Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | DH1 | 2,169,548 | 0 | G | T | 26.2% | 607.4 / 71.6 | 349 | P671Q (CCG→CAG) | rsxC | electron transporter RsxC |
Reads supporting (aligned to +/- strand): ref base G (68/186); new base T (21/69); total (94/255) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 5.77e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 353 total aligned reads displayed.
CGGCAACTGCCGCTTTGCGCGGATCAACCTGTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGG > DH1/2169399‑2169698 | gCAACTGCCGCTTTGCGCGGATCAACCTGTTCTTCTGGTACCGCATTAGCCTGGTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGtt < 5:344069/151‑1 (MQ=255) gCAACTGCCGCGTTTCGCGGATCAACCTGTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTCGCGCGTGCAATAGCCGCTGCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGtt < 8:1613927/151‑1 (MQ=255) cAACTGCCGCTTTGCGCGGATCAACCTGTTCTTCTGGGACCGCATTAGACTGATGAAGATCCACATTTAGTGATTTAGAGCGTGCAAAAGACGATAACACGGAAGATTTCCGCTGATAAAAAAATACAACTGGCTCGGCATTAGCCGGTTg > 4:1409674/1‑151 (MQ=255) aCTGCCGCTTTGCGCGGATCAACCTGCTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCTGCTTTCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCt < 6:1906462/151‑1 (MQ=255) gCCGCTTTGCGCGGATCAACCTGTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTCCAATAGCCGCTTCGAAGGCATCTTTGCGCGGATCAACCTGTGCTTCTGGCTCCGCATTAGCAGCTTCCTGtt > 7:239850/1‑151 (MQ=18) gCCGCTTTGCGCGGATCAACCTGTTCTTCTGCTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCGTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGtt < 1:1234886/151‑1 (MQ=255) cGCTTTTCGTGTATCAACCTGTTCTTCTGGCTCCGCATTAGCCTTTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTcc < 4:1043470/151‑1 (MQ=17) gCTTTGCGCGGATCAACCTGTTCTTCTGGAACCGCATTAGCCTGTTGCTGTTCACCCTACCGTTCTTAGGAGCGTGCAAAAGACCCTTCGACGGCAGCTTTGCGCGGATCGAACTGTTCTTCTGGCTCGGCATTAGCCGGTTGCtcggccg > 3:1634780/1‑145 (MQ=14) gtttGCGCTGATGAAGCTGTTCTTCTGTTTCCGCATTATCCTTTTGCTGTTCGAGCTTGCTTGCTTTTGCGCGTGCAATAGCCGCTTCTACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCg < 6:1742279/150‑1 (MQ=21) gtgtGCGCGGATCTACCTGTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTTGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCg < 1:1970803/148‑1 (MQ=255) cgttGCGCGGATCAACCTGGTCTTCTGGTACCGCATTAGCCTGTTGCTGTGCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCg < 1:1305680/149‑1 (MQ=255) ttGCGCGGATCAACCTGTTCTTCTGGTACCGCATTAGCCTGTTGCTGGTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGt < 4:160142/150‑1 (MQ=255) gcgcGGATGAACCTGTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCGAGCTTGCGTGCTTGGGCGCGTGCAATAGCCGCTTCTACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGttt < 6:630748/150‑1 (MQ=255) gcgcGGATCAACCTGGTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGTTCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGttt < 7:333136/150‑1 (MQ=255) cgcgGATCAACCTGTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTgc < 7:1280170/151‑1 (MQ=255) cgGATCAACCTGTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCTCGTGAAATAGCAGCTTCGACGTCAGCTTTAAGCGGATCAACCTGTTGTTATGGCTCGGAATTAGCCGGTTGATGttaaagattgcgg > 8:700964/1‑140 (MQ=14) cgGATCAACCTGTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCGTTGGCGCGTGCAATAGCCGCTTCGACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTgcgc < 1:920997/151‑1 (MQ=255) cgGATCAACCTGTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGATTGCGTGCTTTGGCTCGTGCAATAGCCGCTTCGACGGCAGCTTTGAGCGGAACAACCTGGTCTTCTGAAACAGAATTATCCGCTTGCTGTTTCACTTTgctc > 8:1176953/1‑149 (MQ=17) ggATCAACCTGTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCCGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCGGCATTAGACTCTTGCTGTTCGAGGTTgcgtg > 3:624568/1‑149 (MQ=14) gATCAACCTGTTCTTCTGGTACCGCATTAGCCTGTTGCTGTAGCGGAATGCCACCGTTCTCCACTGCAATAGCCGCTAATACGGCAGGATTCCGCCGATCGACATCTTATTCAGGCTCCGCATTAGGCGGTTGCTggtgcgggtggggcgc > 1:569326/1‑136 (MQ=255) aTCAACCTGTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGAGGAGAAACCTGTTATTCTCACTCCGCAATATACTGTTCCTGTTCCGGATTgagctgt > 1:286343/1‑148 (MQ=17) aagagTTCTTCTGGTACCTCTATAGCCTGCTGCTGTTCCCGCTTGCGTGCTTTCGCGCGTGCAATAGCCGCTTCGACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTgg < 6:2022712/147‑1 (MQ=25) ggtcttctGGGACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCGTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTc < 3:898468/148‑1 (MQ=255) gTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGAGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCt < 3:435667/149‑1 (MQ=255) ttcttcTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTAGACCGCAGCATTGCGCGGATCCACGACTGCGTCTGGTGACGCTTTAGCCTGTGGGTGTTCCCGTTTGACAGCATTGGCGCgg > 7:847153/1‑151 (MQ=9) gtcttctGCGTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCGTTGGCGCGTGCAATAGCCGCTTCTACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCgg < 3:1508626/150‑1 (MQ=17) tctGGGTCCGCATGAGCCTGATGCTGTTCCAGCTTGCGTGCGTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCggg < 1:740039/148‑1 (MQ=255) tGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGAGCGTGCAATAGCCGCATCGACGGCAGCTTTGCGCGGATCCACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGAGCGCGGTTGCGCGGGGTGGCTCGGGAAAtt > 6:1134480/1‑150 (MQ=17) ggaccgctagaGCCTGGTGCTGGTCCAGCTTGCTGGCGTGCGCGCGGGCAATAGCCGCGGCGACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGc < 5:1503281/141‑1 (MQ=17) ggaCCGCATTAGCCTGGTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGc < 5:165972/149‑1 (MQ=255) gTACCGCATTAGCCTGATGCTGTTCCCGCTTGCGTGCGTTCGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGc < 5:1242291/151‑1 (MQ=255) tcggCATTAGCCTGTTGCTGTTCCTGGTTGCTTGCGTTGGCGCGTGCAATAGCCGCTTCTACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCg < 5:1013703/147‑1 (MQ=17) ccGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCTACCTGTTCTTCTGGTTCCGCATTAGCCGGTTGCTGTTCCCTGTTGCGCCCTTTGGCGCGGGGAATAGCGGc > 3:327440/1‑151 (MQ=14) caatAGCCTGGTGCTGGTCCGCCTTGCGTGCGTTCGCGCGTGCAATAGCCGCGTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTc < 1:1821897/148‑1 (MQ=21) cATTAGCCTGTTGCTGGTCCAGCTTGCGTGCGTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGAGCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTc < 1:443999/151‑1 (MQ=255) cgtacccTGTTGCTGTCCCATCTCGAGTGCTTTGCGTCGTGCAATAGCCGCGTCTACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCg < 4:1245620/146‑1 (MQ=21) aTTAGCCTGTTGCTGTGCGAGCTTGCGGGCGTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCg < 8:1285172/151‑1 (MQ=255) tAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGACCTATGATGTTCCGCTTTGAGCGCATTAGCTCCGGCAATAGAGTCTTAGAc > 8:886882/1‑151 (MQ=17) aGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAc < 5:428942/150‑1 (MQ=255) aGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAAAAGCCAATTCCAAGGAGGATTTGCACGGATAAAACTGATCTTCTGGCAACGCATTAGCCGGTTGCAGTTCAAAATTGCGCGCTTTGGCTCGGGCAGTGGCggaggggggg > 6:701788/1‑143 (MQ=9) gCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCGACCTGTTCTTCTAGATCCGAATAACCAGGTTGATGTTAAAGATTTCTAGCAATGGCTAGATCAATAGCGTCTTCGaatc > 2:1684559/1‑148 (MQ=9) gCCTGTTGCTGGTCCAGCTTGCGTGCGTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAcgg < 7:1556093/151‑1 (MQ=255) tGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTGTGCGCGGATCGACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCAGATTGCTAGCTTTGGCTCGGGCAATAGCGGCtagggcggagg > 6:1628820/1‑141 (MQ=14) gTTGCTGTTCCAGGTTGGGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACggcggc < 7:1051930/151‑1 (MQ=255) gTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGGAGCTTTGCGCGGATCTACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAcggcgg < 8:262841/150‑1 (MQ=255) gTTCCAGCTTGCGGGCGTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTgcg < 1:1701316/151‑1 (MQ=255) tCCAGGTTGCGTGCTTGCGCGCGTGCAATAGCCGCGGCTACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTgcgc < 4:73939/150‑1 (MQ=17) gcctgCTTGCGTGCGTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGcgcg < 7:985000/147‑1 (MQ=255) cccgcttgcttgcttTCGCGCTTGCAATAGCCGCTTCTACGGCATCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCgg < 6:348217/148‑1 (MQ=17) cAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCCGCTTTGCGCGGATCGAGCTGTTCTTGTGGCTCCGCATTAGCCTCTTGATGTTCGAGGTTGCGGGCTTTGGCTAGGGAAATAGCGGCTTCGACGGCGGCtgtggggggg > 3:1963035/1‑145 (MQ=11) aGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGAGCTTTGGCTCGGGCAATAGCGGCTTCGCCGGCGGCTTTGCGCgg > 7:1448666/1‑149 (MQ=255) ggttGCGGGCGTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCGGTTTGCGCGCGTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATc < 1:1456615/149‑1 (MQ=17) tgctggcgttGGCGCGGGCAATAGCCGCGTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGa < 6:443883/142‑1 (MQ=14) gCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCCACCTGTTCTTCTGGCTCAGCATTAGCCGGTTGCTGTTCCCGAGAGCGCGCTGTGGCTCGGGCCATAGCGGCGTCGACGGCGGCTTTGCGCGGATCGccc > 5:941450/1‑151 (MQ=17) cGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCt > 8:1482422/1‑151 (MQ=255) gTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCTATATCTCAAGAAATACCTGATTCGAAAGCGGCTTTTCGCCGATctagatg > 2:641262/1‑145 (MQ=14) tgcgtgtgcgcGTGCAATAGCCGCTGCGACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGGGCTTTTGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGAcc < 2:1073901/141‑1 (MQ=14) ggcgtgcgcgcGGGCAATAGCCGCGTCGACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCtgt < 1:1025833/144‑1 (MQ=14) gcctttgcgcGGGCAATAGCCGCTTCTACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCtgtt < 6:1317768/145‑1 (MQ=14) gCTTTGGCGCGGGCAATAGCCGCTTCCACTGCAGCGTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCtgtt < 3:1162327/151‑1 (MQ=255) cgttGGCGCGGGCAATAGCCGCTGCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCtgttg < 7:1889182/149‑1 (MQ=255) cTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCACCCTGTTGTTCTGGATCACCATTAGCCGGTTGCTGTTCCAGGTTGCTCGCTTTGGCTCGGGCAATAGCTGCTTCCACGGCAGATTTAAGAGGATcagcaggggg > 6:184910/1‑142 (MQ=255) cgcgcGGGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGAGCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCTTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCt < 7:1173633/150‑1 (MQ=255) gatctagaaaTAGCCTCTTCGTCTTGCGCTTTTCGAGGATCTTCCTTTTTTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTtcttct < 8:1979/142‑1 (MQ=1) cgcgTGCACGAGCCGCTTCGCCGCCCGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGGTTGCGCGCTTTGGCGCGTGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTgg < 8:582284/151‑1 (MQ=14) gcgGGCAATAGCCGCGTCTACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGTTCTTTGGCGCGGGCAATAGCGGCTTCGACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGc < 2:935453/151‑1 (MQ=14) cgTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGAGCAACCTGATCTTCTGGCTCCGCATTAGCCGGGTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCt < 5:135248/151‑1 (MQ=255) tGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCACCCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGGTTTGCGGGGATCGCCCTGGGGTGCTgggggg > 3:2020932/1‑147 (MQ=17) ggCAATAGCCGCTGCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCg < 7:1660798/150‑1 (MQ=255) ggattagcctcgtgaaCGGGAGCTTTGCGCTTAGCAACCTGGTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCCTTTGCTGGCGTTCGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCgg < 1:852147/136‑1 (MQ=14) gCCGCGTCGACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCGACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAg < 3:1896371/151‑1 (MQ=255) gccgcgccGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCAGCTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCt < 7:1772408/144‑1 (MQ=255) ggccaCGGCAGCTTTTCGCGGCTCAACCTGATCTTCTGGATCCTCATTAGCCTGTTGCTGGTCCCGCTTGCGCGCTTTGGCGCGTGCAATAGCCGCGGCGACGGCGGCTTTTCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGt < 2:477498/147‑1 (MQ=11) ccaCGGCCGCTTTGCGCGGAGCTACCTGTTCTGCTGGCTGCTCATTAGCCTGGTGCTGGGCCCGTTTTCTCGCGTTCGCGCGGGCAATAGCGGCGTCTACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTg < 5:286059/149‑1 (MQ=14) gtcatcTTTCCGCGGATCAAGCGGTTCGTCTGCCTCAGCCTTCTCCGGTTGCCCTACCCGTTGGCGGGCGTTCTCGCGGGCAATAGCCGCGTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGt < 7:1863710/146‑1 (MQ=9) gcgcGGATCACGCTGTGCTTCTGGCTCCGCATTAGCCTGGTGCTGTTCGCGTTTGCTCGCGTTGGCGCGGGCAATAGCGGCTTCGACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCtt < 7:494910/150‑1 (MQ=14) gcgGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCCTTTGCGCGCTTTCGCTCGGGCAATAGCGGCGTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCg < 5:536666/151‑1 (MQ=255) gcgGAGCAACCTCTTCTTCTGGCTCCTCTTTAGCCTGGTGCTGGTCCCGTTTGCGCGCGTGCGCTCGGGCAATAGCGGCGTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCg < 1:1577457/151‑1 (MQ=14) gggATCTAACTGATCTTCTGGCTCCGCATTAGCCGGGTGCTGTTCCCGTTTGCGGGCTTTGGCGCGGGCAATAGCGGCGTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGt < 7:940185/150‑1 (MQ=14) cAAGCTGCTCTTCGGGGACCGCATTAGCCTGGTGCTGCTCGCGTTTTCGGGCCTGGGCGCGGGCAATAGCGGCGTCTACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCtt < 5:79125/150‑1 (MQ=14) cgcTGGTCTTCTGGGCGCGCATGAGCCTGCTGCTGTTCCGCTTTGGGGGCGTTAGCGCGGGCAATAGCGGCGGCTACGGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTgg < 7:1006578/149‑1 (MQ=2) ccTGTTCTTCTGTTTGCGCATTATCCTGTTGCTGTTCCCGTTTGCTGGCTTTGGCGCGGGCAATAGCCGCTTCTACTGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGc < 4:964336/151‑1 (MQ=11) ccTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCGATAGCTGCTTCCACGGCTGGTTTACGAGGATCAGCATCGTTTGCTAGATCGGAATAAGGAGGTTGATGTTAAAGCTTGCGTGcggtggg > 8:1782748/1‑145 (MQ=255) gctcttcgGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTTCGCGCTTTCGCGCGGGCAATAGCCGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACg < 1:7657/149‑1 (MQ=14) tcttctGGCTCCGCAATATCCTTCTGCTGTTCGGGTTTTTTGGCTTGTGCGCGGGCAATAGCGGCGTCTACTGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACgg < 4:597822/150‑1 (MQ=11) gcttctGGCTCCGCTTTAGCCGGTTGCTGTTCCAGCTAGCGCGCGTTGGCTCGGGCAATAGCTGCGTCGACGGCTTCTTTGCTCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACggg < 7:701355/150‑1 (MQ=14) ccctctGGCCCCGCATTAGTTTGTTTTTTTTCCCTTTTGCTCGCTTTTGCTCTTGCAATTGGTTGTTCGTCTGCGGCTTTTCGCGGATCTTCCTATTTTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACgg < 2:1997696/147‑1 (MQ=2) ttctGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCTGCTTCGACGGCGGATATGATCGGATAGAGGTGTTGTTATGGATGCTCATTAGCCTGTTAATGTTCCAGATTGCGAGAtttttaaaagga > 8:424700/1‑141 (MQ=255) tctGGCCGCGCATTCTCCGGTTGCTGGTCCGGTTTTCGGGCGTGCGCGCGGGCAATAGCCGCTGCTACTGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGc < 5:174116/149‑1 (MQ=14) tcgggCTCCGCATTAGCCTGGTGCTGGGCCGGTTTGCGCGCGTTCGCGCGGGCAATAGCGGCGTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCa < 3:710372/147‑1 (MQ=14) tGGCTCCGCATTAGCCGGTTGCTGTTCCCGATTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCtgtt > 4:1910656/1‑92 (MQ=255) ggCTCCGCATGAGCCTGGTGCTGGTCGCGTTTGCTGGCGTTCGCGCGGGCAATAGCGGCTTCCACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAg < 3:1043826/151‑1 (MQ=14) gcaccGCATTAGCCTGATGCTGTACCCGGGTGCGGGCTTTCGCTCGGGCAACAGCCGCTCCGACGGCTGCTCTGCGCTGATCAACCTGTTGTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGc < 3:1406506/148‑1 (MQ=11) gaaccGCATTAGCCGGTAGCCGACGCCCTTCGCCTGCCTGCGCGCGGGCAATAGCCGCTTCTACTGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGc < 2:1491799/148‑1 (MQ=11) gCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGAGGCTTCGACTGGGGCTTTGCGAGCAGCGACCTGTTCTTCTGTGTCGGCATTAGCCTGATGATCTTCCAGCTTGCGGGCTTTGGCGCGGGctcgggcggggg > 3:542508/1‑140 (MQ=255) gCATGAGCCGGGTGCTGGGCCCGTTTGCGCGCTTTGGCGCGGGCAATAGCCGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCtt < 1:688455/151‑1 (MQ=17) tAGTCGGTGGCTGTTCGCGGTGTCGCGCGTTCGGTCGTGCAATAGGGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGa < 5:2068101/150‑1 (MQ=14) tAGCCTTTTGCTGTTCGCGTTTTTTGGCTTTCGCGCGGGCAATAGCCGCGTCTACGGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGTTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGa < 2:251136/150‑1 (MQ=11) tAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGCGCAATAGCGGCTTCGACGGCGGCTTAGATCGGATCGACCTCTTGTTCTGCATCAGAATTATCCACTTGCTCATACACCTTGCGAGCATTGGCAATACAAATAGCGGCTTCGAc > 4:2015515/1‑151 (MQ=9) ggTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGGACGAGCTCAGGTACTCGCTCCGCAGTAGCCTGTTGCTGTACAATCTTGAGTGCTTTGGCAAACGCAATAGCGGCTTCGAcggcgg > 5:246691/1‑151 (MQ=14) | CGGCAACTGCCGCTTTGCGCGGATCAACCTGTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGG > DH1/2169399‑2169698 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |