCGACCGGTTGTGCTGGTTCGGGATTAGCATGt                                                                           >  7:748454/1‑151 (MQ=12)
                                                                     tCGACGGCTGCTTTGCGCGGATCAACCAG‑TACTTCTGGCTCCTCATTAGCCTGTTGCTGTT‑CCCGTTTGCTGGCTTTTGCGCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTg                                                                            <  8:980677/149‑1 (MQ=14)
                                                                       gACTGCAGCTTTTCTCGGATCAAGATG‑TTCTTCTGTTCCCTTATTATCCTGGTGCTGTT‑CGGGTTTTCTGGCTTTCGCGCGGGCAATAGCCGCTTCTACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGc                                                                        <  4:1298170/151‑1 (MQ=2)
                                                                          ggCAGCTTTGCGCGGATCAACCTG‑TTCTTCTGGCTCCGCATTAGCCTGTTGCTGTT‑CCAGGTTGCGCGCTTTGGCGCGGGc                                                                                                                                           >  7:1303517/1‑81 (MQ=11)
                                                                           gCAGCTTTGCGCGGATCAACCTG‑TTCTTCTGGCTCCGCATTAGCCGGTTGCTGTT‑CCCGATTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTg                                                                                                                  >  2:167381/1‑105 (MQ=255)
                                                                           gCAGCTTTGCGCGGATCAACCTG‑GTCTTCTGGCTCCGCATTAGCCTGGTGCTGTG‑CCCGTTTGCGGGCTTTGGCGCGGGCAATAGCGGCTTCGACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGtt                                                                    <  3:763693/151‑1 (MQ=14)
                                                                           gCAGCTTTGCGCGGAGCAACCTG‑TTCTTCTGGCTCCGCATGAGCCGGTTGCTGGT‑CCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGtt                                                                    <  3:441704/151‑1 (MQ=255)
                                                                              gggttGCGCGGATCAAGCTG‑TTCTTCTGGCTCCGCTATAGCCTGTTGCTGTT‑CCCGTTTGCGGGCGTTTGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCa                                                                 <  3:433656/148‑1 (MQ=14)
                                                                              gcgttGCGCGGATCATCCTC‑TTCTTCTGGGAGCGCATTAGCCTGTTGCTGTT‑CCCGTTTGCCGGCTTTCGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCa                                                                 <  5:673506/148‑1 (MQ=14)
                                                                              gatttGCGCGGATCTACGTG‑GTCTTCTTGCTCGGCATTATCCTTTTGCTGTT‑CGGGTTTTCTGGCGTGCGCGCGGGCAATAGCCGCTTCTACTGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCa                                                                 <  8:900875/149‑1 (MQ=2)
                                                                              gCTTTGCGCGGATCAACCTG‑TTCTTCTGGATCCGCATTAACATCTTGATCTTACACGTTTCCAC‑AGGAGTCACGGGCATAAGCGGCTTATACGGCGGGGTTGAGCGGATAGAACTGTTGTTCTGGGTCGGCGTTAGGCTgggggggggccg                                                                 >  7:636627/1‑140 (MQ=255)
                                                                               cccagagctcctccaCCTG‑TTCTTCTTGATCTGTATTAGCCGGTGGGTGCA‑CCGGCATGCCCCCTGTGGCTGCGCCTATAGCGGCTCAGACGGCTGTTTCGCGCGGATCTACCTGTTGTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCAg                                                                <  6:183085/137‑1 (MQ=2)
                                                                                tttGCGCGGATCAACCTG‑TTCTTCTGGCTCCGCATTAGCCGGTTGCTGTT‑CCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCttt                                                                                                                   >  2:292031/1‑99 (MQ=255)
                                                                                 ttGCGCGGATCAACCTG‑TTCTTCTGGCTCCGCATTAGCCGGTTGCTGTT‑CCCGATTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCTACGGCAGATTTACGAGGATCAACATCTTTTTCTGCCTCGTAATTATCCTGATGATCTTcc                                                                  >  4:440982/1‑147 (MQ=14)
                                                                                 gtgggcgGAGCAACGTG‑CTCTTCTGGCTCCGCATTAGCCTGTTGCTGGT‑CGCCTTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCCACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAg                                                                <  3:258202/145‑1 (MQ=14)
                                                                                    ggcgGATCAACCTG‑TTCTTCTGGCTCCGCATTAGCCGGGTGCTGTT‑CCCGTTTGCGCGCTTTCGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGc                                                           <  7:155528/150‑1 (MQ=255)
                                                                                    cgcgGATGTACCTG‑CTCTTCTGGCTCGGGTTTAGCCTTCTGCTGGT‑CGCGTTTTCGGGCTTTTGCGCGGGCAATAGCGGCTGCTACGGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTg                                                            <  8:201805/150‑1 (MQ=14)
                                                                                       ggcccacccTC‑TTCTTCTGGCTCCGCATTAGCCTGTTGCTGTT‑CCCGTTTGCGCGCTTTGGATGGTGGAATAGGGTCTTCGACGGCGGCTTGGAGCGGTTCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTg                                                        <  7:753783/144‑1 (MQ=14)
                                                                                       ggaggacgcTG‑TTCTTCTCGCTCGTTTTGAGCCGTGTGCTGTG‑CGGGTTTTCTGGCTTTTGCGCGGGCAATAGGGGCTGCTACTGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTg                                                        <  6:1168682/143‑1 (MQ=2)
                                                                                         tagctaagaggtgttctGGCTCCGCATTATCCTGCTGCTGTT‑CGGGTTTGCTGGCTTGGGCGCGGGCAATAGCCGCTTCTACGGCGGCTTTGCGCGGATCCACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTg                                                        <  8:622461/137‑1 (MQ=11)
                                                                                          gccagcTG‑TTCGGCTGGCTCCGCATGAGCCGGGTGCTGGG‑CCCGTTTTCTGGCCTTCGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCtt                                                     <  5:337571/146‑1 (MQ=17)
                                                                                           gcgaccgcatctcctGACTCGGCATCAGACGGGTGCTGTT‑CCCCGGTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCtt                                                     <  1:1129171/142‑1 (MQ=11)
                                                                                            aaCCTG‑TTCTTCTGGCTCCGCATTAGCCGGTTGCTGTT‑CCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCtg                                                                                                    >  2:1282874/1‑102 (MQ=255)
                                                                                                tG‑TTCTTATGGCTCCGTTTTATCCTGTTGCTGTT‑CCGGTTTTTTGGCTTTTGCGCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCa                                                <  4:317844/150‑1 (MQ=14)
                                                                                                 g‑TTCTTCTGGCTCCGCATTAGCCGGTTGCTGTT‑CCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAc                                                                                                                            >  4:695967/1‑73 (MQ=255)
                                                                                                 g‑TTCTTCTGGCTCCGCATTAGCCGGTTGCTGTT‑CCCGTTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCAc                                               <  7:1225471/150‑1 (MQ=255)
                                                                                                       gccgggaccGCATTAGACGCGTGCTGTG‑CGCGGATGCGGGCGTGCGCGCGGGCAATAGCCGCGGCTACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACNGGCaa                                         <  1:901167/144‑1 (MQ=9)
                                                                                                        ctGGCTCCGCATTAGCCGGTTGCTGTT‑CCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGATCCGAAATAGCATGATGCTCTTCAAGCTTAAGTGATTTGTCACGGGGAAt                                        >  8:16225/1‑151 (MQ=14)
                                                                                                         cgcccccccaggccccGGTTGCTGTT‑CCCCAAGCCGCCCTCGGGCTCCGCCAATCCCGGCCGCGACTGCAGCTCAGCGCGGAGCGCCCCCGAGCTCTGGCTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATa                                       <  7:793616/137‑1 (MQ=2)
                                                                                                          ggCTCGTCATTAGCCTGTTGCTGGT‑CGGGTTTGTGGGCCTGTGCGCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAg                                      <  8:1272817/151‑1 (MQ=11)
                                                                                                          ggCTCCGCAGTAGCCTGGTGCTGGT‑CGCGTTTGGGGGCGTTGGCGCGGGCAATAGCCGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAg                                      <  1:502048/151‑1 (MQ=14)
                                                                                                            ggggggcttacgctgTTGCTGTG‑CCGCTTTGCGGGCGTTGGCGCGGGCAATAGCCGCGTCCACTGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCg                                    <  3:1167984/137‑1 (MQ=14)
                                                                                                                 cATTAGCCGGTTGCTGTT‑CCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGTTcc                                                                                       >  1:1285100/1‑94 (MQ=255)
                                                                                                                   ttATCCTGTTGCTGTT‑CGGGTTTGCTGGCTTTTGCGCGGGCAATAGCCGCTGCTACTGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCg                              <  6:747141/150‑1 (MQ=14)
                                                                                                                    tatccGGTTGCTGTT‑CGCGTTTTCGGGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGa                             <  4:1130092/147‑1 (MQ=14)
                                                                                                                    tAGCCGGTTGCTGTT‑CCCGTTTGCGCGCTTTGGATCGGTAAATCACGCGTTAGAACTCGACTAACCACATATCAACGAGTTGTTCTTCGTCTGCATTATAATATTTCTGTTCCAGCTTGCGGGCTTTGGCTCGGGcgagcgggcgtgcgcc                            >  1:697753/1‑136 (MQ=255)
                                                                                                                       ccGGATGCTGTT‑CCCGTCTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAcggc                         <  4:453773/151‑1 (MQ=255)
                                                                                                                            tGCTGTT‑CCCGTTTGCGGGCGTTGGCGCGGGCAATAGCCGCGTCTACGGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCt                     <  4:189787/150‑1 (MQ=14)
                                                                                                                             gCTGTT‑CCAGTTTGCGAGGGATGGCTCGGGCAAGAGCCGCTTCGCCGGCGTCTGTGCGCGCATCGAGCTGTTGTCCTTGCTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCttt                   <  7:207900/151‑1 (MQ=11)
                                                                                                                               tGTT‑CCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCAACGGCGGGTTTACGAGGATCGCCATGTTGTTCTGGGTCGGGAGTAGCATGATGCTCTTCCAGATTGCCAGATTTGTCCCGTTCAATAGCTGCTTcacctgcaagtatac                 >  8:349986/1‑137 (MQ=255)
                                                                                                                               tGTT‑CCCGTTTGCGCGCTTTGGCTCGGGCAATAGAGGGTTCGCCGTCGGCTTTGCGAGGATGGACGTGTTGTTATGGGTCCGCATTAGGCTGTTGATGTTACAGCTTGCGAGCTTTGGCGCGGGCGATGGGGGGTTCGGCGGCGGGttggg                 >  4:903741/1‑148 (MQ=255)
                                                                                                                                       gTTTGCGCGCATTCGCGCGTGCAATAGCGGCTTCTACTGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGTCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTTGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATc          <  8:974743/151‑1 (MQ=14)
                                                                                                                                        gttgctggccttGGCGCGGGCAATAGCCGCGGCGACGGCGGCTTTGCGCGGAGCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGGTCCAGCTTGCGGGCTTTGGCCCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCg         <  7:1355619/141‑1 (MQ=11)
                                                                                                                                            tgttctgtGGCTAGGCCAATATTTGCTTAGACGACGGGCTTGCGATGATCTACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTTTGGCGCGGGCGATAGCTGCTTCAACGGCAGTTTTACGTGGATcagca      <  4:1012759/143‑5 (MQ=17)
                                                                                                                                               gcTTTGGCTCGTGCAATAGGCGCTTCGACGGCTGCTTTGCGCTGAGCGACCTGTTCTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGtt  <  7:76030/151‑1 (MQ=11)
                                                                                                                                               gcTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCg                                                                                                         >  4:44944/1‑48 (MQ=35)
                                                                                                                                                       |                                                                                                                                              
TGTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTG‑TTCTTCTGGCTCCGCATTAGCCGGTTGCTGTT‑CCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTT  >  DH1/2169428‑2169719

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑