| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | DH1 | 3,668,924 | (T)5→6 | pseudogene (353/455 nt) | lpxA ← | hydroxymyristoyl‑ACP dehydratase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | DH1 | 3,668,919 | 1 | . | T | 97.1% | 1730.9 / 32.7 | 482 | pseudogene (358/455 nt) | lpxA | hydroxymyristoyl‑ACP dehydratase |
| Reads supporting (aligned to +/- strand): ref base . (12/2); new base T (235/232); total (248/234) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.21e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 520 total aligned reads displayed.
CCCTCTTCCACAATGGCGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑G‑TT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGCCAGAATACCTGTTGCCTGT > DH1/3668769‑3669064 | cccTCTTCCACAATGGCGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGcgc‑g > 4:276982/1‑151 (MQ=255)cccTCTTCCACAATGGCGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGcgc‑g < 8:1738570/151‑1 (MQ=255) ccTCTTCCACAATGGCGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑G‑t > 1:1084297/1‑151 (MQ=255) ctctTCCACAATGGCGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑G‑tt > 1:1865491/1‑151 (MQ=255) tCCACAATGGCGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑G‑tt‑tttt > 7:835923/1‑150 (MQ=255) ccACAATGGCGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑G‑tt‑ttttc < 7:1703107/151‑3 (MQ=255) acaATGGCGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑G‑tt‑ttttcg > 5:1766471/1‑147 (MQ=255) aaTGGCGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGaaa < 4:1026438/151‑1 (MQ=255) aTGGCGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAg < 5:1536556/151‑1 (MQ=255) ggCGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTg > 2:401054/1‑151 (MQ=255) actaccaTGCACAAAGGCGGATTTATCAATCACCTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTACGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGCGTCAGCCCGCGGCGC‑G‑TTATTTAGAAAGTGACt > 2:308266/7‑151 (MQ=255) gATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCAt < 6:1161745/151‑1 (MQ=255) gCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGAt < 4:1647963/151‑1 (MQ=255) gCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGAt > 1:869623/1‑151 (MQ=255) cacaAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGAtn < 2:1528736/151‑2 (MQ=255) caAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCAt < 2:1739912/151‑1 (MQ=255) caAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCAt > 3:1602506/1‑151 (MQ=255) caAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCAt < 4:1364353/151‑1 (MQ=255) aaaGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCAtt < 6:1846541/151‑1 (MQ=255) aGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTg < 3:215495/151‑1 (MQ=255) cGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATc > 6:1621207/1‑151 (MQ=255) ttATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGcc > 1:599003/1‑149 (MQ=255) ttATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGcc > 2:783108/1‑149 (MQ=255) atcaatcaCGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGc < 5:1409796/151‑1 (MQ=255) tcaatcaCGAATCACGCCTCCCGGCTACGAGCACACATAATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGCGG‑TT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGcc > 2:924430/1‑150 (MQ=255) caatcaCGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCAc < 2:1424576/151‑1 (MQ=255) caatcaCGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGCCGC‑GTTT‑TTTCGAAAGTGAAATCCATGATCATTTGATCGCCACGCa > 2:1918919/1‑150 (MQ=255) atcaCGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACgc > 7:1379969/1‑150 (MQ=255) tcaCGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGAc > 4:383963/1‑151 (MQ=255) cAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAACCTACTTTACCATCGACCAGAGCAACCACTTTAAAACGGGTCAGGCAGCGGCGC‑GTTT‑TTTCGAAAGTGACGACCAAGATAATTTGATCGCCACGCACGACCggcccct > 5:1654910/1‑146 (MQ=255) aGGCCTCCCGGCTACGAGGACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCGCTTTAAACCGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCtt < 8:1560363/151‑1 (MQ=255) gCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGa < 7:1050284/151‑1 (MQ=255) ccTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGa > 1:1299019/1‑150 (MQ=255) cTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGa > 1:1752886/1‑149 (MQ=255) tCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAgc > 8:289513/1‑151 (MQ=255) tCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTT‑TTTAGAAAGTGACATCCATGATAATTTTATCGCCAGGCACGACAGGGCGCTTGAAgc > 8:59071/1‑151 (MQ=255) cccGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAgc < 1:326953/150‑1 (MQ=255) cccGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAg < 6:625971/149‑1 (MQ=255) cccGGCTACGAGCACACATCATCGGTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAg < 2:1627048/149‑1 (MQ=255) gCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCt < 8:1119665/151‑1 (MQ=255) cTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCtt > 1:101697/1‑151 (MQ=255) tACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCCCTTGAAGCGCGCTTc > 6:1255269/1‑151 (MQ=255) aCGAGCACACCTCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTc < 4:1239978/150‑1 (MQ=255) aCGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTc < 6:1498913/150‑1 (MQ=255) aCGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCg < 6:1769039/151‑1 (MQ=255) cGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGt > 8:1494097/1‑151 (MQ=255) cacacaTCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAAt > 5:521301/1‑151 (MQ=255) cacaTCATCGTTGCTTCGCAAACTACTTTTCCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATAc > 5:1143607/1‑151 (MQ=255) acaTCTTCGTTGCTTCGCATACTACTTTACGATCGACCAGAGCAAGCCCTTTAAAACGGGTCAGGCCGGGGCGC‑GTTT‑TTTCGAATGTGACTTGCATGATCATTTGATCGCCAGGCTCGACCGGGCGCTTGAAGCGCGCTTCGTCAATAcc < 4:984606/151‑1 (MQ=255) catcGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGc < 3:170159/150‑1 (MQ=255) catcGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGc < 3:1841042/150‑1 (MQ=255) atcGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCg > 7:336716/1‑150 (MQ=255) cGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCCTGATCATTTTATACCCAGGCCCGCCCGGGCGCTTGAACCCCGCGTCGTGAATACCAGCgc > 7:1885375/1‑148 (MQ=255) cGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGa > 1:788997/1‑149 (MQ=255) cGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAag < 6:768431/151‑1 (MQ=255) tGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAagt > 4:1170968/1‑149 (MQ=255) ttCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTAc > 7:5581/1‑151 (MQ=255) cGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACa < 1:1568767/150‑1 (MQ=255) cGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAg < 3:1074234/151‑1 (MQ=255) actactTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCAc < 4:885198/151‑1 (MQ=255) tactTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCAccc > 8:717202/1‑151 (MQ=255) tactTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCAccc > 4:507745/1‑151 (MQ=255) tactTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCAccc > 3:556885/1‑151 (MQ=255) ttACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGt < 2:868581/150‑1 (MQ=255) aCCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAACTAGTACAGCTCACCCGGTTcc > 7:711907/1‑151 (MQ=255) ccATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTCCAGCTCACCCGGTTcc > 5:361893/1‑150 (MQ=255) ccATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTcc > 3:1178167/1‑150 (MQ=255) ccATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCa < 6:294604/151‑1 (MQ=255) cATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAg < 3:1492715/151‑1 (MQ=255) aTCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGt < 4:790609/151‑1 (MQ=255) cGACCAGAGCAACCCCTTTAAAAGGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGttt < 2:672926/151‑1 (MQ=255) cGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGtt < 4:1497317/150‑1 (MQ=255) gACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGtttt > 4:1702674/1‑151 (MQ=255) gagCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTAc < 7:1562547/151‑1 (MQ=255) agCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACg < 1:1404842/151‑1 (MQ=255) agCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACg > 7:1212999/1‑151 (MQ=255) aaCCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCtt > 8:7408/1‑151 (MQ=255) aaCCCCTTTAAAACGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCtt < 6:520673/151‑1 (MQ=255) ccccTTTAAAACGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCtttt < 3:31170/151‑1 (MQ=255) cccTTTAAAACGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCtttt > 5:879042/1‑150 (MQ=255) tttAAAACGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCCCCCGGTTCCAGTTTTCCTACGCTTTTAAAc > 1:548176/1‑151 (MQ=255) tAAAACGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGc > 2:1015627/1‑151 (MQ=255) aaaaCGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGc < 2:598489/150‑1 (MQ=255) aaaaCGGGGCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGc < 6:922612/150‑1 (MQ=255) aaaCGGGTCAGGCCGCGGCGCGG‑TT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCCCCCGGTTGCAGTTTTCCTACGCTTTTAAACGcc > 7:424306/1‑150 (MQ=255) aaaCGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCgagcgccc > 3:770905/1‑90 (MQ=255) aaaCGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGCCa < 4:1848348/151‑1 (MQ=255) aCGGGTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGcc > 1:731239/1‑148 (MQ=255) ggTCAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGCCAGAATa < 8:1378588/151‑1 (MQ=255) gcAGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGCCAGAATAcc < 5:1954683/150‑1 (MQ=255) aGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGCCAGAATACCTg < 8:479003/151‑1 (MQ=255) aGGCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGCCAGAATACCTg > 1:432580/1‑151 (MQ=255) ggCCGCTGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGCCAGAATACCTGt < 8:1264508/151‑1 (MQ=255) gCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGCCAGAATACCTGtt < 6:210114/151‑1 (MQ=255) gCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGCCAGAATACCTGtt < 8:1835089/151‑1 (MQ=255) gCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGGTCCAGTTTTCCTACGCTTTTAAACGCCAGAATACCTGtt > 5:701528/1‑151 (MQ=255) gCCGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCGTCGTCAATACCAGCGAACTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCGTTTAAACGCCAGAATACCTGtt > 3:937354/1‑151 (MQ=255) ccGCGGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGCCAGAATACCTGTTg < 2:1297756/151‑1 (MQ=255) cgcgGCGC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCATCGTCAATACCAGCGAAGTAGTACAGCTCACCCCGTTCCAGTTTTCCTACGCTTTTAAACCCCAGAATACCTGTTGc > 7:1468282/1‑151 (MQ=255) gcggcgC‑GTTT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCGTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGCGAGAATACCTGTTGcc < 6:1386631/151‑1 (MQ=255) | CCCTCTTCCACAATGGCGGTTGGATGCACAAAGGCGGATTTATCAATCACGTATCAGGCCTCCCGGCTACGAGCACACATCATCGTTGCTTCGCAAACTACTTTACCATCGACCAGAGCAACCCCTTTAAAACGGGTCAGGCCGCGGCGC‑G‑TT‑TTTCGAAAGTGACTTCCATGATCATTTGATCGCCAGGCACGACCGGGCGCTTGAAGCGCGCTTCGTCAATACCAGCGAAGTAGTACAGCTCACCCGGTTCCAGTTTTCCTACGCTTTTAAACGCCAGAATACCTGTTGCCTGT > DH1/3668769‑3669064 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |