Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*DH12,169,5770TG30.0% 314.8 / 88.8 317R661R (CGA→CGC) rsxCelectron transporter RsxC
Reads supporting (aligned to +/- strand):  ref base T (60/152);  new base G (10/81);  total (79/238)
Fisher's exact test for biased strand distribution p-value = 9.66e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 321 total aligned reads displayed.

GTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTC  >  DH1/2169429‑2169723
                                                                                                                                                    |                                                                                                                                                  
gTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCGAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCg                                                                                                                                                  <  2:1628218/151‑1 (MQ=255)
  tcttctGGTACCTGTTTAGCCTGTTGCTGTTCCTGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCTACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCgg                                                                                                                                                 <  4:830978/150‑1 (MQ=25)
    ttctGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCTACCTGTTCTTCTAGATCGGAATAAGCCCCTTCAGGTTGCCCTTTGCGCCGTATGGCTCgggat                                                                                                                                              >  7:1980/1‑149 (MQ=17)
     tctGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGTTCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCa                                                                                                                                              <  3:332013/150‑1 (MQ=255)
     tctGGGTCCGCATGAGCCTGATGCTGTTCCAGCTTGCGTGCGTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCggg                                                                                                                                                <  1:740039/148‑1 (MQ=255)
       tGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGAGCGTGCAATAGCCGCATCGACGGCAGCTTTGCGCGGATCCACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGAGCGCGGTTGCGCGGGGTGGCTCGGGAAAtt                                                                                                                                           >  6:1134480/1‑150 (MQ=17)
        ggTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCGGCTTCGGCGGCGGCGTGGGGCGGAGGCCCCTGTGCTGGGGGTTGCGCATTAGCCGGTTTCTGTTGCAGATTGCGCGCTTTGGCGCGGGCactcg                                                                                                                                          >  3:520972/1‑147 (MQ=2)
        ggTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAACCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAg                                                                                                                                          <  1:1647393/151‑1 (MQ=255)
         ggaccgctagaGCCTGGTGCTGGTCCAGCTTGCTGGCGTGCGCGCGGGCAATAGCCGCGGCGACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGc                                                                                                                                         <  5:1503281/141‑1 (MQ=17)
         gTACCGCATTAGCCTGATGCTGTTCCCGCTTGCGTGCGTTCGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGc                                                                                                                                         <  5:1242291/151‑1 (MQ=255)
          tACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCGGCTTAGCGAGAGACTACATGTTGTTATGGCTCGGCTTTAGGCTGTTGCTGTTCCAGTTTGCGGGATGTGGATAGGGCAATAGCg                                                                                                                                        >  4:1320375/1‑151 (MQ=9)
           aCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCgg                                                                                                                                       <  1:369954/151‑1 (MQ=255)
           aCCGCATTAGCCTGGTGCTGTTCCAGCTTGCGTGCGTGCGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCg                                                                                                                                        <  1:959572/150‑1 (MQ=255)
               cATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTc                                                                                                                                   <  1:886695/151‑1 (MQ=255)
               cATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTc                                                                                                                                   <  8:1093139/151‑1 (MQ=255)
                aTTAGCCTGTTGCTGTTCCAGGTTGCGTGCTTTCGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCg                                                                                                                                  <  4:607073/151‑1 (MQ=255)
                   aGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAAAAGCCAATTCCAAGGAGGATTTGCACGGATAAAACTGATCTTCTGGCAACGCATTAGCCGGTTGCAGTTCAAAATTGCGCGCTTTGGCTCGGGCAGTGGCggaggggggg                                                                                                                               >  6:701788/1‑143 (MQ=9)
                    gCCTGTTGCTGGTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAcgg                                                                                                                              <  1:1931305/151‑1 (MQ=255)
                     ccTGGTGCTGTTCGCGCTTGCGTGCTTGGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAcggc                                                                                                                             <  8:1208847/151‑1 (MQ=255)
                     ccTGCTGCTGTTCCCGCTTGCGTGCTTGCGCGCGGGCAATAGCCGCTGCGACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAcggc                                                                                                                             <  8:1875459/151‑1 (MQ=17)
                       tGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTGTGCGCGGATCGACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCAGATTGCTAGCTTTGGCTCGGGCAATAGCGGCtagggcggagg                                                                                                                           >  6:1628820/1‑141 (MQ=14)
                        tctGCTGTTCCAGGTTTCTTGCTATTGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCGCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAcggcgg                                                                                                                           <  6:2025813/148‑1 (MQ=17)
                        gTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGAcggcg                                                                                                                            <  7:1154754/149‑1 (MQ=255)
                         gtgctggtggaGCTTTGGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATGAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGGTCGGGCTATAGCGGCTTCGACGGCGGCt                                                                                                                         <  1:515376/141‑1 (MQ=17)
                          tGCTGTTGCTGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCt                                                                                                                         <  5:528338/150‑1 (MQ=255)
                          tGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATATCCGCTTCGACTCCAGCTTTGCAAGGATCTAAATGATCTTCTTGATCCGCATTAGCCGCTTGATCTTAAAAATTGAGCGCTTTGGCTCGGGCAAGAGCggatgcgcgggggggtg                                                                                                                        >  6:494737/1‑136 (MQ=9)
                           gCTGGTCCAGCTTGCGTGCTTTGGCGCGGGCAATAGCCGCTTCGACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCttt                                                                                                                       <  8:87367/151‑1 (MQ=255)
                              gTTCCTGCTTGCTTGCTTTGGCGCGTGCAATAGCCGCTTCTACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTgc                                                                                                                     <  8:234993/150‑1 (MQ=255)
                              gTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTgc                                                                                                                     <  3:975522/150‑1 (MQ=255)
                                gccACCTTGCGGGCGTTGGCGCGGGCAATAGCCGCGTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCGTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGcgcg                                                                                                                  <  7:1205430/150‑1 (MQ=17)
                                    ggttGCGGGCGTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCGGTTTGCGCGCGTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATc                                                                                                              <  1:1456615/149‑1 (MQ=17)
                                     gtttattgagttGGCGCGTGCAATAGCCGCTTCTACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCAGTTTGCGAGCTTTGGCTCGTGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCg                                                                                                             <  1:849018/141‑1 (MQ=14)
                                       tgctggcgttGGCGCGGGCAATAGCCGCGTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGa                                                                                                            <  6:443883/142‑1 (MQ=14)
                                       tGCGGGCCTTCGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCGTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGa                                                                                                            <  7:1410804/150‑1 (MQ=255)
                                        gCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCCACCTGTTCTTCTGGCTCAGCATTAGCCGGTTGCTGTTCCCGAGAGCGCGCTGTGGCTCGGGCCATAGCGGCGTCGACGGCGGCTTTGCGCGGATCGccc                                                                                                          >  5:941450/1‑151 (MQ=17)
                                         cGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCt                                                                                                         >  8:1482422/1‑151 (MQ=255)
                                           ggcgtgcgcgcGGGCAATAGCCGCGTCGACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCtgt                                                                                                       <  1:1025833/144‑1 (MQ=14)
                                            gcctttgcgcGGGCAATAGCCGCTTCTACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCtgtt                                                                                                      <  6:1317768/145‑1 (MQ=14)
                                            gCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCACCCTGTTCTTCTGGGTCCGCATTAGCCGGTTGCTGTTCCCGGTTGCGCGCTTTGGCGCGGGCGATCGCGGCTTCGACGGCGGGTTTGCGGGGATCGGCCtgtt                                                                                                      >  7:1037867/1‑151 (MQ=18)
                                            gCTTTGGCGCGGGCAATAGCCGCTTCCACTGCAGCGTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCtgtt                                                                                                      <  3:1162327/151‑1 (MQ=255)
                                             cgttGGCGCGGGCAATAGCCGCTGCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCtgttg                                                                                                     <  7:1889182/149‑1 (MQ=255)
                                             cTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCACCCTGTTGTTCTGGATCACCATTAGCCGGTTGCTGTTCCAGGTTGCTCGCTTTGGCTCGGGCAATAGCTGCTTCCACGGCAGATTTAAGAGGATcagcaggggg                                                                                                     >  6:184910/1‑142 (MQ=255)
                                               gtcgcgcGGGCAATAGCCGCGTCTACTGGAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCtgttg                                                                                                     <  4:195609/146‑1 (MQ=14)
                                                tcgcgcGGGCAATCGCCTCGGCGACGCCAGCCTTGCGCGGATCAACCTGGGCTTCCGGCTCCGCAGTAGCCTGGTGCTGTTCGCGTTTTCTCGCGTTCGCGCGGGCAATAGCGGCGTCTACGGCGGCTTTGCGCGGATCGACCTgttgtt                                                                                                   <  3:1426042/148‑1 (MQ=9)
                                                gagcgcGGGCAATAGCCGCGGCAACTGCCGCTTTGCGCGGATCAACCTGTTCTTCTGGTTCCGGATGGGACGCTTGCTGTTCACGCGTGCGGGCTGTGGGCAGTGGATTAGAGGCGTCGAGGGCCGCGATGAGAGCATCGACCtggtgtgg                                                                                                  >  5:1647416/3‑149 (MQ=9)
                                                agcagcgTGCAATAGCCGCGTCGACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGATCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTgttgtta                                                                                                  <  1:1810923/147‑2 (MQ=14)
                                                 ggcccgtccacgacccGCTTCCTCGCCCGCTTTGCGCGGATCTACCTGTTTTTCTGGATCCGCATTAGCCTGTTTCTGTTCCAGGTTGCGTGCTTTGGCACGTGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTtcttct                                                                                                 <  8:615965/137‑1 (MQ=11)
                                                 ggCGCGTGCAATAGCCGCTTCTACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTc                                                                                                  <  3:556137/150‑1 (MQ=255)
                                                  gcgcGTGCAATAGCCGCTTCTACTTCAGCTTTGCGCGGATCAACCTGATCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGAGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTg                                                                                                <  3:1960761/151‑1 (MQ=17)
                                                     ggggCAATAGCCGCGGCTACTGCAGCTTTTCGCGGTTCTACGTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTTTGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCt                                                                                             <  4:1570618/148‑1 (MQ=14)
                                                     cgTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGAGCAACCTGATCTTCTGGCTCCGCATTAGCCGGGTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCt                                                                                             <  5:135248/151‑1 (MQ=255)
                                                        gCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACGTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCTCGCTTTGGCGCGGGCAATAGCGGCTGCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCg                                                                                           <  3:2005293/150‑1 (MQ=255)
                                                         cAATACCAGCTTCGACGTCATCTATGCTCTTAGCATCTTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCAGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGc                                                                                         <  2:994317/151‑1 (MQ=14)
                                                            aaGCCGCTTCTACGGGAGCGTGGCGCGCATGAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCAtt                                                                                      <  5:270307/150‑1 (MQ=17)
                                                                ggcttcttatgCAGCTTTGCGCGTATCAAACTGTTCTTCTGGCTCCCGATTAGGCGTTTTCTGATCCGGTTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGcc                                                                                  <  3:829535/141‑1 (MQ=14)
                                                                 gccgcgccGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCAGCTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCt                                                                                 <  7:1772408/144‑1 (MQ=255)
                                                                  cTTCGACGGCAGCTTTGCGCGGATCGACCTGTTGTTCTGGATCCACATAGGAAGAGAGGAGTTGACGGTTACGCTCTTTTCCGCGGTCTATATCTGCTTGGACGGCGGATGTGGGAGAATCGACCTGTTGTTCTGGGTCgggggggggggg                                                                                >  2:1734620/1‑141 (MQ=2)
                                                                    gcGACTGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTg                                                                                <  8:164042/148‑1 (MQ=255)
                                                                       actgCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGGTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCt                                                                           <  3:628970/148‑1 (MQ=255)
                                                                        cGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGATTGCGCGCTTTGGCTCGGGCAATAGCTGCTTCAACGGCAGGTTTACGAGGATCAACAACTGGTTCTGCGTCGGAAGTATCCTgaaactt                                                                          >  4:988639/1‑145 (MQ=14)
                                                                         ggCCGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTGCGCGCTTTGGCGCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGt                                                                         <  1:12973/151‑1 (MQ=255)
                                                                                  gcgcTGATGTACCTGTTCTTCTGGCTCGGGATTTGCCGTTGTCTGTTCCAGCTTGCGCGCTTTGGCTCGTGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCtt                                                                 <  1:63483/150‑1 (MQ=11)
                                                                                  gcgcGGATCATCGTGTTCTTCTGGCTCCGCATTAGCCTGTGGCGGTGCCGGTGTGCGGTGCTTCGCGCGGGCAATAGCGGCTTCTACGGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCtt                                                                 <  6:869106/150‑1 (MQ=14)
                                                                                    gcgGAGCAACCTCTTCTTCTGGCTCCTCTTTAGCCTGGTGCTGGTCCCGTTTGCGCGCGTGCGCTCGGGCAATAGCGGCGTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCg                                                              <  1:1577457/151‑1 (MQ=14)
                                                                                     gggATCTAACTGATCTTCTGGCTCCGCATTAGCCGGGTGCTGTTCCCGTTTGCGGGCTTTGGCGCGGGCAATAGCGGCGTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGt                                                             <  7:940185/150‑1 (MQ=14)
                                                                                     cgGATCAACCTGTTCTTCTGGCTCCGCATTAGCCTGGTGCTGTTCCCGTTTGCGCGCGTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGt                                                             <  7:1576755/151‑1 (MQ=255)
                                                                                          cccccTGCTCTTCCGCCGCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCTGCTTTGCGCGGATCGACCTGTTCTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGCGCttt                                                        <  7:86902/148‑1 (MQ=11)
                                                                                          cAAGCTGCTCTTCGGGGACCGCATTAGCCTGGTGCTGCTCGCGTTTTCGGGCCTGGGCGCGGGCAATAGCGGCGTCTACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCtt                                                         <  5:79125/150‑1 (MQ=14)
                                                                                          aaatatGTTCTTCAGGCTCCTCATTCGCATGTGGCTGTTCTAGTTTGCGTGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCTGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCttt                                                        <  4:534500/146‑1 (MQ=14)
                                                                                           acccTGTTCTTCTGGCTCCGCATTAGCCTGGTGCTGTGCGGGTTTGCGCGCGTGCGCTCGGGCAATAGCGGCTGCGACTGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTg                                                       <  3:312603/149‑1 (MQ=14)
                                                                                           aaacacttcttcttcCTCCGCATTAGCCTTGTGCTGTTCGCGTTTGCGCGCCTTCGCGCGGGCAATAGCGGCTTCTACTGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTg                                                       <  5:402566/145‑1 (MQ=14)
                                                                                              cTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGGTTGCGCGCTTTGGCACGGGCAATAGCgg                                                                                                                                       >  2:1244308/1‑68 (MQ=255)
                                                                                                gggcatctcGCTCCGCATTTGCTTTTTGCGCATCCCGCTTGCGAGCTGTGGCTCTGGCCATAGCGGAGTGGAGGGGTGGGTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACg                                                  <  5:242/146‑1 (MQ=9)
                                                                                                gctcttcgGGCTCCGCATTAGCCTGTTGCTGTTCCCGTTTTCGCGCTTTCGCGCGGGCAATAGCCGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACg                                                  <  1:7657/149‑1 (MQ=14)
                                                                                                  tcttctgggtggactttAGGCGGGAGCTGTTCGCTTGTGAGCTCGTTTGCGCGGGCAATAGCCGCTTCTACTGCGGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACgg                                                 <  5:324438/135‑1 (MQ=9)
                                                                                                  ccctctGGCCCCGCATTAGTTTGTTTTTTTTCCCTTTTGCTCGCTTTTGCTCTTGCAATTGGTTGTTCGTCTGCGGCTTTTCGCGGATCTTCCTATTTTTCTGGTTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACgg                                                 <  2:1997696/147‑1 (MQ=2)
                                                                                                    ttctGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCTGCTTCGACGGCGGATATGATCGGATAGAGGTGTTGTTATGGATGCTCATTAGCCTGTTAATGTTCCAGATTGCGAGAtttttaaaagga                                               >  8:424700/1‑141 (MQ=255)
                                                                                                     tctGGCTCCGCATTAGCCGGTTGCTGTTCCCGGTTGCGCGCTTTGGCTCGGGCGATAGAGGGGTCGACGGCGTCTTTGAGCGGATCGGGCTCTTGTGCTGGGTAGGGATTGGGGGGTTGCTGTTCCAGATTGAGAGCTTTGgggcgggcgg                                             >  2:714954/1‑149 (MQ=255)
                                                                                                     tctGGCCGCGCATTCTCCGGTTGCTGGTCCGGTTTTCGGGCGTGCGCGCGGGCAATAGCCGCTGCTACTGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGc                                               <  5:174116/149‑1 (MQ=14)
                                                                                                         gcaccGCATTAGCCTGATGCTGTACCCGGGTGCGGGCTTTCGCTCGGGCAACAGCCGCTCCGACGGCTGCTCTGCGCTGATCAACCTGTTGTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGc                                         <  3:1406506/148‑1 (MQ=11)
                                                                                                         gCTCCGCATTATCCTGTTGCTCTTCCAGTTTTCGCGTATTCGATGGTGATATTTTCTCGTCTACTGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGc                                         <  2:591812/151‑1 (MQ=9)
                                                                                                            cggctacaGCCTGGTGCTGGGCGCGTTTGCTGGCTTTAGCGCGGGCAATAGCGGCTGCCACTGCGGCTTTGCGCGGATCCACCTGTTCTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCg                                        <  4:1727109/142‑1 (MQ=11)
                                                                                                              gcttgaccctgctGCTGGTCCGCTTTGCGCGCGTGGGCGCGGGCAATAGCCGCTTCTACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCtt                                    <  7:1663669/139‑1 (MQ=14)
                                                                                                                  tAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCTATAGCTGCTTCGACGGCAGTTTTACGTGGa                                                                                                                >  7:1847263/1‑71 (MQ=255)
                                                                                                                   atccttctGCTGTTCGCCTTTTCTGGCTTGCGCTCGGGCAATAGCCGCGTCTACTGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAcg                               <  6:326826/144‑1 (MQ=11)
                                                                                                                   aGCCGGTTGCTGTTCCTTTTTTCTATCTTTGGCTCGGGAAATAGAGGTTTCGACGGGAGCTTTGTGTTGATCTACCTGTTGTTCTTGCTATGTATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAcg                               <  8:506847/151‑1 (MQ=14)
                                                                                                                    gCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGAAATAGCTGCTTCGACGGCTGCTTTGAGCGTATCGACCGCTTGTTATGGCTCGGAATTAGCCTGTTCATTTTAAAGATTGCGGGCTTTGGCGCGGGCGAtcgggggggcggcgg                              >  2:408774/1‑137 (MQ=255)
                                                                                                                      cccgcgCTGTTCCCGCGTGCGCGCTTTTGTTTTTTCTATAGCGGCTTCGACGGCGTCTTTGAGCGGATCTCCCTGTTGTTCTGTCTCGGCATTTGTCGGGTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGAcggcg                            <  6:1784324/146‑1 (MQ=9)
                                                                                                                              tctgctgtttgttggcTTTCGCGCGGGCAATAGCCGCGTCTACTGCCGCTTTGCGCGGATCTACCTGTTCTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCttt                       <  8:335541/134‑1 (MQ=11)
                                                                                                                              ggtcgcgctggcgcgcgcTCGCGCGGGCTATAGCCGCGGCCACTGCCGCTTTGCGCGGATCTACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTgcg                    <  7:488559/141‑1 (MQ=11)
                                                                                                                                 cccGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCTGCTTTGCGCGGATCGCCCTGTTGTTCTGGGTCGGGATTATACTTTTGCTGATCCCGCTTGAGAGCTGAGGCCCGGGCTATAGCTGCGTCAACGGCTGGTTTGCGTgg                 >  3:702601/1‑151 (MQ=2)
                                                                                                                                  cagctgggtgtcTTTCGCTGGGGAACTATCTGCTTCGATCGCCGATTTTCTCGGCTTGTCCTGTTGTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGa                <  4:722279/140‑1 (MQ=2)
                                                                                                                                      ttgatggcctgcgCTCGGGCAATAGCCGCTGCTACTGCCGCTTTGCGCGGATCCACCTGTTCTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCg             <  2:1448730/138‑1 (MQ=11)
                                                                                                                                       tgtgggcTTTTGCGCGGTCAATAGCCGCTTCTAGTGCCGCTTTGCGCGGATCTACCTGTTTTTCTGGCTCGGCTTTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTTGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGa            <  6:662396/145‑1 (MQ=11)
                                                                                                                                       tGCGCGCGTTGGCTCGGGCAATAGCGGCTTCGACGGCCGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGGGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGa            <  7:745359/150‑1 (MQ=255)
                                                                                                                                         cgcgcTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCCGCATTAGCCTGTTGCTGTTCCAGCTATCGGGCTTTGGCACGGGGAATATCCGCTTCGCCGGCGGCATTGCGGGGCTCGACCt         >  3:1671142/1‑151 (MQ=11)
                                                                                                                                            gcTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGGTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGtt      <  7:1483276/151‑1 (MQ=255)
                                                                                                                                              tttGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGCCCTGTTGTTCTGGATCGGCATTAGCCTGTTTCGGTTCCAGCTTGCGTGCTTTGGATCGGGCGATAGCGTCTTCAAAGGCTGCTTTGCGGGGATCGGccgggggg    >  7:550349/1‑145 (MQ=14)
                                                                                                                                               ttGGGTCGGGCAATAGGTTCTTCGACGGCGTCTTTGCGCTTATCGACCTGTTGTTCTTTCTGCTCTTTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGttct    <  8:74105/150‑1 (MQ=11)
                                                                                                                                               ttGGCTCGGGCAATAGCGGCTTCGACGGCGGGTTTGCGCGGATCGCCCTGTTGTTCTGGGTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCCCGGGGAATAGCTGCTTCTACGGCAGTTTTTCGAGGAtgatcctggggtt   >  3:1794756/1‑139 (MQ=11)
                                                                                                                                                    |                                                                                                                                                  
GTTCTTCTGGTACCGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCGCGTGCAATAGCCGCTTCGACGGCAGCTTTGCGCGGATCAACCTGTTCTTCTGGCTCCGCATTAGCCGGTTGCTGTTCCCGTTTGCGCGCTTTGGCTCGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTGTTCTGGCTCGGCATTAGCCTGTTGCTGTTCCAGCTTGCGTGCTTTGGCACGGGCAATAGCGGCTTCGACGGCGGCTTTGCGCGGATCGACCTGTTCTTC  >  DH1/2169429‑2169723

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑